Wall clock time and date at job start Sat Apr 11 2020 05:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46988 * 2 1 4 4 N 1.46490 * 109.47301 * 120.00865 * 2 1 3 5 5 C 1.46506 * 120.00004 * 294.12414 * 4 2 1 6 6 C 1.50703 * 109.46883 * 270.00332 * 5 4 2 7 7 H 1.07997 * 120.00344 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99405 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00512 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99608 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47588 * 89.99798 * 10 8 6 12 12 H 1.48499 * 109.46989 * 209.99683 * 10 8 6 13 13 H 1.48505 * 109.46870 * 329.99148 * 10 8 6 14 14 C 1.34773 * 120.00323 * 114.12299 * 4 2 1 15 15 O 1.21611 * 120.00377 * 183.52227 * 14 4 2 16 16 C 1.47434 * 120.00033 * 3.80424 * 14 4 2 17 17 C 1.39738 * 120.20432 * 304.59340 * 16 14 4 18 18 C 1.37744 * 119.92381 * 179.79050 * 17 16 14 19 19 S 1.76201 * 119.82303 * 180.23073 * 18 17 16 20 20 C 1.81392 * 104.44885 * 270.25302 * 19 18 17 21 21 O 1.42101 * 104.27878 * 26.32862 * 19 18 17 22 22 O 1.42103 * 104.27663 * 154.17971 * 19 18 17 23 23 C 1.38611 * 120.35526 * 0.48501 * 18 17 16 24 24 C 1.37961 * 120.42222 * 359.74635 * 23 18 17 25 25 C 1.38966 * 120.06189 * 0.02562 * 24 23 18 26 26 N 1.38873 * 120.17345 * 179.97438 * 25 24 23 27 27 H 1.09005 * 109.46769 * 299.99409 * 1 2 3 28 28 H 1.09000 * 109.47144 * 59.98743 * 1 2 3 29 29 H 1.08999 * 109.47544 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46265 * 240.00438 * 2 1 3 31 31 H 1.09005 * 109.46878 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47970 * 300.00453 * 3 2 1 33 33 H 1.09005 * 109.47260 * 60.01047 * 3 2 1 34 34 H 1.08999 * 109.46747 * 30.00315 * 5 4 2 35 35 H 1.09000 * 109.47057 * 150.00182 * 5 4 2 36 36 H 0.97001 * 119.99886 * 180.02562 * 9 8 6 37 37 H 1.08001 * 120.03403 * 359.97438 * 17 16 14 38 38 H 1.09003 * 109.47186 * 59.99902 * 20 19 18 39 39 H 1.09006 * 109.47107 * 180.02562 * 20 19 18 40 40 H 1.09002 * 109.47458 * 300.00134 * 20 19 18 41 41 H 1.07996 * 119.79297 * 179.72153 * 23 18 17 42 42 H 1.07994 * 119.97294 * 179.97438 * 24 23 18 43 43 H 0.97000 * 119.99767 * 184.98530 * 26 25 24 44 44 H 0.96997 * 120.00264 * 4.97997 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.7737 -0.1199 2.5228 6 6 2.9123 0.7950 2.8938 7 1 3.7361 0.9367 2.2099 8 6 2.9029 1.4503 4.1069 9 7 1.9001 1.2774 4.9400 10 14 4.3139 2.5849 4.5665 11 1 4.0131 3.9626 4.1012 12 1 4.4869 2.5873 6.0413 13 1 5.5636 2.1065 3.9223 14 6 2.6928 -1.8514 1.0757 15 8 3.0423 -2.4575 2.0704 16 6 3.0122 -2.3832 -0.2617 17 6 1.9943 -2.5967 -1.1949 18 6 2.2998 -3.0897 -2.4443 19 16 1.0148 -3.3521 -3.6210 20 6 0.4690 -5.0561 -3.3228 21 8 0.0009 -2.4305 -3.2442 22 8 1.6662 -3.2502 -4.8798 23 6 3.6119 -3.3855 -2.7790 24 6 4.6277 -3.1849 -1.8673 25 6 4.3398 -2.6838 -0.6035 26 7 5.3604 -2.4814 0.3163 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9564 -0.8898 33 1 1.6768 1.9563 0.8901 34 1 0.8424 0.4464 2.5086 35 1 1.6993 -0.9231 3.2559 36 1 1.8933 1.7387 5.7932 37 1 0.9695 -2.3725 -0.9378 38 1 0.1077 -5.1479 -2.2985 39 1 -0.3343 -5.3069 -4.0157 40 1 1.3059 -5.7377 -3.4753 41 1 3.8406 -3.7759 -3.7596 42 1 5.6474 -3.4182 -2.1356 43 1 5.1497 -2.2006 1.2205 44 1 6.2839 -2.6209 0.0546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001631576944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:00 Heat of formation + Delta-G solvation = -76.984257 kcal Electronic energy + Delta-G solvation = -28742.913634 eV Core-core repulsion = 24787.699769 eV Total energy + Delta-G solvation = -3955.213865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.28202 -38.19440 -37.12662 -36.13596 -35.94723 -34.66885 -32.92397 -31.32953 -30.82175 -29.80293 -29.06911 -27.33074 -26.59596 -24.08978 -23.01663 -22.34800 -21.24520 -19.48838 -18.50493 -17.40461 -17.16590 -17.09448 -16.49030 -16.37888 -16.16397 -15.65819 -15.18039 -14.48543 -14.42733 -14.15657 -13.84858 -13.61847 -13.39593 -13.36605 -13.26297 -13.22154 -13.03682 -12.36723 -12.24823 -12.12623 -12.07749 -11.81286 -11.56133 -11.45838 -11.28932 -11.23168 -11.03411 -10.95259 -10.80846 -10.75204 -10.61083 -10.35017 -10.04633 -9.59034 -9.19207 -8.86539 -8.46403 -7.91566 -7.68888 -6.07656 -4.11552 0.02047 1.02358 1.15804 2.83406 3.15063 3.26039 3.32999 3.34972 3.52080 3.75569 3.84558 3.95834 4.07598 4.40010 4.57981 4.62086 4.79425 4.80403 5.06922 5.26457 5.30390 5.38236 5.42810 5.49305 5.64439 5.75643 5.79370 5.90096 5.97557 6.08709 6.15604 6.24743 6.36182 6.44626 6.62018 6.68661 6.99421 7.07836 7.28492 7.42734 7.50853 7.65046 7.88568 8.20115 8.37382 8.82951 8.99693 9.52564 11.00429 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017211 B = 0.003686 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.507470 B = 7595.212686 C = 8348.471353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.122 3.878 3 C -0.153 4.153 4 N -0.578 5.578 5 C 0.244 3.756 6 C -0.521 4.521 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.895 3.105 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.553 3.447 15 O -0.545 6.545 16 C -0.216 4.216 17 C 0.051 3.949 18 C -0.729 4.729 19 S 2.507 3.493 20 C -0.654 4.654 21 O -0.938 6.938 22 O -0.945 6.945 23 C 0.033 3.967 24 C -0.224 4.224 25 C 0.311 3.689 26 N -0.847 5.847 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.144 0.856 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.140 0.860 42 H 0.132 0.868 43 H 0.417 0.583 44 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.580 -10.981 -17.252 20.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.018 3.982 3 C -0.211 4.211 4 N -0.308 5.308 5 C 0.126 3.874 6 C -0.560 4.560 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.723 3.277 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.339 3.661 15 O -0.425 6.425 16 C -0.225 4.225 17 C 0.031 3.969 18 C -0.819 4.819 19 S 2.687 3.313 20 C -0.804 4.804 21 O -0.935 6.935 22 O -0.943 6.943 23 C 0.012 3.988 24 C -0.248 4.248 25 C 0.197 3.803 26 N -0.381 5.381 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.161 0.839 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.251 0.749 44 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 0.378 -10.609 -17.068 20.100 hybrid contribution 1.508 0.265 1.281 1.997 sum 1.886 -10.344 -15.787 18.968 Atomic orbital electron populations 1.22192 0.95261 1.01988 1.02637 1.21253 0.94260 0.94489 0.88248 1.22079 1.01365 0.95360 1.02252 1.48324 1.52611 1.20575 1.09278 1.19302 0.96840 0.94124 0.77167 1.21393 1.06271 1.26081 1.02215 0.92457 1.24914 0.96075 0.96950 0.96103 1.69928 1.30826 1.42964 1.09477 0.86548 0.82551 0.80935 0.77644 1.20639 1.21167 1.20096 1.17931 0.79250 0.81528 0.87383 1.90758 1.54050 1.59106 1.38550 1.19717 0.92833 1.12550 0.97410 1.20833 0.99249 0.87423 0.89425 1.29900 1.13389 1.24739 1.13905 1.04817 0.74750 0.77202 0.74521 1.30277 1.12691 1.25003 1.12404 1.93589 1.58120 1.58325 1.83512 1.93556 1.74966 1.86069 1.39682 1.20612 0.90346 0.89986 0.97813 1.20613 1.00226 1.10665 0.93281 1.17893 0.87542 0.86025 0.88870 1.42851 1.06998 1.73454 1.14830 0.91522 0.91624 0.92773 0.89964 0.92759 0.93082 0.90202 0.94555 0.93814 0.92734 0.83876 0.84987 0.85442 0.85176 0.84251 0.84999 0.74948 0.77037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.04 37.16 0.34 -2.26 16 2 C 0.12 2.15 2.51 -67.94 -0.17 1.98 16 3 C -0.15 -2.70 8.34 37.16 0.31 -2.39 16 4 N -0.58 -12.14 2.38 -168.73 -0.40 -12.54 16 5 C 0.24 6.17 4.47 -5.19 -0.02 6.15 16 6 C -0.52 -14.02 7.85 -34.44 -0.27 -14.29 16 7 H 0.06 1.54 7.52 -52.49 -0.39 1.15 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 10 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 C 0.55 11.42 6.50 -12.52 -0.08 11.34 16 15 O -0.55 -13.07 15.39 5.27 0.08 -12.99 16 16 C -0.22 -3.57 4.82 -104.80 -0.51 -4.07 16 17 C 0.05 0.72 6.84 -39.20 -0.27 0.45 16 18 C -0.73 -8.44 5.65 -39.62 -0.22 -8.66 16 19 S 2.51 24.34 5.79 -107.50 -0.62 23.72 16 20 C -0.65 -3.70 10.79 101.05 1.09 -2.61 16 21 O -0.94 -12.18 17.11 -57.54 -0.98 -13.17 16 22 O -0.95 -11.44 17.11 -57.54 -0.98 -12.43 16 23 C 0.03 0.35 9.45 -39.55 -0.37 -0.03 16 24 C -0.22 -2.52 9.88 -39.41 -0.39 -2.91 16 25 C 0.31 4.44 6.75 -83.61 -0.56 3.87 16 26 N -0.85 -11.33 8.95 32.55 0.29 -11.03 16 27 H 0.07 1.14 6.91 -51.93 -0.36 0.78 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.82 7.22 -51.93 -0.37 0.44 16 30 H 0.08 1.35 4.67 -51.93 -0.24 1.11 16 31 H 0.05 1.00 7.95 -51.93 -0.41 0.59 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.60 6.94 -51.93 -0.36 1.24 16 34 H 0.04 0.94 6.71 -51.93 -0.35 0.59 16 35 H 0.04 1.25 7.37 -51.93 -0.38 0.87 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.14 1.95 5.85 -52.49 -0.31 1.65 16 38 H 0.13 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.13 0.51 8.14 -51.92 -0.42 0.09 16 40 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 41 H 0.14 1.12 7.55 -52.49 -0.40 0.72 16 42 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 43 H 0.42 6.79 6.84 -40.82 -0.28 6.51 16 44 H 0.40 3.84 8.84 -40.82 -0.36 3.48 16 LS Contribution 370.70 15.07 5.59 5.59 Total: -1.00 -35.79 370.70 -8.44 -44.23 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -5.89 Total: 9.28 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -1.23 Total: -11.83 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.63 Total: -48.67 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -1.89 Total: -38.58 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 24.34 SS G_CDS: -0.62 Total: 23.72 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.79 -8.44 -44.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001631576944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.750 kcal (2) G-P(sol) polarization free energy of solvation -35.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds