Wall clock time and date at job start Sat Apr 11 2020 05:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50705 * 119.99983 * 2 1 4 4 N 1.46900 * 109.46917 * 124.16799 * 3 2 1 5 5 C 1.46899 * 110.99698 * 200.31589 * 4 3 2 6 6 C 1.50695 * 109.47066 * 66.04951 * 5 4 3 7 7 H 1.08006 * 120.00247 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00099 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00026 * 0.02562 * 8 6 5 10 10 Si 1.86809 * 119.99969 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47126 * 59.99933 * 10 8 6 12 12 H 1.48498 * 109.46760 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46779 * 299.99777 * 10 8 6 14 14 C 1.46906 * 110.99954 * 76.36925 * 4 3 2 15 15 C 1.52997 * 109.46865 * 200.72214 * 14 4 3 16 16 C 1.53001 * 109.47056 * 184.04894 * 15 14 4 17 17 N 1.46501 * 109.47324 * 173.66694 * 16 15 14 18 18 C 1.32223 * 119.80519 * 69.23987 * 17 16 15 19 19 O 1.21252 * 122.90010 * 359.97438 * 18 17 16 20 20 C 1.51121 * 114.19232 * 180.24601 * 18 17 16 21 21 S 1.82386 * 103.48629 * 359.62646 * 20 18 17 22 22 C 1.36688 * 119.81344 * 249.22228 * 17 16 15 23 23 C 1.36588 * 126.25926 * 359.97438 * 22 17 16 24 24 C 1.40115 * 120.00384 * 20.87380 * 23 22 17 25 25 O 1.21843 * 119.99629 * 36.10703 * 24 23 22 26 26 O 1.35089 * 120.00096 * 216.10594 * 24 23 22 27 27 H 1.08003 * 119.99754 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.99860 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00471 * 180.02562 * 2 1 3 30 30 H 1.08991 * 109.47178 * 4.16836 * 3 2 1 31 31 H 1.08998 * 109.47055 * 244.16912 * 3 2 1 32 32 H 1.09005 * 109.46720 * 186.04715 * 5 4 3 33 33 H 1.08997 * 109.47365 * 306.04674 * 5 4 3 34 34 H 0.96997 * 119.99735 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.47556 * 80.71637 * 14 4 3 36 36 H 1.09006 * 109.47032 * 320.71211 * 14 4 3 37 37 H 1.08996 * 109.47711 * 64.04466 * 15 14 4 38 38 H 1.09008 * 109.47083 * 304.04824 * 15 14 4 39 39 H 1.09000 * 109.47049 * 53.67548 * 16 15 14 40 40 H 1.08996 * 109.47263 * 293.66790 * 16 15 14 41 41 H 1.09002 * 110.61651 * 118.23545 * 20 18 17 42 42 H 1.08999 * 110.61933 * 241.23062 * 20 18 17 43 43 H 1.08000 * 119.99473 * 200.87662 * 23 22 17 44 44 H 0.96702 * 113.99599 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9819 1.3402 1.1459 5 6 3.3676 2.7203 1.4693 6 6 2.1594 3.4789 1.9549 7 1 1.2007 2.9853 2.0167 8 6 2.2778 4.8031 2.3203 9 7 3.4450 5.4043 2.2446 10 14 0.7802 5.7432 2.9229 11 1 0.2370 5.0832 4.1371 12 1 1.1701 7.1383 3.2496 13 1 -0.2570 5.7556 1.8601 14 6 4.1662 0.5073 0.8972 15 6 4.8237 0.1446 2.2302 16 6 6.1122 -0.6373 1.9673 17 7 6.8191 -0.8534 3.2321 18 6 6.3113 -1.6730 4.1371 19 8 5.2681 -2.2692 3.9741 20 6 7.1402 -1.7973 5.3945 21 16 8.5631 -0.7015 5.0761 22 6 7.9998 -0.2071 3.4699 23 6 8.6305 0.6602 2.6240 24 6 7.9073 1.2982 1.6076 25 8 6.7559 1.6447 1.8045 26 8 8.4866 1.5292 0.4092 27 1 -0.5400 0.9354 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3576 2.1322 0.0747 31 1 2.6329 1.3959 -0.9250 32 1 4.1288 2.7115 2.2495 33 1 3.7666 3.2045 0.5779 34 1 3.5281 6.3360 2.5013 35 1 4.8755 1.0590 0.2803 36 1 3.8670 -0.4044 0.3799 37 1 4.1402 -0.4683 2.8177 38 1 5.0577 1.0565 2.7799 39 1 6.7488 -0.0707 1.2877 40 1 5.8678 -1.6001 1.5185 41 1 6.5759 -1.4542 6.2617 42 1 7.4735 -2.8256 5.5345 43 1 9.6868 0.8542 2.7387 44 1 7.9102 1.9741 -0.2270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588826698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:41 Heat of formation + Delta-G solvation = -60.753949 kcal Electronic energy + Delta-G solvation = -28351.497073 eV Core-core repulsion = 24396.987007 eV Total energy + Delta-G solvation = -3954.510066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.81480 -41.14842 -38.97338 -38.23247 -36.84452 -34.99823 -34.95940 -33.33247 -33.04903 -30.75629 -29.11746 -27.53490 -26.12483 -25.45745 -23.84442 -22.60775 -21.80554 -20.86184 -20.42276 -19.58562 -18.99010 -18.53758 -18.21491 -17.70488 -17.29034 -16.99175 -16.80385 -16.40244 -16.14093 -15.84130 -15.51530 -15.32101 -14.97183 -14.49932 -14.44056 -14.29616 -14.03321 -13.86709 -13.72821 -13.50338 -13.25403 -13.09655 -12.83093 -12.65711 -12.61831 -12.37913 -12.24892 -12.13855 -11.95967 -11.74722 -11.60629 -11.33502 -11.31884 -11.16187 -10.59555 -10.26368 -10.09882 -8.98065 -8.86970 -8.19125 -6.29524 -0.57382 -0.11470 0.39502 1.08430 1.36907 1.38162 1.40911 1.45413 1.48853 1.74629 2.38984 2.62461 2.74564 3.11999 3.34172 3.74281 3.82108 3.91737 3.97611 4.13369 4.23436 4.29798 4.33000 4.36257 4.44656 4.49355 4.63379 4.65591 4.82414 4.86026 4.91501 5.00361 5.12038 5.23922 5.28765 5.34654 5.64347 5.66774 5.70003 5.74191 5.98772 6.09340 6.28841 6.39254 6.66620 6.86778 6.99688 7.39339 8.91335 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010199 B = 0.003730 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.603924 B = 7503.929454 C = 8216.032981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.145 4.145 3 C 0.085 3.915 4 N -0.541 5.541 5 C 0.224 3.776 6 C -0.527 4.527 7 H 0.058 0.942 8 C 0.004 3.996 9 N -0.931 5.931 10 Si 0.966 3.034 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.266 1.266 14 C 0.075 3.925 15 C -0.096 4.096 16 C 0.100 3.900 17 N -0.544 5.544 18 C 0.512 3.488 19 O -0.508 6.508 20 C -0.140 4.140 21 S -0.003 6.003 22 C 0.192 3.808 23 C -0.257 4.257 24 C 0.510 3.490 25 O -0.530 6.530 26 O -0.507 6.507 27 H 0.088 0.912 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.064 0.936 31 H 0.031 0.969 32 H 0.005 0.995 33 H -0.045 1.045 34 H 0.263 0.737 35 H 0.024 0.976 36 H 0.076 0.924 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.171 0.829 42 H 0.185 0.815 43 H 0.197 0.803 44 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.452 -16.352 1.969 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.164 4.164 3 C -0.042 4.042 4 N -0.265 5.265 5 C 0.098 3.902 6 C -0.565 4.565 7 H 0.076 0.924 8 C -0.194 4.194 9 N -0.571 5.571 10 Si 0.790 3.210 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.191 1.191 14 C -0.054 4.054 15 C -0.134 4.134 16 C -0.024 4.024 17 N -0.264 5.264 18 C 0.300 3.700 19 O -0.383 6.383 20 C -0.290 4.290 21 S 0.239 5.761 22 C -0.021 4.021 23 C -0.293 4.293 24 C 0.358 3.642 25 O -0.424 6.424 26 O -0.318 6.318 27 H 0.107 0.893 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.023 0.977 33 H -0.027 1.027 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.124 0.876 40 H 0.105 0.895 41 H 0.188 0.812 42 H 0.202 0.798 43 H 0.214 0.786 44 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 13.631 -16.683 3.499 21.826 hybrid contribution -1.532 1.428 -1.663 2.674 sum 12.099 -15.255 1.837 19.556 Atomic orbital electron populations 1.23914 0.95491 1.02325 1.00581 1.22866 0.96339 0.97335 0.99825 1.21134 0.95560 0.96574 0.90979 1.62000 1.14974 1.12156 1.37389 1.19219 0.94928 0.83283 0.92813 1.21462 0.95769 0.95754 1.43521 0.92370 1.25889 0.99122 0.98577 0.95856 1.70112 1.25427 1.12162 1.49390 0.85498 0.79182 0.77270 0.79038 1.19625 1.20569 1.19060 1.21827 0.91186 0.96614 0.95737 1.21464 0.94440 0.99117 0.98426 1.22380 0.94609 1.01264 0.84115 1.45234 1.21876 1.39545 1.19773 1.20508 0.86049 0.78369 0.85024 1.90833 1.22315 1.46275 1.78836 1.24706 0.96929 1.08051 0.99355 1.86788 1.28946 1.53362 1.07002 1.22652 0.85222 0.95192 0.99076 1.20121 1.02601 1.07352 0.99180 1.19208 0.84520 0.77716 0.82800 1.91348 1.19183 1.49983 1.81871 1.85079 1.48330 1.74298 1.24132 0.89312 0.86194 0.86776 0.91783 0.95119 0.97664 1.02748 0.92813 0.95789 0.90556 0.93345 0.92732 0.87602 0.89549 0.81186 0.79801 0.78605 0.72268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.63 14.32 67.79 0.97 -4.66 16 2 C -0.15 -4.95 9.33 25.65 0.24 -4.71 16 3 C 0.09 3.57 5.23 85.56 0.45 4.02 16 4 N -0.54 -25.57 4.33 -905.37 -3.92 -29.50 16 5 C 0.22 12.83 4.54 85.56 0.39 13.22 16 6 C -0.53 -31.70 8.23 25.60 0.21 -31.49 16 7 H 0.06 3.46 7.32 -2.91 -0.02 3.43 16 8 C 0.00 0.22 5.46 84.65 0.46 0.68 16 9 N -0.93 -58.50 13.29 21.45 0.28 -58.21 16 10 Si 0.97 46.23 29.54 68.60 2.03 48.25 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 14 C 0.08 2.97 4.66 86.30 0.40 3.38 16 15 C -0.10 -3.72 4.37 30.59 0.13 -3.59 16 16 C 0.10 2.99 4.44 86.38 0.38 3.37 16 17 N -0.54 -14.16 2.66 -637.12 -1.69 -15.85 16 18 C 0.51 12.51 7.54 88.18 0.66 13.17 16 19 O -0.51 -16.05 16.21 -2.94 -0.05 -16.10 16 20 C -0.14 -1.82 7.36 71.37 0.53 -1.29 16 21 S 0.00 -0.05 23.35 -56.49 -1.32 -1.37 16 22 C 0.19 4.26 6.82 83.55 0.57 4.83 16 23 C -0.26 -5.67 9.83 22.34 0.22 -5.45 16 24 C 0.51 14.11 5.42 68.28 0.37 14.48 16 25 O -0.53 -19.81 11.09 18.71 0.21 -19.60 16 26 O -0.51 -11.33 13.54 -60.12 -0.81 -12.14 16 27 H 0.09 2.81 7.84 -2.91 -0.02 2.79 16 28 H 0.12 2.90 8.06 -2.91 -0.02 2.88 16 29 H 0.11 3.49 7.33 -2.91 -0.02 3.47 16 30 H 0.06 2.99 6.22 -2.39 -0.01 2.98 16 31 H 0.03 1.23 7.99 -2.39 -0.02 1.22 16 32 H 0.01 0.34 6.64 -2.38 -0.02 0.32 16 33 H -0.05 -2.81 8.12 -2.39 -0.02 -2.83 16 34 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 35 H 0.02 0.97 7.29 -2.39 -0.02 0.95 16 36 H 0.08 2.60 6.85 -2.38 -0.02 2.58 16 37 H 0.05 2.02 7.09 -2.39 -0.02 2.01 16 38 H 0.05 2.57 5.13 -2.38 -0.01 2.56 16 39 H 0.11 3.07 3.68 -3.83 -0.01 3.06 16 40 H 0.09 2.36 8.09 -2.39 -0.02 2.34 16 41 H 0.17 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.18 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.20 3.00 8.06 -2.91 -0.02 2.98 16 44 H 0.42 7.45 8.98 -74.06 -0.67 6.78 16 Total: -1.00 -80.26 372.16 1.08 -79.18 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.37 Total: 19.39 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 5.99 Total: 5.95 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -5.33 Total: -103.56 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -0.65 Total: -47.84 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -1.32 Total: -1.37 kcal Total: -80.26 1.08 -79.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.430 kcal (2) G-P(sol) polarization free energy of solvation -80.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds