Wall clock time and date at job start Sat Apr 11 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47291 * 2 1 4 4 C 1.52998 * 109.47314 * 120.00467 * 2 1 3 5 5 C 1.53008 * 109.47083 * 239.99977 * 2 1 3 6 6 C 1.50704 * 109.46475 * 60.00044 * 5 2 1 7 7 N 1.29373 * 124.70267 * 89.70601 * 6 5 2 8 8 C 1.30946 * 117.46850 * 179.75873 * 7 6 5 9 9 C 1.36776 * 113.91960 * 0.51595 * 8 7 6 10 10 C 1.46562 * 126.18147 * 179.75239 * 9 8 7 11 11 O 1.21722 * 119.99869 * 354.33399 * 10 9 8 12 12 N 1.34773 * 119.99929 * 174.33446 * 10 9 8 13 13 C 1.36897 * 120.00259 * 2.79966 * 12 10 9 14 14 H 1.07995 * 119.99629 * 310.12221 * 13 12 10 15 15 C 1.39010 * 119.99505 * 130.12019 * 13 12 10 16 16 N 1.31390 * 120.00285 * 350.46665 * 15 13 12 17 17 Si 1.86805 * 119.99444 * 170.47222 * 15 13 12 18 18 H 1.48490 * 109.47233 * 89.99928 * 17 15 13 19 19 H 1.48501 * 109.46751 * 210.00203 * 17 15 13 20 20 H 1.48503 * 109.47005 * 329.99506 * 17 15 13 21 21 C 1.46504 * 119.99698 * 182.79944 * 12 10 9 22 22 C 1.53007 * 109.47059 * 89.89183 * 21 12 10 23 23 C 1.50697 * 109.46894 * 179.97438 * 22 21 12 24 24 O 1.20819 * 120.00546 * 359.97438 * 23 22 21 25 25 O 1.34233 * 119.99450 * 180.02562 * 23 22 21 26 26 S 1.70922 * 124.70212 * 269.99329 * 6 5 2 27 27 H 1.09000 * 109.47407 * 59.99466 * 1 2 3 28 28 H 1.09001 * 109.47124 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46818 * 299.99651 * 1 2 3 30 30 H 1.08999 * 109.46905 * 60.00402 * 3 2 1 31 31 H 1.09000 * 109.47229 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46894 * 300.00286 * 3 2 1 33 33 H 1.08994 * 109.47580 * 59.99450 * 4 2 1 34 34 H 1.09000 * 109.47032 * 180.02562 * 4 2 1 35 35 H 1.09008 * 109.47018 * 299.99466 * 4 2 1 36 36 H 1.09000 * 109.47029 * 179.97438 * 5 2 1 37 37 H 1.08994 * 109.46798 * 300.00522 * 5 2 1 38 38 H 1.07995 * 123.04080 * 180.20440 * 8 7 6 39 39 H 0.97000 * 119.99618 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.46902 * 209.88614 * 21 12 10 41 41 H 1.08996 * 109.47461 * 329.88937 * 21 12 10 42 42 H 1.08999 * 109.46673 * 300.00268 * 22 21 12 43 43 H 1.09003 * 109.46827 * 59.99725 * 22 21 12 44 44 H 0.96702 * 116.99370 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 2.0400 -0.7213 -1.2493 6 6 1.5376 -0.0108 -2.4797 7 7 2.1579 0.9542 -3.0779 8 6 1.5929 1.4677 -4.1418 9 6 0.3922 0.8965 -4.4624 10 6 -0.4675 1.2651 -5.5907 11 8 -0.1827 2.2234 -6.2851 12 7 -1.5734 0.5431 -5.8593 13 6 -1.9250 -0.4993 -5.0445 14 1 -1.1933 -1.2482 -4.7798 15 6 -3.2237 -0.5937 -4.5581 16 7 -4.0608 0.4057 -4.7216 17 14 -3.7788 -2.1416 -3.6717 18 1 -3.5092 -2.0033 -2.2181 19 1 -5.2342 -2.3412 -3.8886 20 1 -3.0341 -3.3109 -4.2043 21 6 -2.3993 0.8739 -7.0232 22 6 -1.9012 0.0924 -8.2407 23 6 -2.7512 0.4322 -9.4378 24 8 -3.6621 1.2184 -9.3285 25 8 -2.4968 -0.1393 -10.6254 26 16 0.0659 -0.3633 -3.2742 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 -1.7489 1.2492 34 1 3.1300 -0.7209 1.2493 35 1 1.6767 -0.2075 2.1392 36 1 3.1300 -0.7209 -1.2495 37 1 1.6766 -1.7489 -1.2493 38 1 2.0326 2.2729 -4.7114 39 1 -4.9672 0.3396 -4.3824 40 1 -3.4366 0.6077 -6.8201 41 1 -2.3314 1.9429 -7.2250 42 1 -0.8639 0.3585 -8.4437 43 1 -1.9692 -0.9766 -8.0389 44 1 -3.0688 0.1102 -11.3641 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603339250.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:56 Heat of formation + Delta-G solvation = -104.051033 kcal Electronic energy + Delta-G solvation = -27905.874237 eV Core-core repulsion = 23949.486668 eV Total energy + Delta-G solvation = -3956.387568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.92421 -39.29536 -38.51877 -37.04421 -35.87516 -35.09612 -32.33156 -31.16141 -30.13316 -27.61655 -27.21852 -27.07515 -25.57943 -24.49072 -23.21365 -21.13158 -19.99658 -19.29991 -18.71500 -17.81919 -17.47162 -16.71817 -16.19041 -15.90811 -15.50273 -15.11916 -14.88501 -14.66723 -14.35614 -14.07340 -13.96857 -13.60976 -13.07494 -12.94121 -12.80264 -12.68970 -12.58008 -12.29440 -11.95862 -11.93101 -11.60182 -11.51819 -11.42181 -11.30211 -11.25707 -11.21982 -10.78379 -10.63871 -10.62510 -10.57225 -10.51601 -10.26469 -10.19932 -9.59874 -8.89538 -8.66921 -8.49493 -8.07628 -7.63449 -6.71465 -4.61080 1.11301 2.16589 2.58325 2.64679 2.94408 3.02011 3.04673 3.25224 3.37670 3.81414 4.20961 4.54291 4.66189 4.69739 4.87321 4.90245 5.12552 5.47996 5.52323 5.59410 5.64601 5.67450 5.75904 5.85985 5.89035 5.90794 5.95531 5.96487 6.04149 6.13539 6.19100 6.19412 6.23062 6.31170 6.48434 6.54377 6.70035 6.75558 6.89351 6.97854 7.15859 7.66182 7.94810 8.22253 8.43464 8.66864 9.12550 9.58018 10.27780 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014655 B = 0.003846 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.140929 B = 7278.765541 C = 8552.043788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.063 4.063 3 C -0.137 4.137 4 C -0.138 4.138 5 C -0.029 4.029 6 C -0.042 4.042 7 N -0.485 5.485 8 C 0.072 3.928 9 C -0.253 4.253 10 C 0.551 3.449 11 O -0.587 6.587 12 N -0.433 5.433 13 C -0.353 4.353 14 H 0.098 0.902 15 C 0.065 3.935 16 N -0.832 5.832 17 Si 0.904 3.096 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.259 1.259 21 C 0.135 3.865 22 C -0.127 4.127 23 C 0.484 3.516 24 O -0.514 6.514 25 O -0.524 6.524 26 S 0.262 5.738 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.171 0.829 39 H 0.280 0.720 40 H 0.107 0.893 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.138 -6.240 4.531 9.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.065 4.065 3 C -0.194 4.194 4 C -0.195 4.195 5 C -0.069 4.069 6 C -0.314 4.314 7 N -0.200 5.200 8 C -0.086 4.086 9 C -0.378 4.378 10 C 0.340 3.660 11 O -0.473 6.473 12 N -0.151 5.151 13 C -0.486 4.486 14 H 0.115 0.885 15 C -0.148 4.148 16 N -0.464 5.464 17 Si 0.727 3.273 18 H -0.189 1.189 19 H -0.200 1.200 20 H -0.183 1.183 21 C 0.011 3.989 22 C -0.165 4.165 23 C 0.326 3.674 24 O -0.402 6.402 25 O -0.335 6.335 26 S 0.526 5.474 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.188 0.812 39 H 0.090 0.910 40 H 0.125 0.875 41 H 0.090 0.910 42 H 0.117 0.883 43 H 0.125 0.875 44 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 4.791 -6.180 5.076 9.323 hybrid contribution -0.414 0.244 -0.650 0.809 sum 4.377 -5.936 4.426 8.601 Atomic orbital electron populations 1.22062 0.94315 1.02130 1.02501 1.20495 0.95983 0.96124 0.93862 1.21834 1.00823 0.95028 1.01724 1.21845 1.00839 1.00068 0.96775 1.20229 1.01164 0.97144 0.88352 1.28144 1.01360 0.99410 1.02507 1.66129 1.35034 1.10499 1.08360 1.22140 0.91865 1.00743 0.93892 1.25995 1.01775 1.05418 1.04629 1.17298 0.82923 0.82517 0.83309 1.90688 1.75167 1.29090 1.52392 1.43104 1.21702 1.27923 1.22374 1.19275 0.96792 1.04543 1.28002 0.88514 1.25639 0.96455 0.97608 0.95053 1.69840 1.06736 1.29516 1.40260 0.86255 0.78918 0.81592 0.80492 1.18900 1.19996 1.18313 1.21109 0.97411 0.98379 0.81961 1.21866 0.99617 1.04556 0.90509 1.23707 0.83004 0.76972 0.83712 1.90709 1.31007 1.33471 1.84970 1.84587 1.60619 1.67696 1.20647 1.85046 1.15160 1.30983 1.16252 0.91791 0.92440 0.92620 0.93372 0.92751 0.91893 0.92619 0.92667 0.92591 0.89998 0.90409 0.81181 0.90976 0.87460 0.91044 0.88333 0.87511 0.74011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.01 37.16 0.30 -1.71 16 2 C -0.06 -0.77 0.80 -154.51 -0.12 -0.89 16 3 C -0.14 -1.80 8.17 37.16 0.30 -1.50 16 4 C -0.14 -1.33 8.47 37.16 0.31 -1.02 16 5 C -0.03 -0.38 4.86 -27.88 -0.14 -0.51 16 6 C -0.04 -0.71 4.92 -13.31 -0.07 -0.78 16 7 N -0.49 -9.05 9.63 -11.25 -0.11 -9.16 16 8 C 0.07 1.45 11.17 -18.46 -0.21 1.25 16 9 C -0.25 -5.45 6.35 -36.76 -0.23 -5.68 16 10 C 0.55 13.28 7.60 -12.91 -0.10 13.18 16 11 O -0.59 -15.31 16.44 5.17 0.08 -15.22 16 12 N -0.43 -10.16 2.42 -116.33 -0.28 -10.44 16 13 C -0.35 -7.95 6.84 -15.00 -0.10 -8.06 16 14 H 0.10 2.08 5.43 -33.48 -0.18 1.90 16 15 C 0.07 1.48 5.15 -17.45 -0.09 1.39 16 16 N -0.83 -20.28 11.68 55.50 0.65 -19.63 16 17 Si 0.90 17.18 29.56 -169.99 -5.03 12.15 16 18 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 19 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 20 H -0.26 -4.74 7.11 56.52 0.40 -4.33 16 21 C 0.14 3.04 4.29 -4.04 -0.02 3.03 16 22 C -0.13 -2.33 6.14 -27.88 -0.17 -2.50 16 23 C 0.48 8.37 8.33 36.00 0.30 8.67 16 24 O -0.51 -10.45 16.74 -18.74 -0.31 -10.76 16 25 O -0.52 -7.03 13.42 -39.27 -0.53 -7.56 16 26 S 0.26 4.85 16.91 -107.50 -1.82 3.03 16 27 H 0.06 1.00 6.03 -51.93 -0.31 0.68 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 1.00 6.62 -51.93 -0.34 0.65 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.17 3.27 8.06 -52.49 -0.42 2.84 16 39 H 0.28 6.41 8.31 -40.82 -0.34 6.08 16 40 H 0.11 2.59 6.00 -51.93 -0.31 2.28 16 41 H 0.07 1.74 7.34 -51.93 -0.38 1.36 16 42 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 43 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 44 H 0.40 3.47 9.10 45.56 0.41 3.89 16 LS Contribution 375.67 15.07 5.66 5.66 Total: -1.00 -29.05 375.67 -7.03 -36.08 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -5.32 Total: 10.98 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -0.03 Total: 4.86 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.26 Total: -39.23 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.76 Total: -33.54 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Atomic # 16 Polarization: 4.85 SS G_CDS: -1.82 Total: 3.03 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.05 -7.03 -36.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603339250.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.970 kcal (2) G-P(sol) polarization free energy of solvation -29.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds