Wall clock time and date at job start Sat Apr 11 2020 05:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47006 * 2 1 4 4 H 1.08999 * 109.46866 * 54.99478 * 3 2 1 5 5 C 1.50699 * 109.47149 * 175.00305 * 3 2 1 6 6 H 1.08000 * 119.99997 * 119.99704 * 5 3 2 7 7 C 1.37878 * 119.99652 * 299.99648 * 5 3 2 8 8 N 1.31514 * 120.00249 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 119.99741 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47177 * 90.00315 * 9 7 5 11 11 H 1.48500 * 109.47328 * 210.00063 * 9 7 5 12 12 H 1.48497 * 109.47521 * 330.00370 * 9 7 5 13 13 N 1.46500 * 109.46897 * 295.00155 * 3 2 1 14 14 C 1.34780 * 120.00027 * 85.00222 * 13 3 2 15 15 O 1.21602 * 119.99839 * 359.97438 * 14 13 3 16 16 C 1.47431 * 119.99819 * 179.97438 * 14 13 3 17 17 C 1.39732 * 120.21141 * 5.95268 * 16 14 13 18 18 C 1.37750 * 119.92991 * 179.70102 * 17 16 14 19 19 C 1.38611 * 120.34983 * 0.25220 * 18 17 16 20 20 S 1.76196 * 119.78689 * 180.02562 * 19 18 17 21 21 O 1.42099 * 104.27959 * 206.07417 * 20 19 18 22 22 O 1.42101 * 104.27898 * 333.92784 * 20 19 18 23 23 C 1.81399 * 104.45161 * 90.00031 * 20 19 18 24 24 C 1.53001 * 109.47426 * 179.97438 * 23 20 19 25 25 C 1.37950 * 120.42378 * 0.02562 * 19 18 17 26 26 C 1.38952 * 120.06578 * 0.02562 * 25 19 18 27 27 N 1.38878 * 120.17789 * 180.02562 * 26 25 19 28 28 H 1.09008 * 109.46986 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47494 * 299.99814 * 1 2 3 30 30 H 1.08997 * 109.47451 * 60.00251 * 1 2 3 31 31 H 1.08999 * 109.46755 * 240.00105 * 2 1 3 32 32 H 1.08997 * 109.47205 * 120.00242 * 2 1 3 33 33 H 0.96998 * 120.00156 * 180.02562 * 8 7 5 34 34 H 0.96996 * 120.00090 * 264.99869 * 13 3 2 35 35 H 1.08001 * 120.03414 * 359.97002 * 17 16 14 36 36 H 1.08000 * 119.82507 * 180.27097 * 18 17 16 37 37 H 1.08998 * 109.47115 * 300.00177 * 23 20 19 38 38 H 1.09005 * 109.46930 * 59.99749 * 23 20 19 39 39 H 1.08998 * 109.46820 * 59.99932 * 24 23 20 40 40 H 1.08992 * 109.47086 * 180.02562 * 24 23 20 41 41 H 1.08998 * 109.47215 * 300.00235 * 24 23 20 42 42 H 1.08001 * 119.96830 * 179.97438 * 25 19 18 43 43 H 0.96998 * 119.99696 * 24.79377 * 27 26 25 44 44 H 0.96993 * 120.00094 * 204.79204 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1432 0.8785 1.2279 8 7 3.4062 0.3367 2.1728 9 14 6.0049 0.8801 1.3810 10 1 6.4428 2.1131 2.0835 11 1 6.4391 -0.3109 2.1544 12 1 6.6130 0.8396 0.0269 13 7 1.6524 2.0974 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3417 2.6318 -0.4319 16 6 0.0452 3.3239 -2.6265 17 6 0.8820 3.2571 -3.7435 18 6 0.5092 3.8702 -4.9193 19 6 -0.6910 4.5590 -5.0001 20 16 -1.1535 5.3373 -6.5117 21 8 -2.0143 6.3950 -6.1122 22 8 0.0820 5.6039 -7.1610 23 6 -2.0831 4.0648 -7.4101 24 6 -2.5456 4.6259 -8.7562 25 6 -1.5255 4.6391 -3.9046 26 6 -1.1662 4.0280 -2.7095 27 7 -2.0049 4.1066 -1.6054 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8293 -0.0611 2.9498 34 1 2.2718 2.1231 -1.9978 35 1 1.8182 2.7215 -3.6863 36 1 1.1553 3.8138 -5.7829 37 1 -1.4437 3.1981 -7.5776 38 1 -2.9520 3.7671 -6.8230 39 1 -1.6769 4.9238 -9.3434 40 1 -3.1045 3.8614 -9.2958 41 1 -3.1851 5.4924 -8.5883 42 1 -2.4588 5.1780 -3.9756 43 1 -2.9560 4.2518 -1.7282 44 1 -1.6395 4.0164 -0.7114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556106244.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:29 Heat of formation + Delta-G solvation = -82.566645 kcal Electronic energy + Delta-G solvation = -27517.626754 eV Core-core repulsion = 23562.170819 eV Total energy + Delta-G solvation = -3955.455935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.17250 -38.21118 -37.30225 -36.14756 -35.41251 -34.33696 -33.56475 -32.66117 -31.70249 -30.49091 -28.83329 -27.03842 -24.86122 -23.96364 -23.09220 -22.28382 -20.64480 -19.53087 -19.16000 -18.24451 -17.63826 -16.99908 -16.55905 -16.13395 -15.94482 -15.59252 -15.43476 -14.79541 -14.65264 -14.59066 -14.06417 -14.04810 -13.75755 -13.45252 -13.12916 -12.92008 -12.83519 -12.72023 -12.28051 -12.22144 -12.06264 -11.98297 -11.67806 -11.58137 -11.31826 -11.25178 -11.02141 -10.89870 -10.76106 -10.64471 -10.36976 -10.25705 -9.70650 -9.31895 -9.17806 -9.11424 -8.56560 -7.99290 -7.62786 -6.18568 -4.28304 -0.21929 0.51829 1.40403 2.62949 2.97814 3.21235 3.28361 3.29890 3.61649 3.80969 3.93308 3.98685 4.04077 4.21212 4.31907 4.41711 4.68557 4.76579 4.99474 5.12280 5.13059 5.19914 5.26748 5.30381 5.47628 5.48531 5.68097 5.87722 6.05975 6.16648 6.31735 6.38433 6.57200 6.61379 6.96706 7.10719 7.24352 7.31403 7.51546 7.57290 7.65190 7.81806 7.96608 8.11362 8.53382 8.68971 8.98131 9.39103 10.86728 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.002642 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.373521 B =10594.725898 C =11301.272156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.696 5.696 14 C 0.547 3.453 15 O -0.548 6.548 16 C -0.152 4.152 17 C -0.062 4.062 18 C -0.095 4.095 19 C -0.600 4.600 20 S 2.496 3.504 21 O -0.938 6.938 22 O -0.935 6.935 23 C -0.609 4.609 24 C -0.150 4.150 25 C -0.111 4.111 26 C 0.249 3.751 27 N -0.858 5.858 28 H 0.022 0.978 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.031 0.969 32 H 0.100 0.900 33 H 0.265 0.735 34 H 0.389 0.611 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.142 0.858 43 H 0.393 0.607 44 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.767 5.409 -18.288 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.343 5.343 14 C 0.333 3.667 15 O -0.429 6.429 16 C -0.161 4.161 17 C -0.083 4.083 18 C -0.116 4.116 19 C -0.689 4.689 20 S 2.676 3.324 21 O -0.935 6.935 22 O -0.932 6.932 23 C -0.739 4.739 24 C -0.208 4.208 25 C -0.134 4.134 26 C 0.138 3.862 27 N -0.403 5.403 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.223 0.777 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.159 0.841 43 H 0.221 0.779 44 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -12.029 6.073 -17.593 22.161 hybrid contribution 0.987 -0.958 0.506 1.466 sum -11.042 5.115 -17.087 20.977 Atomic orbital electron populations 1.21838 0.98330 0.98078 1.01178 1.21939 0.92616 0.99675 1.02401 1.18847 0.94382 0.89220 0.80671 0.93121 1.21214 0.90585 1.39229 1.06438 0.92029 1.24877 0.98703 0.94677 0.95339 1.69885 1.35218 1.37484 1.09317 0.86444 0.84706 0.77679 0.78263 1.20538 1.21049 1.19786 1.46471 1.14093 1.55045 1.18724 1.17947 0.83064 0.79204 0.86436 1.90546 1.51234 1.60826 1.40270 1.20279 0.97367 1.02280 0.96131 1.21309 0.98406 0.96837 0.91714 1.20549 0.94776 0.97232 0.99079 1.30286 1.04238 1.15307 1.19027 1.05467 0.75477 0.76441 0.74966 1.93569 1.68281 1.50127 1.81520 1.93577 1.41523 1.83108 1.74990 1.30202 1.15153 1.18311 1.10201 1.21561 1.02975 1.02547 0.93739 1.20438 1.00819 1.00120 0.92063 1.17690 0.89904 0.90392 0.88177 1.42875 1.08884 1.80746 1.07814 0.95862 0.93144 0.94296 0.94980 0.88172 0.92503 0.77723 0.84564 0.84117 0.84418 0.84589 0.90734 0.89767 0.90811 0.84055 0.77867 0.74307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.16 0.32 -2.62 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.53 2.24 -69.08 -0.15 6.37 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 5 C -0.54 -13.74 8.73 -34.44 -0.30 -14.04 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.09 11.29 55.43 0.63 -23.47 16 9 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 N -0.70 -13.85 4.97 -56.01 -0.28 -14.13 16 14 C 0.55 10.40 6.30 -12.52 -0.08 10.32 16 15 O -0.55 -11.49 10.96 5.28 0.06 -11.43 16 16 C -0.15 -2.38 5.89 -104.80 -0.62 -2.99 16 17 C -0.06 -0.82 9.52 -39.20 -0.37 -1.20 16 18 C -0.10 -1.10 9.44 -39.62 -0.37 -1.48 16 19 C -0.60 -6.74 5.66 -39.55 -0.22 -6.96 16 20 S 2.50 23.48 5.15 -107.50 -0.55 22.93 16 21 O -0.94 -11.39 17.10 -57.54 -0.98 -12.37 16 22 O -0.93 -11.38 17.10 -57.54 -0.98 -12.37 16 23 C -0.61 -3.29 6.70 37.16 0.25 -3.04 16 24 C -0.15 -0.74 9.92 37.16 0.37 -0.37 16 25 C -0.11 -1.32 9.34 -39.42 -0.37 -1.69 16 26 C 0.25 3.52 6.76 -83.61 -0.57 2.96 16 27 N -0.86 -11.22 8.46 32.55 0.28 -10.94 16 28 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.05 1.14 7.84 -51.93 -0.41 0.74 16 30 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.39 6.76 6.60 -40.82 -0.27 6.49 16 35 H 0.14 1.56 6.45 -52.49 -0.34 1.22 16 36 H 0.14 1.32 7.55 -52.49 -0.40 0.93 16 37 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.14 0.51 8.14 -51.92 -0.42 0.09 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.14 1.38 7.55 -52.49 -0.40 0.98 16 43 H 0.39 3.84 8.91 -40.82 -0.36 3.48 16 44 H 0.42 6.34 6.16 -40.82 -0.25 6.09 16 LS Contribution 368.92 15.07 5.56 5.56 Total: -1.00 -33.45 368.92 -9.58 -43.04 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -5.92 Total: 14.17 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -2.36 Total: -16.20 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.62 Total: -48.54 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -1.91 Total: -36.17 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 23.48 SS G_CDS: -0.55 Total: 22.93 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.45 -9.58 -43.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556106244.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.530 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds