Wall clock time and date at job start Sat Apr 11 2020 05:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50705 * 119.99983 * 2 1 4 4 N 1.46900 * 109.46917 * 124.16799 * 3 2 1 5 5 C 1.46899 * 110.99698 * 200.31589 * 4 3 2 6 6 C 1.50695 * 109.47066 * 66.04951 * 5 4 3 7 7 H 1.08006 * 120.00247 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00099 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00026 * 0.02562 * 8 6 5 10 10 Si 1.86809 * 119.99969 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47126 * 59.99933 * 10 8 6 12 12 H 1.48498 * 109.46760 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46779 * 299.99777 * 10 8 6 14 14 C 1.46906 * 110.99954 * 76.36925 * 4 3 2 15 15 C 1.52997 * 109.46865 * 200.72214 * 14 4 3 16 16 C 1.53001 * 109.47056 * 184.04894 * 15 14 4 17 17 N 1.46501 * 109.47324 * 173.66694 * 16 15 14 18 18 C 1.32223 * 119.80519 * 69.23987 * 17 16 15 19 19 O 1.21252 * 122.90010 * 359.97438 * 18 17 16 20 20 C 1.51121 * 114.19232 * 180.24601 * 18 17 16 21 21 S 1.82386 * 103.48629 * 359.62646 * 20 18 17 22 22 C 1.36688 * 119.81344 * 249.22228 * 17 16 15 23 23 C 1.36588 * 126.25926 * 359.97438 * 22 17 16 24 24 C 1.40115 * 120.00384 * 20.87380 * 23 22 17 25 25 O 1.21843 * 119.99629 * 36.10703 * 24 23 22 26 26 O 1.35089 * 120.00096 * 216.10594 * 24 23 22 27 27 H 1.08003 * 119.99754 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.99860 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00471 * 180.02562 * 2 1 3 30 30 H 1.08991 * 109.47178 * 4.16836 * 3 2 1 31 31 H 1.08998 * 109.47055 * 244.16912 * 3 2 1 32 32 H 1.09005 * 109.46720 * 186.04715 * 5 4 3 33 33 H 1.08997 * 109.47365 * 306.04674 * 5 4 3 34 34 H 0.96997 * 119.99735 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.47556 * 80.71637 * 14 4 3 36 36 H 1.09006 * 109.47032 * 320.71211 * 14 4 3 37 37 H 1.08996 * 109.47711 * 64.04466 * 15 14 4 38 38 H 1.09008 * 109.47083 * 304.04824 * 15 14 4 39 39 H 1.09000 * 109.47049 * 53.67548 * 16 15 14 40 40 H 1.08996 * 109.47263 * 293.66790 * 16 15 14 41 41 H 1.09002 * 110.61651 * 118.23545 * 20 18 17 42 42 H 1.08999 * 110.61933 * 241.23062 * 20 18 17 43 43 H 1.08000 * 119.99473 * 200.87662 * 23 22 17 44 44 H 0.96702 * 113.99599 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9819 1.3402 1.1459 5 6 3.3676 2.7203 1.4693 6 6 2.1594 3.4789 1.9549 7 1 1.2007 2.9853 2.0167 8 6 2.2778 4.8031 2.3203 9 7 3.4450 5.4043 2.2446 10 14 0.7802 5.7432 2.9229 11 1 0.2370 5.0832 4.1371 12 1 1.1701 7.1383 3.2496 13 1 -0.2570 5.7556 1.8601 14 6 4.1662 0.5073 0.8972 15 6 4.8237 0.1446 2.2302 16 6 6.1122 -0.6373 1.9673 17 7 6.8191 -0.8534 3.2321 18 6 6.3113 -1.6730 4.1371 19 8 5.2681 -2.2692 3.9741 20 6 7.1402 -1.7973 5.3945 21 16 8.5631 -0.7015 5.0761 22 6 7.9998 -0.2071 3.4699 23 6 8.6305 0.6602 2.6240 24 6 7.9073 1.2982 1.6076 25 8 6.7559 1.6447 1.8045 26 8 8.4866 1.5292 0.4092 27 1 -0.5400 0.9354 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3576 2.1322 0.0747 31 1 2.6329 1.3959 -0.9250 32 1 4.1288 2.7115 2.2495 33 1 3.7666 3.2045 0.5779 34 1 3.5281 6.3360 2.5013 35 1 4.8755 1.0590 0.2803 36 1 3.8670 -0.4044 0.3799 37 1 4.1402 -0.4683 2.8177 38 1 5.0577 1.0565 2.7799 39 1 6.7488 -0.0707 1.2877 40 1 5.8678 -1.6001 1.5185 41 1 6.5759 -1.4542 6.2617 42 1 7.4735 -2.8256 5.5345 43 1 9.6868 0.8542 2.7387 44 1 7.9102 1.9741 -0.2270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588826698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:42 Heat of formation + Delta-G solvation = -35.892927 kcal Electronic energy + Delta-G solvation = -28350.419018 eV Core-core repulsion = 24396.987007 eV Total energy + Delta-G solvation = -3953.432011 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.79598 -40.10399 -37.40029 -37.04702 -35.77937 -33.63418 -32.90655 -32.16293 -31.74920 -29.62179 -27.16150 -26.24428 -24.90361 -23.78601 -22.34644 -21.40485 -20.11627 -19.84551 -18.99834 -18.62969 -17.93961 -17.18252 -16.75973 -16.39283 -16.11314 -16.02136 -15.18699 -14.97786 -14.72774 -14.48272 -14.17908 -13.90604 -13.70121 -13.58614 -13.32472 -12.90331 -12.72524 -12.57286 -12.22747 -11.87299 -11.77311 -11.70417 -11.38388 -11.14760 -10.93721 -10.77913 -10.71261 -10.63870 -10.51721 -10.28440 -10.19467 -9.96155 -9.61428 -9.17225 -9.08872 -8.81590 -8.34197 -8.11567 -7.11832 -5.93683 -3.94513 0.33580 0.67439 1.12973 2.06086 2.30483 2.74409 2.81712 3.37630 3.41266 3.44931 3.49970 3.60737 4.44690 4.49033 4.69051 4.77977 4.97649 5.06225 5.32571 5.38390 5.40814 5.49151 5.65140 5.70256 5.72575 5.77906 5.88374 6.01101 6.21749 6.24393 6.35035 6.45329 6.52024 6.64332 6.76721 6.99432 7.11821 7.25674 7.35310 7.45982 7.49389 7.90053 7.99837 8.24287 8.33686 8.66800 9.13536 9.68697 11.16631 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010199 B = 0.003730 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.603924 B = 7503.929454 C = 8216.032981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C 0.083 3.917 4 N -0.532 5.532 5 C 0.198 3.802 6 C -0.508 4.508 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.278 1.278 14 C 0.072 3.928 15 C -0.115 4.115 16 C 0.091 3.909 17 N -0.536 5.536 18 C 0.521 3.479 19 O -0.468 6.468 20 C -0.147 4.147 21 S -0.049 6.049 22 C 0.208 3.792 23 C -0.248 4.248 24 C 0.508 3.492 25 O -0.479 6.479 26 O -0.515 6.515 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.026 0.974 32 H 0.039 0.961 33 H -0.013 1.013 34 H 0.260 0.740 35 H 0.028 0.972 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.152 0.848 42 H 0.147 0.853 43 H 0.168 0.832 44 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.314 -14.808 1.070 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.147 4.147 3 C -0.044 4.044 4 N -0.256 5.256 5 C 0.073 3.927 6 C -0.547 4.547 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.204 1.204 14 C -0.058 4.058 15 C -0.153 4.153 16 C -0.032 4.032 17 N -0.256 5.256 18 C 0.307 3.693 19 O -0.339 6.339 20 C -0.298 4.298 21 S 0.192 5.808 22 C -0.007 4.007 23 C -0.284 4.284 24 C 0.354 3.646 25 O -0.369 6.369 26 O -0.326 6.326 27 H 0.114 0.886 28 H 0.106 0.894 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.005 0.995 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.170 0.830 42 H 0.165 0.835 43 H 0.185 0.815 44 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 13.451 -15.122 2.610 20.407 hybrid contribution -1.533 0.962 -1.366 2.268 sum 11.918 -14.160 1.244 18.550 Atomic orbital electron populations 1.23678 0.95978 1.01105 1.03407 1.22999 0.95860 0.98507 0.97317 1.21172 0.96238 0.95392 0.91645 1.62041 1.13296 1.14526 1.35710 1.19719 0.96518 0.80983 0.95434 1.21182 0.95446 0.94970 1.43083 0.92094 1.24963 0.95862 0.97640 0.96009 1.69969 1.23118 1.11733 1.48746 0.86633 0.83105 0.78727 0.79359 1.20255 1.21420 1.20352 1.21783 0.92462 0.96489 0.95054 1.21752 0.92926 1.00898 0.99734 1.22664 0.96152 1.01567 0.82777 1.45128 1.21365 1.39123 1.20022 1.19734 0.86193 0.79442 0.83976 1.90859 1.20488 1.44761 1.77827 1.24541 0.97764 1.05828 1.01634 1.86899 1.29738 1.53980 1.10176 1.22201 0.85785 0.95179 0.97507 1.19845 1.01444 1.07375 0.99724 1.18792 0.85123 0.78575 0.82150 1.91333 1.16997 1.47546 1.81035 1.85100 1.48408 1.74562 1.24514 0.88638 0.89395 0.88568 0.89125 0.95599 0.94265 0.99503 0.93062 0.95338 0.93160 0.91397 0.88837 0.88043 0.90585 0.83027 0.83484 0.81452 0.73405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.29 14.32 29.02 0.42 -2.87 16 2 C -0.13 -2.25 9.33 -36.02 -0.34 -2.58 16 3 C 0.08 1.70 5.23 -4.97 -0.03 1.68 16 4 N -0.53 -12.01 4.33 -237.52 -1.03 -13.04 16 5 C 0.20 5.35 4.54 -4.98 -0.02 5.32 16 6 C -0.51 -14.72 8.23 -34.44 -0.28 -15.00 16 7 H 0.06 1.76 7.32 -52.48 -0.38 1.38 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 9 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 10 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.07 1.36 4.66 -3.82 -0.02 1.34 16 15 C -0.11 -2.11 4.37 -26.73 -0.12 -2.23 16 16 C 0.09 1.32 4.44 -4.04 -0.02 1.31 16 17 N -0.54 -7.00 2.66 -114.86 -0.31 -7.30 16 18 C 0.52 6.54 7.54 -11.90 -0.09 6.45 16 19 O -0.47 -7.37 16.21 5.58 0.09 -7.28 16 20 C -0.15 -1.14 7.36 36.21 0.27 -0.88 16 21 S -0.05 -0.42 23.35 -107.50 -2.51 -2.93 16 22 C 0.21 2.39 6.82 -15.98 -0.11 2.28 16 23 C -0.25 -2.81 9.83 -39.47 -0.39 -3.20 16 24 C 0.51 6.84 5.42 31.44 0.17 7.01 16 25 O -0.48 -8.38 11.09 -19.53 -0.22 -8.60 16 26 O -0.51 -5.70 13.54 -41.57 -0.56 -6.26 16 27 H 0.10 1.57 7.84 -52.48 -0.41 1.16 16 28 H 0.09 1.22 8.06 -52.49 -0.42 0.79 16 29 H 0.10 1.56 7.33 -52.49 -0.38 1.18 16 30 H 0.09 2.04 6.22 -51.93 -0.32 1.72 16 31 H 0.03 0.51 7.99 -51.93 -0.41 0.09 16 32 H 0.04 1.16 6.64 -51.93 -0.34 0.81 16 33 H -0.01 -0.37 8.12 -51.93 -0.42 -0.79 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.03 0.55 7.29 -51.93 -0.38 0.17 16 36 H 0.05 0.86 6.85 -51.93 -0.36 0.50 16 37 H 0.07 1.35 7.09 -51.93 -0.37 0.98 16 38 H 0.09 2.04 5.13 -51.92 -0.27 1.78 16 39 H 0.10 1.42 3.68 -52.02 -0.19 1.23 16 40 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 41 H 0.15 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.15 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 44 H 0.41 3.46 8.98 45.56 0.41 3.87 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -34.99 372.16 -8.94 -43.94 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.08 Total: 5.01 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -0.65 Total: 0.17 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.60 Total: -46.88 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.69 Total: -22.14 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: -0.42 SS G_CDS: -2.51 Total: -2.93 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.99 -8.94 -43.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.044 kcal (2) G-P(sol) polarization free energy of solvation -34.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds