Wall clock time and date at job start Sat Apr 11 2020 05:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99769 * 3 2 1 6 6 N 1.46500 * 109.47226 * 184.99495 * 5 3 2 7 7 C 1.34776 * 119.99923 * 180.02562 * 6 5 3 8 8 O 1.21272 * 120.00513 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99846 * 180.02562 * 7 6 5 10 10 S 1.80997 * 109.47088 * 180.02562 * 9 7 6 11 11 C 1.76203 * 99.99721 * 180.02562 * 10 9 7 12 12 H 1.07993 * 120.00610 * 359.97438 * 11 10 9 13 13 C 1.38804 * 119.99651 * 180.02562 * 11 10 9 14 14 N 1.31631 * 120.00083 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00032 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47059 * 59.99247 * 15 13 11 17 17 H 1.48499 * 109.47347 * 179.97438 * 15 13 11 18 18 H 1.48509 * 109.46921 * 299.99860 * 15 13 11 19 19 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 20 20 C 1.34777 * 119.99828 * 274.72131 * 19 3 2 21 21 O 1.21613 * 119.99962 * 0.28066 * 20 19 3 22 22 C 1.47381 * 120.00222 * 180.27565 * 20 19 3 23 23 C 1.36419 * 127.19043 * 359.69036 * 22 20 19 24 24 O 1.33651 * 108.39648 * 179.83113 * 23 22 20 25 25 C 1.34218 * 110.90909 * 0.44965 * 24 23 22 26 26 C 1.50692 * 125.43661 * 179.72368 * 25 24 23 27 27 C 1.34181 * 109.12156 * 359.72596 * 25 24 23 28 28 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 30 30 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 31 31 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 32 32 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 33 33 H 1.08995 * 109.47415 * 304.99804 * 5 3 2 34 34 H 1.09008 * 109.47087 * 65.00143 * 5 3 2 35 35 H 0.96998 * 120.00120 * 0.02562 * 6 5 3 36 36 H 1.08997 * 109.47068 * 300.00700 * 9 7 6 37 37 H 1.09008 * 109.46877 * 60.00083 * 9 7 6 38 38 H 0.97001 * 119.99726 * 180.02562 * 14 13 11 39 39 H 0.97001 * 120.00384 * 95.00578 * 19 3 2 40 40 H 1.07997 * 125.79811 * 359.97438 * 23 22 20 41 41 H 1.09002 * 109.46994 * 269.99731 * 26 25 24 42 42 H 1.09001 * 109.47726 * 29.99953 * 26 25 24 43 43 H 1.09004 * 109.47330 * 150.00300 * 26 25 24 44 44 H 1.07998 * 127.01886 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0869 8 8 6.1634 2.1484 -0.2592 9 6 5.8984 4.4747 0.0368 10 16 7.7021 4.4769 -0.1135 11 6 8.0216 6.2007 0.0638 12 1 7.2031 6.8891 0.2132 13 6 9.3254 6.6738 0.0104 14 7 10.3231 5.8348 -0.1722 15 14 9.6644 8.5011 0.1991 16 1 9.1690 8.9625 1.5208 17 1 11.1261 8.7457 0.1059 18 1 8.9673 9.2477 -0.8789 19 7 1.6525 2.0974 1.2518 20 6 0.4374 2.6692 1.3650 21 8 -0.3393 2.6370 0.4297 22 6 0.0497 3.3335 2.6222 23 6 0.7970 3.4504 3.7575 24 8 0.0836 4.1248 4.6645 25 6 -1.1222 4.4551 4.1762 26 6 -2.1896 5.2128 4.9229 27 6 -1.2255 4.0030 2.9171 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.9955 0.8311 0.6660 34 1 3.8500 1.0376 -1.0960 35 1 3.4412 3.5482 0.1314 36 1 5.4674 5.0883 -0.7543 37 1 5.6137 4.8808 1.0075 38 1 11.2343 6.1655 -0.2091 39 1 2.2720 2.1232 1.9978 40 1 1.7962 3.0657 3.8985 41 1 -2.8314 4.5090 5.4528 42 1 -1.7220 5.8883 5.6393 43 1 -2.7875 5.7891 4.2169 44 1 -2.0724 4.1096 2.2554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001531084489.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:18 Heat of formation + Delta-G solvation = -70.523893 kcal Electronic energy + Delta-G solvation = -26374.256199 eV Core-core repulsion = 22419.322477 eV Total energy + Delta-G solvation = -3954.933722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.94257 -40.27660 -39.07318 -36.65149 -33.86265 -33.57770 -33.11240 -32.44805 -31.80196 -30.09560 -28.01626 -26.98454 -25.51017 -24.35229 -23.39193 -21.49055 -21.25893 -20.35205 -20.16190 -18.21453 -17.79864 -16.89428 -16.70411 -16.58696 -16.27453 -15.79332 -15.44617 -15.16125 -14.82488 -14.80502 -14.00033 -13.93101 -13.66988 -13.60872 -13.49978 -13.39916 -13.35487 -13.16845 -12.96260 -12.63678 -12.38758 -12.22714 -11.82739 -11.77074 -11.38887 -11.11158 -11.06641 -11.05284 -10.78508 -10.27000 -10.12437 -9.85141 -9.52309 -9.35547 -9.08852 -8.99355 -8.97196 -8.27318 -6.52793 -6.23601 -3.94560 0.97387 1.66505 2.42503 2.73305 2.97992 3.03507 3.07191 3.22227 3.26207 3.29431 3.65941 4.11254 4.18600 4.26709 4.35301 4.55928 4.71127 4.81411 4.87802 4.99681 5.05962 5.09393 5.11515 5.15012 5.20792 5.25746 5.37732 5.47550 5.51694 5.58312 5.61598 5.74947 5.75831 5.84672 5.86764 5.96274 6.10230 6.13474 6.21091 6.50007 6.61259 7.14759 7.57246 7.60904 7.91332 8.33053 8.53208 9.21690 10.83732 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010307 B = 0.002509 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.849771 B =11156.020136 C =13395.631156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.136 3.864 4 H 0.098 0.902 5 C 0.113 3.887 6 N -0.740 5.740 7 C 0.532 3.468 8 O -0.516 6.516 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 N -0.723 5.723 20 C 0.590 3.410 21 O -0.528 6.528 22 C -0.234 4.234 23 C 0.023 3.977 24 O -0.171 6.171 25 C -0.014 4.014 26 C -0.075 4.075 27 C -0.163 4.163 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.399 0.601 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.400 0.600 40 H 0.211 0.789 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.728 -6.923 8.660 28.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.031 3.969 4 H 0.116 0.884 5 C -0.012 4.012 6 N -0.396 5.396 7 C 0.318 3.682 8 O -0.390 6.390 9 C -0.305 4.305 10 S 0.168 5.832 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.376 5.376 20 C 0.377 3.623 21 O -0.405 6.405 22 C -0.238 4.238 23 C -0.048 4.048 24 O -0.067 6.067 25 C -0.063 4.063 26 C -0.131 4.131 27 C -0.183 4.183 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.233 0.767 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.235 0.765 40 H 0.228 0.772 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -24.697 -8.436 7.942 27.280 hybrid contribution -0.569 2.480 0.545 2.602 sum -25.266 -5.957 8.486 27.311 Atomic orbital electron populations 1.21790 0.94563 1.00707 1.03072 1.21892 0.97230 0.95001 1.02933 1.21363 0.93673 0.94407 0.87407 0.88380 1.21604 0.91334 0.84735 1.03522 1.46007 1.07865 1.08850 1.76830 1.20322 0.81322 0.91141 0.75369 1.90709 1.55429 1.46158 1.46659 1.23535 1.06890 0.95142 1.04889 1.85386 0.91907 1.10981 1.94963 1.22823 0.95439 0.92425 1.57791 0.90985 1.24992 0.95063 0.98966 0.94529 1.70006 0.99539 1.34655 1.46080 0.86225 0.77387 0.83044 0.78854 1.19936 1.20792 1.19922 1.45939 1.16584 1.58056 1.16994 1.17203 0.81423 0.77403 0.86222 1.90807 1.50979 1.59047 1.39633 1.21485 0.97261 1.09369 0.95717 1.24456 0.97325 0.95923 0.87059 1.83746 1.24558 1.57240 1.41145 1.22360 0.86006 1.03458 0.94474 1.20349 0.93517 0.98985 1.00271 1.22471 0.98093 1.01957 0.95751 0.93430 0.92555 0.92059 0.90468 0.91423 0.90868 0.89838 0.76700 0.89219 0.89274 0.92105 0.76545 0.77209 0.89906 0.90255 0.89087 0.82372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.52 37.16 0.32 -1.01 16 2 C -0.13 -1.03 5.61 -26.73 -0.15 -1.18 16 3 C 0.14 1.17 2.41 -67.93 -0.16 1.00 16 4 H 0.10 0.98 7.57 -51.93 -0.39 0.59 16 5 C 0.11 1.14 5.23 -4.04 -0.02 1.12 16 6 N -0.74 -9.08 5.39 -60.29 -0.32 -9.41 16 7 C 0.53 9.43 7.85 -10.98 -0.09 9.34 16 8 O -0.52 -11.20 15.86 5.56 0.09 -11.11 16 9 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 10 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 11 C -0.54 -15.15 9.50 30.94 0.29 -14.85 16 12 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 13 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -25.98 13.22 55.49 0.73 -25.25 16 15 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 N -0.72 -5.76 4.46 -54.90 -0.24 -6.01 16 20 C 0.59 6.05 6.39 -12.54 -0.08 5.97 16 21 O -0.53 -7.03 14.13 5.27 0.07 -6.95 16 22 C -0.23 -2.19 6.31 -103.28 -0.65 -2.84 16 23 C 0.02 0.17 11.61 30.08 0.35 0.52 16 24 O -0.17 -1.47 10.52 7.65 0.08 -1.39 16 25 C -0.01 -0.11 7.28 -35.74 -0.26 -0.37 16 26 C -0.07 -0.33 10.40 36.00 0.37 0.05 16 27 C -0.16 -1.49 10.90 -37.45 -0.41 -1.90 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.59 5.66 -51.93 -0.29 0.30 16 30 H 0.06 0.64 7.85 -51.93 -0.41 0.23 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.91 8.14 -51.92 -0.42 0.48 16 35 H 0.40 4.16 8.14 -40.82 -0.33 3.83 16 36 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 37 H 0.09 1.60 8.14 -51.91 -0.42 1.17 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.40 2.46 7.57 -40.82 -0.31 2.15 16 40 H 0.21 0.81 7.47 -52.49 -0.39 0.42 16 41 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 388.55 15.07 5.86 5.86 Total: -1.00 -36.64 388.55 -7.66 -44.30 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.32 Total: 2.45 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -0.36 Total: -4.95 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.16 Total: -40.66 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: 0.24 Total: -19.45 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.64 -7.66 -44.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531084489.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.226 kcal (2) G-P(sol) polarization free energy of solvation -36.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds