Wall clock time and date at job start Sat Apr 11 2020 05:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 120.00153 * 2 1 4 4 N 1.46904 * 109.46990 * 125.11604 * 3 2 1 5 5 C 1.46901 * 110.99640 * 75.59177 * 4 3 2 6 6 C 1.50706 * 109.46889 * 199.63171 * 5 4 3 7 7 H 1.08002 * 119.99954 * 355.29442 * 6 5 4 8 8 C 1.37873 * 120.00083 * 175.02660 * 6 5 4 9 9 N 1.31517 * 120.00177 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00012 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47229 * 90.00238 * 10 8 6 12 12 H 1.48494 * 109.47484 * 210.00449 * 10 8 6 13 13 H 1.48510 * 109.47325 * 330.00518 * 10 8 6 14 14 C 1.46894 * 111.00014 * 199.54435 * 4 3 2 15 15 C 1.52998 * 109.47188 * 66.04442 * 14 4 3 16 16 C 1.53009 * 109.46941 * 180.02562 * 15 14 4 17 17 N 1.46499 * 109.46722 * 180.02562 * 16 15 14 18 18 C 1.32213 * 119.80742 * 269.72540 * 17 16 15 19 19 O 1.21249 * 122.90339 * 0.02562 * 18 17 16 20 20 C 1.51120 * 114.19560 * 179.80887 * 18 17 16 21 21 S 1.82380 * 103.48602 * 0.39698 * 20 18 17 22 22 C 1.36687 * 119.81134 * 90.00139 * 17 16 15 23 23 C 1.36586 * 126.26254 * 359.96063 * 22 17 16 24 24 C 1.40116 * 120.00155 * 179.97438 * 23 22 17 25 25 O 1.21840 * 119.99854 * 0.02562 * 24 23 22 26 26 O 1.35095 * 120.00346 * 179.97438 * 24 23 22 27 27 H 1.08004 * 119.99615 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00204 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.00035 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47381 * 5.11913 * 3 2 1 31 31 H 1.08998 * 109.47161 * 245.11865 * 3 2 1 32 32 H 1.08993 * 109.47405 * 79.62543 * 5 4 3 33 33 H 1.09005 * 109.47291 * 319.62532 * 5 4 3 34 34 H 0.96993 * 120.00154 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.47399 * 186.05017 * 14 4 3 36 36 H 1.09004 * 109.47098 * 306.04706 * 14 4 3 37 37 H 1.08999 * 109.47309 * 299.99819 * 15 14 4 38 38 H 1.08999 * 109.47083 * 60.00575 * 15 14 4 39 39 H 1.08999 * 109.46865 * 299.99960 * 16 15 14 40 40 H 1.08990 * 109.47101 * 60.00151 * 16 15 14 41 41 H 1.09000 * 110.80098 * 241.81409 * 20 18 17 42 42 H 1.09002 * 110.57537 * 118.87931 * 20 18 17 43 43 H 1.08007 * 120.00067 * 359.97438 * 23 22 17 44 44 H 0.96700 * 113.99987 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9983 1.3308 1.1329 5 6 4.1700 0.4853 0.8678 6 6 4.8478 0.1436 2.1698 7 1 4.4941 0.5782 3.0931 8 6 5.9160 -0.7281 2.1829 9 7 6.5078 -1.0259 3.3190 10 14 6.5226 -1.4861 0.5871 11 1 7.5629 -0.6119 -0.0121 12 1 7.1009 -2.8255 0.8636 13 1 5.3863 -1.6233 -0.3592 14 6 3.4030 2.7067 1.4505 15 6 2.1915 3.4898 1.9603 16 6 2.6130 4.9232 2.2905 17 7 1.4531 5.6728 2.7792 18 6 0.6899 6.3332 1.9251 19 8 0.9017 6.3529 0.7315 20 6 -0.4722 7.0573 2.5646 21 16 -0.2827 6.6817 4.3393 22 6 1.1694 5.6901 4.1162 23 6 1.8752 5.0582 5.1001 24 6 1.4652 5.1653 6.4356 25 8 0.4787 5.8218 6.7193 26 8 2.1630 4.5399 7.4088 27 1 -0.5400 0.9354 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3588 2.1316 0.0917 31 1 2.6196 1.4036 -0.9323 32 1 4.8675 1.0221 0.2250 33 1 3.8517 -0.4320 0.3723 34 1 7.2590 -1.6394 3.3283 35 1 4.1749 2.6901 2.2198 36 1 3.7944 3.1865 0.5534 37 1 1.4197 3.5065 1.1909 38 1 1.8001 3.0101 2.8574 39 1 3.3850 4.9068 3.0597 40 1 3.0041 5.4026 1.3932 41 1 -1.4210 6.6731 2.1902 42 1 -0.3980 8.1306 2.3893 43 1 2.7494 4.4759 4.8487 44 1 1.8039 4.6716 8.2969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588826699.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:44 Heat of formation + Delta-G solvation = -83.420282 kcal Electronic energy + Delta-G solvation = -27284.362508 eV Core-core repulsion = 23328.869557 eV Total energy + Delta-G solvation = -3955.492952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.43444 -41.12016 -39.17374 -38.33382 -36.95546 -34.97102 -34.89725 -33.44355 -33.04279 -31.00647 -29.56698 -27.44502 -26.19574 -25.46680 -23.36906 -22.36262 -21.93634 -20.81098 -20.46837 -19.50848 -19.01754 -18.92175 -17.87383 -17.65515 -17.37178 -16.72077 -16.59057 -16.48857 -16.26246 -16.04019 -15.72646 -15.41660 -15.26791 -14.71016 -14.53820 -14.37631 -14.11384 -13.82351 -13.70212 -13.49330 -13.29310 -13.03486 -12.90989 -12.70601 -12.63921 -12.45069 -12.37341 -12.08005 -11.90283 -11.86386 -11.77253 -11.45620 -11.33897 -11.05516 -10.76680 -10.31058 -10.12379 -9.02008 -8.98231 -8.25267 -6.27363 -0.60000 -0.08833 0.56330 1.07176 1.26279 1.34269 1.36359 1.42076 1.45992 1.99014 2.35261 2.49462 2.89928 3.06101 3.24183 3.72155 3.84471 3.96353 3.98203 4.05073 4.16053 4.23082 4.30902 4.32253 4.42405 4.49042 4.56085 4.62783 4.66554 4.75158 4.88587 4.91100 4.96631 5.07024 5.12565 5.21325 5.57906 5.59281 5.61805 5.76063 5.89218 6.00644 6.25785 6.39889 6.64039 6.78817 7.02627 7.35653 8.91169 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010830 B = 0.003228 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.838906 B = 8671.325901 C =10141.325846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.156 4.156 3 C 0.076 3.924 4 N -0.537 5.537 5 C 0.171 3.829 6 C -0.508 4.508 7 H 0.041 0.959 8 C 0.011 3.989 9 N -0.946 5.946 10 Si 0.939 3.061 11 H -0.268 1.268 12 H -0.283 1.283 13 H -0.252 1.252 14 C 0.069 3.931 15 C -0.114 4.114 16 C 0.098 3.902 17 N -0.539 5.539 18 C 0.522 3.478 19 O -0.507 6.507 20 C -0.174 4.174 21 S 0.025 5.975 22 C 0.209 3.791 23 C -0.267 4.267 24 C 0.526 3.474 25 O -0.545 6.545 26 O -0.505 6.505 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.035 0.965 32 H -0.013 1.013 33 H 0.029 0.971 34 H 0.266 0.734 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.173 0.827 42 H 0.176 0.824 43 H 0.160 0.840 44 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.986 17.353 -1.052 22.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.175 4.175 3 C -0.051 4.051 4 N -0.261 5.261 5 C 0.044 3.956 6 C -0.546 4.546 7 H 0.060 0.940 8 C -0.186 4.186 9 N -0.587 5.587 10 Si 0.763 3.237 11 H -0.193 1.193 12 H -0.209 1.209 13 H -0.175 1.175 14 C -0.060 4.060 15 C -0.152 4.152 16 C -0.026 4.026 17 N -0.260 5.260 18 C 0.311 3.689 19 O -0.382 6.382 20 C -0.324 4.324 21 S 0.268 5.732 22 C -0.007 4.007 23 C -0.303 4.303 24 C 0.376 3.624 25 O -0.441 6.441 26 O -0.316 6.316 27 H 0.124 0.876 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.053 0.947 32 H 0.005 0.995 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.190 0.810 42 H 0.193 0.807 43 H 0.177 0.823 44 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -15.857 17.641 -0.709 23.731 hybrid contribution 1.908 -0.943 -1.361 2.527 sum -13.948 16.698 -2.070 21.856 Atomic orbital electron populations 1.23871 0.94854 1.02657 1.00261 1.22867 0.96583 0.97873 1.00132 1.21342 0.95381 0.96500 0.91925 1.61867 1.16043 1.09859 1.38340 1.19991 0.87798 0.92775 0.95057 1.21232 1.13276 1.26251 0.93845 0.94031 1.25748 0.96598 0.96841 0.99414 1.70039 1.23928 1.36947 1.27816 0.85841 0.79345 0.78163 0.80356 1.19285 1.20893 1.17549 1.21847 0.96798 0.87668 0.99652 1.21754 0.98221 0.93306 1.01945 1.22015 0.86462 0.91507 1.02622 1.44966 1.29129 1.46768 1.05087 1.20335 0.83646 0.78400 0.86519 1.90835 1.72064 1.61204 1.14086 1.24921 1.01882 1.08646 0.96943 1.87948 1.25041 1.55449 1.04770 1.22554 0.97174 0.95809 0.85149 1.19753 1.07719 1.13455 0.89365 1.18536 0.80465 0.76321 0.87098 1.90895 1.27589 1.41527 1.84099 1.85106 1.55868 1.69111 1.21561 0.87580 0.87240 0.89082 0.89470 0.94660 0.99510 0.95306 0.92548 0.91415 0.94793 0.91537 0.91340 0.87222 0.87897 0.80991 0.80668 0.82281 0.71494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.58 14.32 67.78 0.97 -3.61 16 2 C -0.16 -4.96 9.33 25.65 0.24 -4.72 16 3 C 0.08 2.47 5.28 85.56 0.45 2.93 16 4 N -0.54 -21.27 4.35 -905.37 -3.93 -25.21 16 5 C 0.17 7.99 3.66 85.56 0.31 8.30 16 6 C -0.51 -28.67 9.16 25.60 0.23 -28.43 16 7 H 0.04 2.61 7.90 -2.91 -0.02 2.59 16 8 C 0.01 0.65 5.47 84.65 0.46 1.11 16 9 N -0.95 -58.43 13.96 21.45 0.30 -58.13 16 10 Si 0.94 43.55 27.57 68.60 1.89 45.45 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.25 -10.94 6.40 99.48 0.64 -10.30 16 14 C 0.07 2.34 4.78 86.30 0.41 2.75 16 15 C -0.11 -3.05 5.51 30.60 0.17 -2.88 16 16 C 0.10 2.14 5.04 86.38 0.44 2.57 16 17 N -0.54 -10.91 2.55 -637.14 -1.62 -12.53 16 18 C 0.52 10.00 7.79 88.18 0.69 10.69 16 19 O -0.51 -12.73 16.93 -2.93 -0.05 -12.78 16 20 C -0.17 -1.93 7.36 71.37 0.53 -1.41 16 21 S 0.02 0.42 20.64 -56.49 -1.17 -0.74 16 22 C 0.21 4.32 7.00 83.55 0.59 4.90 16 23 C -0.27 -6.03 9.28 22.34 0.21 -5.83 16 24 C 0.53 12.34 8.00 68.28 0.55 12.89 16 25 O -0.54 -14.17 14.84 18.72 0.28 -13.89 16 26 O -0.50 -10.28 13.54 -60.19 -0.82 -11.10 16 27 H 0.11 2.36 7.84 -2.91 -0.02 2.34 16 28 H 0.11 2.44 8.06 -2.91 -0.02 2.42 16 29 H 0.09 3.20 7.27 -2.91 -0.02 3.18 16 30 H 0.09 2.50 5.53 -2.39 -0.01 2.48 16 31 H 0.04 1.14 8.00 -2.39 -0.02 1.12 16 32 H -0.01 -0.59 7.68 -2.39 -0.02 -0.61 16 33 H 0.03 1.36 5.50 -2.38 -0.01 1.35 16 34 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 35 H 0.07 2.61 7.32 -2.39 -0.02 2.59 16 36 H 0.03 1.08 8.12 -2.39 -0.02 1.06 16 37 H 0.07 1.77 6.25 -2.39 -0.01 1.75 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.11 2.21 6.61 -2.39 -0.02 2.19 16 40 H 0.10 2.22 7.48 -2.39 -0.02 2.20 16 41 H 0.17 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.18 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.16 3.60 6.71 -2.91 -0.02 3.58 16 44 H 0.43 4.69 8.98 -74.06 -0.67 4.02 16 Total: -1.00 -73.87 378.96 1.42 -72.45 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.30 Total: 17.22 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 6.24 Total: -0.73 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -5.26 Total: -95.87 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -0.59 Total: -37.77 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.89 Total: 45.45 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -1.17 Total: -0.74 kcal Total: -73.87 1.42 -72.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826699.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.974 kcal (2) G-P(sol) polarization free energy of solvation -73.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds