Wall clock time and date at job start Sat Apr 11 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50694 * 120.00153 * 2 1 4 4 H 1.09001 * 110.67480 * 357.03840 * 3 2 1 5 5 O 1.44427 * 110.65661 * 234.06861 * 3 2 1 6 6 C 1.43741 * 107.00374 * 201.48124 * 5 3 2 7 7 C 1.54099 * 107.29224 * 26.48840 * 6 5 3 8 8 C 1.54814 * 104.18955 * 357.97034 * 7 6 5 9 9 H 1.08993 * 110.90829 * 97.35460 * 8 7 6 10 10 C 1.50704 * 110.90490 * 220.92369 * 8 7 6 11 11 O 1.21284 * 119.99734 * 115.67330 * 10 8 7 12 12 N 1.34779 * 119.99991 * 295.66451 * 10 8 7 13 13 C 1.46491 * 119.99880 * 180.02562 * 12 10 8 14 14 C 1.53503 * 114.20774 * 205.00140 * 13 12 10 15 15 N 1.47066 * 87.98596 * 220.34520 * 14 13 12 16 16 C 1.34780 * 136.05524 * 207.08426 * 15 14 13 17 17 O 1.21278 * 119.99552 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99850 * 180.02562 * 16 15 14 19 19 S 1.80998 * 109.46884 * 180.02562 * 18 16 15 20 20 C 1.76202 * 100.00018 * 179.97438 * 19 18 16 21 21 H 1.07999 * 119.99470 * 359.97438 * 20 19 18 22 22 C 1.38792 * 120.00215 * 179.97438 * 20 19 18 23 23 N 1.31632 * 119.99998 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00224 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46885 * 60.00124 * 24 22 20 26 26 H 1.48501 * 109.47264 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47388 * 300.00565 * 24 22 20 28 28 C 1.47060 * 87.88579 * 27.11915 * 15 14 13 29 29 H 1.07996 * 120.00031 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99807 * 180.02562 * 1 2 3 31 31 H 1.08007 * 119.99745 * 180.02562 * 2 1 3 32 32 H 1.08994 * 109.87854 * 267.06653 * 6 5 3 33 33 H 1.08997 * 109.99990 * 145.98156 * 6 5 3 34 34 H 1.08998 * 110.48899 * 239.29486 * 7 6 5 35 35 H 1.08998 * 110.49028 * 116.64680 * 7 6 5 36 36 H 0.96999 * 119.99329 * 0.02562 * 12 10 8 37 37 H 1.08999 * 113.41382 * 338.20274 * 13 12 10 38 38 H 1.09000 * 113.46355 * 105.56471 * 14 13 12 39 39 H 1.09003 * 113.46309 * 335.12917 * 14 13 12 40 40 H 1.09009 * 109.46818 * 299.99524 * 18 16 15 41 41 H 1.08991 * 109.47413 * 59.99670 * 18 16 15 42 42 H 0.97000 * 120.00107 * 180.02562 * 23 22 20 43 43 H 1.09006 * 113.47077 * 87.66003 * 28 15 14 44 44 H 1.09003 * 113.47044 * 218.03568 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3739 2.1476 -0.0527 5 8 3.0050 1.3497 -1.0943 6 6 4.0012 2.3278 -0.7520 7 6 4.0588 2.4041 0.7860 8 6 2.9646 1.4150 1.2563 9 1 3.3978 0.4476 1.5101 10 6 2.1948 1.9794 2.4225 11 8 1.0133 2.2272 2.3062 12 7 2.8194 2.2086 3.5947 13 6 2.0710 2.7567 4.7284 14 6 2.9349 3.5159 5.7450 15 7 2.1358 2.8933 6.8111 16 6 1.7893 3.2095 8.0747 17 8 2.1761 4.2478 8.5677 18 6 0.9222 2.2722 8.8751 19 16 0.6347 2.9723 10.5193 20 6 -0.3761 1.7091 11.2173 21 1 -0.6299 0.8366 10.6336 22 6 -0.8460 1.8353 12.5171 23 7 -0.5370 2.8990 13.2283 24 14 -1.9182 0.4965 13.2569 25 1 -1.1703 -0.7864 13.2688 26 1 -2.2863 0.8684 14.6466 27 1 -3.1509 0.3432 12.4430 28 6 1.8818 1.7737 5.8921 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 3.7229 3.2990 -1.1610 33 1 4.9717 2.0247 -1.1447 34 1 3.8318 3.4142 1.1267 35 1 5.0380 2.0897 1.1472 36 1 3.7644 2.0106 3.6874 37 1 1.1619 3.2814 4.4344 38 1 2.8185 4.5983 5.6910 39 1 3.9792 3.2032 5.7463 40 1 -0.0324 2.1367 8.3664 41 1 1.4220 1.3086 8.9724 42 1 -0.8651 2.9871 14.1369 43 1 2.6455 0.9970 5.9326 44 1 0.8702 1.3740 5.9639 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001530654038.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:10 Heat of formation + Delta-G solvation = -78.932089 kcal Electronic energy + Delta-G solvation = -26185.845439 eV Core-core repulsion = 22230.547110 eV Total energy + Delta-G solvation = -3955.298329 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.92861 -41.12247 -39.64589 -38.75224 -35.16882 -34.74704 -34.60921 -33.25693 -31.77508 -29.63645 -28.88734 -27.67866 -27.00421 -25.03915 -23.32002 -22.65913 -21.46988 -21.00071 -20.45178 -19.55056 -18.54896 -18.15244 -17.84646 -17.23233 -16.94329 -16.87681 -16.82587 -16.48080 -15.97593 -15.86286 -15.51229 -14.92100 -14.76908 -14.58675 -14.50880 -14.26310 -14.12666 -13.83230 -13.69410 -13.46891 -13.20388 -13.19956 -12.88186 -12.84962 -12.64662 -12.39911 -12.24573 -12.00312 -11.83887 -11.78076 -11.18014 -11.15019 -10.92794 -10.70365 -10.36335 -10.33732 -10.19165 -9.87057 -8.71230 -8.36713 -6.16068 1.13432 1.22803 1.39206 1.42850 1.46449 1.49054 1.51835 1.76138 2.22109 2.25441 2.97274 3.00098 3.10924 3.26426 3.47523 3.53540 3.56812 3.75909 3.85061 4.00260 4.08077 4.12682 4.22293 4.26366 4.32180 4.38513 4.41599 4.44276 4.51338 4.57089 4.76312 4.78457 4.85089 4.87564 4.91842 5.02191 5.08946 5.37299 5.39118 5.63093 5.75875 5.92558 6.17302 6.41001 6.52573 7.01562 7.04152 7.16025 8.72296 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020646 B = 0.001891 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.887220 B =14801.426331 C =15895.928027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.166 4.166 3 C 0.121 3.879 4 H 0.064 0.936 5 O -0.389 6.389 6 C 0.038 3.962 7 C -0.139 4.139 8 C -0.130 4.130 9 H 0.139 0.861 10 C 0.530 3.470 11 O -0.569 6.569 12 N -0.695 5.695 13 C 0.127 3.873 14 C 0.099 3.901 15 N -0.650 5.650 16 C 0.566 3.434 17 O -0.563 6.563 18 C -0.120 4.120 19 S -0.148 6.148 20 C -0.548 4.548 21 H 0.082 0.918 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 1.000 3.000 25 H -0.261 1.261 26 H -0.278 1.278 27 H -0.263 1.263 28 C 0.085 3.915 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.129 0.871 32 H 0.060 0.940 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.424 0.576 37 H 0.114 0.886 38 H 0.078 0.922 39 H 0.120 0.880 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.272 0.728 43 H 0.119 0.881 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.156 -7.423 -30.757 33.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.184 4.184 3 C 0.063 3.937 4 H 0.082 0.918 5 O -0.309 6.309 6 C -0.039 4.039 7 C -0.177 4.177 8 C -0.152 4.152 9 H 0.157 0.843 10 C 0.318 3.682 11 O -0.447 6.447 12 N -0.348 5.348 13 C 0.020 3.980 14 C -0.024 4.024 15 N -0.387 5.387 16 C 0.355 3.645 17 O -0.441 6.441 18 C -0.271 4.271 19 S 0.079 5.921 20 C -0.696 4.696 21 H 0.100 0.900 22 C -0.191 4.191 23 N -0.546 5.546 24 Si 0.821 3.179 25 H -0.185 1.185 26 H -0.203 1.203 27 H -0.188 1.188 28 C -0.038 4.038 29 H 0.107 0.893 30 H 0.136 0.864 31 H 0.147 0.853 32 H 0.078 0.922 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.140 0.860 36 H 0.262 0.738 37 H 0.132 0.868 38 H 0.096 0.904 39 H 0.138 0.862 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.081 0.919 43 H 0.137 0.863 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.820 -5.671 -29.934 32.679 hybrid contribution -0.855 -1.384 0.525 1.709 sum 10.965 -7.056 -29.409 32.170 Atomic orbital electron populations 1.24044 0.96078 1.02589 0.97235 1.22750 0.95854 0.97350 1.02463 1.21954 0.90638 0.96564 0.84512 0.91799 1.88935 1.39099 1.61184 1.41637 1.23372 0.93095 0.92511 0.94898 1.23006 0.99759 0.99455 0.95468 1.22888 0.96818 1.02843 0.92621 0.84324 1.20592 0.87122 0.76641 0.83884 1.90751 1.17576 1.52618 1.83748 1.45549 1.14257 1.64949 1.10036 1.22415 0.96638 0.94906 0.84051 1.23503 0.97432 1.00073 0.81375 1.49178 1.52539 1.25908 1.11109 1.19524 0.79714 0.85811 0.79451 1.90701 1.56553 1.27418 1.69468 1.23267 1.02356 1.02037 0.99401 1.85558 1.66919 1.32048 1.07533 1.23147 1.36592 1.07541 1.02283 0.89969 1.26146 0.97557 0.99085 0.96348 1.70173 1.44567 1.29313 1.10587 0.84991 0.78181 0.77620 0.77126 1.18514 1.20277 1.18757 1.23801 1.04172 0.91524 0.84313 0.89290 0.86418 0.85344 0.92170 0.87414 0.89922 0.86012 0.73760 0.86777 0.90373 0.86204 0.87880 0.87403 0.91905 0.86339 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 14.33 67.78 0.97 -1.55 16 2 C -0.17 -2.46 9.24 25.65 0.24 -2.22 16 3 C 0.12 1.81 2.76 30.53 0.08 1.90 16 4 H 0.06 1.24 7.19 -2.39 -0.02 1.22 16 5 O -0.39 -6.02 11.21 -148.98 -1.67 -7.69 16 6 C 0.04 0.30 7.70 72.35 0.56 0.86 16 7 C -0.14 -0.61 6.58 31.58 0.21 -0.40 16 8 C -0.13 -1.14 2.94 -10.24 -0.03 -1.17 16 9 H 0.14 0.62 8.05 -2.39 -0.02 0.61 16 10 C 0.53 7.11 7.04 87.66 0.62 7.73 16 11 O -0.57 -13.05 15.36 -3.04 -0.05 -13.10 16 12 N -0.69 -5.79 5.37 -441.93 -2.37 -8.16 16 13 C 0.13 1.82 4.61 45.47 0.21 2.02 16 14 C 0.10 1.65 8.38 83.18 0.70 2.34 16 15 N -0.65 -16.71 3.69 -858.37 -3.17 -19.88 16 16 C 0.57 21.66 8.10 87.66 0.71 22.37 16 17 O -0.56 -26.84 16.64 -3.02 -0.05 -26.89 16 18 C -0.12 -4.90 5.98 71.24 0.43 -4.47 16 19 S -0.15 -8.31 20.57 -56.49 -1.16 -9.48 16 20 C -0.55 -31.52 9.50 67.95 0.65 -30.87 16 21 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 22 C 0.01 0.78 5.49 84.86 0.47 1.24 16 23 N -0.91 -56.06 13.22 21.65 0.29 -55.77 16 24 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 25 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 26 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 27 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 28 C 0.09 1.40 8.23 83.18 0.68 2.09 16 29 H 0.09 1.58 7.87 -2.91 -0.02 1.56 16 30 H 0.12 1.41 8.06 -2.91 -0.02 1.38 16 31 H 0.13 1.48 8.06 -2.91 -0.02 1.45 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.08 0.40 7.85 -2.39 -0.02 0.39 16 35 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 36 H 0.42 0.45 8.76 -92.71 -0.81 -0.36 16 37 H 0.11 2.21 7.45 -2.39 -0.02 2.19 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 39 H 0.12 1.22 8.13 -2.39 -0.02 1.20 16 40 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 41 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 42 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 43 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 44 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -85.77 390.48 0.52 -85.25 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.20 Total: 10.17 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 6.48 Total: -0.13 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -5.26 Total: -83.81 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -1.77 Total: -47.67 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.48 kcal Total: -85.77 0.52 -85.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530654038.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.314 kcal (2) G-P(sol) polarization free energy of solvation -85.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds