Wall clock time and date at job start Sat Apr 11 2020 05:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47006 * 2 1 4 4 H 1.08999 * 109.46866 * 54.99478 * 3 2 1 5 5 C 1.50699 * 109.47149 * 175.00305 * 3 2 1 6 6 H 1.08000 * 119.99997 * 119.99704 * 5 3 2 7 7 C 1.37878 * 119.99652 * 299.99648 * 5 3 2 8 8 N 1.31514 * 120.00249 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 119.99741 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47177 * 90.00315 * 9 7 5 11 11 H 1.48500 * 109.47328 * 210.00063 * 9 7 5 12 12 H 1.48497 * 109.47521 * 330.00370 * 9 7 5 13 13 N 1.46500 * 109.46897 * 295.00155 * 3 2 1 14 14 C 1.34780 * 120.00027 * 85.00222 * 13 3 2 15 15 O 1.21602 * 119.99839 * 359.97438 * 14 13 3 16 16 C 1.47431 * 119.99819 * 179.97438 * 14 13 3 17 17 C 1.39732 * 120.21141 * 5.95268 * 16 14 13 18 18 C 1.37750 * 119.92991 * 179.70102 * 17 16 14 19 19 C 1.38611 * 120.34983 * 0.25220 * 18 17 16 20 20 S 1.76196 * 119.78689 * 180.02562 * 19 18 17 21 21 O 1.42099 * 104.27959 * 206.07417 * 20 19 18 22 22 O 1.42101 * 104.27898 * 333.92784 * 20 19 18 23 23 C 1.81399 * 104.45161 * 90.00031 * 20 19 18 24 24 C 1.53001 * 109.47426 * 179.97438 * 23 20 19 25 25 C 1.37950 * 120.42378 * 0.02562 * 19 18 17 26 26 C 1.38952 * 120.06578 * 0.02562 * 25 19 18 27 27 N 1.38878 * 120.17789 * 180.02562 * 26 25 19 28 28 H 1.09008 * 109.46986 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47494 * 299.99814 * 1 2 3 30 30 H 1.08997 * 109.47451 * 60.00251 * 1 2 3 31 31 H 1.08999 * 109.46755 * 240.00105 * 2 1 3 32 32 H 1.08997 * 109.47205 * 120.00242 * 2 1 3 33 33 H 0.96998 * 120.00156 * 180.02562 * 8 7 5 34 34 H 0.96996 * 120.00090 * 264.99869 * 13 3 2 35 35 H 1.08001 * 120.03414 * 359.97002 * 17 16 14 36 36 H 1.08000 * 119.82507 * 180.27097 * 18 17 16 37 37 H 1.08998 * 109.47115 * 300.00177 * 23 20 19 38 38 H 1.09005 * 109.46930 * 59.99749 * 23 20 19 39 39 H 1.08998 * 109.46820 * 59.99932 * 24 23 20 40 40 H 1.08992 * 109.47086 * 180.02562 * 24 23 20 41 41 H 1.08998 * 109.47215 * 300.00235 * 24 23 20 42 42 H 1.08001 * 119.96830 * 179.97438 * 25 19 18 43 43 H 0.96998 * 119.99696 * 24.79377 * 27 26 25 44 44 H 0.96993 * 120.00094 * 204.79204 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1432 0.8785 1.2279 8 7 3.4062 0.3367 2.1728 9 14 6.0049 0.8801 1.3810 10 1 6.4428 2.1131 2.0835 11 1 6.4391 -0.3109 2.1544 12 1 6.6130 0.8396 0.0269 13 7 1.6524 2.0974 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3417 2.6318 -0.4319 16 6 0.0452 3.3239 -2.6265 17 6 0.8820 3.2571 -3.7435 18 6 0.5092 3.8702 -4.9193 19 6 -0.6910 4.5590 -5.0001 20 16 -1.1535 5.3373 -6.5117 21 8 -2.0143 6.3950 -6.1122 22 8 0.0820 5.6039 -7.1610 23 6 -2.0831 4.0648 -7.4101 24 6 -2.5456 4.6259 -8.7562 25 6 -1.5255 4.6391 -3.9046 26 6 -1.1662 4.0280 -2.7095 27 7 -2.0049 4.1066 -1.6054 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8293 -0.0611 2.9498 34 1 2.2718 2.1231 -1.9978 35 1 1.8182 2.7215 -3.6863 36 1 1.1553 3.8138 -5.7829 37 1 -1.4437 3.1981 -7.5776 38 1 -2.9520 3.7671 -6.8230 39 1 -1.6769 4.9238 -9.3434 40 1 -3.1045 3.8614 -9.2958 41 1 -3.1851 5.4924 -8.5883 42 1 -2.4588 5.1780 -3.9756 43 1 -2.9560 4.2518 -1.7282 44 1 -1.6395 4.0164 -0.7114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556106244.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:29 Heat of formation + Delta-G solvation = -107.808964 kcal Electronic energy + Delta-G solvation = -27518.721343 eV Core-core repulsion = 23562.170819 eV Total energy + Delta-G solvation = -3956.550524 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.43765 -39.52606 -38.13113 -37.07026 -36.95076 -35.53873 -34.32798 -33.97009 -33.28765 -31.90625 -29.88328 -28.87251 -25.86732 -24.96473 -24.49848 -23.38462 -22.15262 -21.24429 -19.97526 -19.45883 -18.79107 -18.12972 -17.60965 -17.27976 -17.23338 -16.80678 -16.50854 -16.31646 -16.15671 -15.48385 -15.27143 -15.00273 -14.69833 -14.57622 -14.36432 -14.21312 -13.92458 -13.66395 -13.43766 -13.31731 -13.18319 -13.13384 -13.06360 -12.90996 -12.70867 -12.58756 -12.31563 -12.19562 -12.12112 -12.07328 -11.66207 -11.57933 -11.37803 -11.07218 -10.67795 -10.52266 -10.36126 -9.67614 -8.68024 -8.17816 -6.34746 -0.93188 -0.50508 0.42161 1.43893 1.44731 1.54805 1.73933 1.91494 2.33068 2.58029 2.67097 2.93035 3.01059 3.12198 3.25218 3.70813 3.78677 3.86375 3.98498 4.14000 4.32125 4.45368 4.47330 4.48672 4.56421 4.72247 4.74929 4.81145 4.88960 4.93231 5.04736 5.08433 5.16973 5.20577 5.26021 5.42283 5.52633 5.58466 5.65721 5.78038 5.89630 6.14959 6.50644 6.72236 6.88377 6.97389 7.31520 7.50633 8.87369 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.002642 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.373521 B =10594.725898 C =11301.272156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.280 3.720 4 H 0.002 0.998 5 C -0.549 4.549 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.967 3.033 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.261 1.261 13 N -0.698 5.698 14 C 0.545 3.455 15 O -0.575 6.575 16 C -0.183 4.183 17 C -0.062 4.062 18 C -0.098 4.098 19 C -0.594 4.594 20 S 2.500 3.500 21 O -0.970 6.970 22 O -0.966 6.966 23 C -0.581 4.581 24 C -0.164 4.164 25 C -0.110 4.110 26 C 0.239 3.761 27 N -0.857 5.857 28 H 0.043 0.957 29 H 0.028 0.972 30 H 0.043 0.957 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.265 0.735 34 H 0.401 0.599 35 H 0.149 0.851 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.163 0.837 43 H 0.407 0.593 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.137 5.212 -21.381 25.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.020 0.980 5 C -0.588 4.588 6 H 0.088 0.912 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.792 3.208 10 H -0.206 1.206 11 H -0.209 1.209 12 H -0.185 1.185 13 N -0.346 5.346 14 C 0.334 3.666 15 O -0.457 6.457 16 C -0.192 4.192 17 C -0.082 4.082 18 C -0.119 4.119 19 C -0.680 4.680 20 S 2.683 3.317 21 O -0.967 6.967 22 O -0.963 6.963 23 C -0.714 4.714 24 C -0.223 4.223 25 C -0.133 4.133 26 C 0.128 3.872 27 N -0.402 5.402 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.237 0.763 35 H 0.166 0.834 36 H 0.182 0.818 37 H 0.181 0.819 38 H 0.179 0.821 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.094 0.906 42 H 0.180 0.820 43 H 0.238 0.762 44 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -12.392 5.917 -20.690 24.832 hybrid contribution 0.974 -0.840 1.342 1.859 sum -11.418 5.077 -19.348 23.032 Atomic orbital electron populations 1.21661 0.96852 0.99083 1.00298 1.21781 0.93844 0.99011 1.01311 1.18399 0.93625 0.89227 0.81069 0.97964 1.21568 0.91474 1.38978 1.06736 0.91188 1.25718 1.03128 0.94349 0.95047 1.70032 1.36996 1.38284 1.09819 0.85416 0.79355 0.77380 0.78621 1.20605 1.20916 1.18462 1.46196 1.15070 1.55578 1.17756 1.18468 0.82194 0.78512 0.87447 1.90530 1.51858 1.61667 1.41673 1.20048 0.99258 1.04627 0.95229 1.21481 0.98477 0.96812 0.91461 1.20847 0.95200 0.96656 0.99184 1.30703 1.03746 1.13723 1.19865 1.05453 0.75004 0.77045 0.74218 1.93527 1.68453 1.52698 1.82028 1.93536 1.43659 1.84293 1.74859 1.30015 1.15380 1.16328 1.09699 1.21776 1.03545 1.03514 0.93453 1.20684 1.01770 0.99642 0.91234 1.17915 0.89679 0.90546 0.89060 1.42848 1.09734 1.80468 1.07154 0.93770 0.95269 0.93844 0.94141 0.90933 0.92580 0.76270 0.83375 0.81762 0.81918 0.82132 0.90547 0.87450 0.90629 0.81959 0.76186 0.75557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.51 71.98 0.61 -4.70 16 2 C -0.12 -5.79 5.45 30.59 0.17 -5.63 16 3 C 0.28 14.00 2.24 44.24 0.10 14.10 16 4 H 0.00 0.15 7.58 -2.39 -0.02 0.13 16 5 C -0.55 -28.58 8.73 25.60 0.22 -28.36 16 6 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 7 C 0.02 0.95 5.29 84.65 0.45 1.40 16 8 N -0.91 -51.37 11.29 21.45 0.24 -51.13 16 9 Si 0.97 41.65 29.54 68.60 2.03 43.67 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 12 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 13 N -0.70 -28.30 4.97 -449.37 -2.23 -30.54 16 14 C 0.54 21.21 6.30 86.66 0.55 21.76 16 15 O -0.57 -25.11 10.96 -4.04 -0.04 -25.16 16 16 C -0.18 -5.68 5.89 -19.98 -0.12 -5.80 16 17 C -0.06 -1.57 9.52 22.52 0.21 -1.35 16 18 C -0.10 -2.06 9.44 22.24 0.21 -1.85 16 19 C -0.59 -12.00 5.66 22.29 0.13 -11.88 16 20 S 2.50 40.97 5.15 -56.49 -0.29 40.68 16 21 O -0.97 -21.88 17.10 -127.65 -2.18 -24.07 16 22 O -0.97 -21.70 17.10 -127.65 -2.18 -23.88 16 23 C -0.58 -3.76 6.70 71.98 0.48 -3.27 16 24 C -0.16 -0.98 9.92 71.98 0.71 -0.27 16 25 C -0.11 -2.43 9.34 22.37 0.21 -2.23 16 26 C 0.24 6.61 6.76 38.71 0.26 6.87 16 27 N -0.86 -22.42 8.46 -50.94 -0.43 -22.85 16 28 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.03 1.36 7.84 -2.39 -0.02 1.34 16 30 H 0.04 1.83 5.64 -2.39 -0.01 1.82 16 31 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 3.92 5.95 -2.39 -0.01 3.90 16 33 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 34 H 0.40 13.96 6.60 -92.71 -0.61 13.34 16 35 H 0.15 3.21 6.45 -2.91 -0.02 3.19 16 36 H 0.16 2.62 7.55 -2.91 -0.02 2.60 16 37 H 0.16 0.38 8.14 -2.39 -0.02 0.37 16 38 H 0.16 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.11 0.24 8.14 -2.39 -0.02 0.23 16 41 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.16 2.81 7.55 -2.91 -0.02 2.79 16 43 H 0.41 7.75 8.91 -92.71 -0.83 6.92 16 44 H 0.41 12.80 6.16 -92.71 -0.57 12.23 16 Total: -1.00 -74.82 368.92 -1.85 -76.67 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: -0.94 Total: 37.79 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: 4.20 Total: -21.20 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -2.42 Total: -104.52 kcal Atomic # 8 Polarization: -68.70 SS G_CDS: -4.41 Total: -73.11 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: 40.97 SS G_CDS: -0.29 Total: 40.68 kcal Total: -74.82 -1.85 -76.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556106244.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.140 kcal (2) G-P(sol) polarization free energy of solvation -74.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds