Wall clock time and date at job start Sat Apr 11 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47418 * 2 1 4 4 C 1.53002 * 109.46976 * 240.00041 * 2 1 3 5 5 O 1.45200 * 109.47516 * 120.00287 * 2 1 3 6 6 C 1.34235 * 117.00155 * 59.99810 * 5 2 1 7 7 O 1.20823 * 119.99714 * 359.97438 * 6 5 2 8 8 C 1.50698 * 119.99961 * 180.02562 * 6 5 2 9 9 O 1.42903 * 109.46726 * 179.97438 * 8 6 5 10 10 C 1.42899 * 113.99902 * 179.97438 * 9 8 6 11 11 C 1.50696 * 109.47473 * 180.02562 * 10 9 8 12 12 O 1.20833 * 119.99655 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00432 * 180.27701 * 11 10 9 14 14 C 1.45201 * 117.00137 * 179.71953 * 13 11 10 15 15 H 1.08993 * 109.47491 * 330.00073 * 14 13 11 16 16 C 1.50706 * 109.46887 * 90.00045 * 14 13 11 17 17 H 1.08001 * 119.99914 * 239.99856 * 16 14 13 18 18 C 1.37878 * 119.99966 * 60.00384 * 16 14 13 19 19 N 1.31515 * 119.99763 * 179.97438 * 18 16 14 20 20 Si 1.86801 * 120.00110 * 359.97438 * 18 16 14 21 21 H 1.48500 * 109.47161 * 90.00506 * 20 18 16 22 22 H 1.48502 * 109.47174 * 210.00360 * 20 18 16 23 23 H 1.48499 * 109.47270 * 330.00657 * 20 18 16 24 24 C 1.50704 * 109.46907 * 209.99697 * 14 13 11 25 25 C 1.34516 * 125.78433 * 145.00355 * 24 14 13 26 26 C 1.41385 * 106.84086 * 179.97438 * 25 24 14 27 27 C 1.34521 * 106.83744 * 0.02562 * 26 25 24 28 28 O 1.34299 * 125.79250 * 324.69650 * 24 14 13 29 29 H 1.09002 * 109.47060 * 299.99766 * 1 2 3 30 30 H 1.08994 * 109.47420 * 59.99646 * 1 2 3 31 31 H 1.09001 * 109.47104 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47469 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46757 * 300.00538 * 3 2 1 34 34 H 1.09002 * 109.46814 * 60.00083 * 3 2 1 35 35 H 1.08996 * 109.47535 * 299.99995 * 4 2 1 36 36 H 1.08994 * 109.47247 * 60.00204 * 4 2 1 37 37 H 1.09005 * 109.46942 * 180.02562 * 4 2 1 38 38 H 1.08997 * 109.47498 * 59.99861 * 8 6 5 39 39 H 1.08995 * 109.47008 * 299.99545 * 8 6 5 40 40 H 1.09000 * 109.47391 * 60.00043 * 10 9 8 41 41 H 1.09006 * 109.47136 * 299.99928 * 10 9 8 42 42 H 0.97002 * 119.99321 * 179.97438 * 19 18 16 43 43 H 1.07996 * 126.58313 * 0.03006 * 25 24 14 44 44 H 1.07992 * 126.58013 * 179.97438 * 26 25 24 45 45 H 1.07996 * 125.78786 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6534 -1.9685 1.3378 7 8 0.9560 -2.5025 0.5083 8 6 2.1175 -2.7435 2.5440 9 8 1.6062 -4.0763 2.4795 10 6 1.9902 -4.9003 3.5820 11 6 1.3992 -6.2759 3.4110 12 8 0.7185 -6.5251 2.4443 13 8 1.6240 -7.2226 4.3356 14 6 1.0182 -8.5226 4.1087 15 1 0.0911 -8.3988 3.5492 16 6 1.9679 -9.3888 3.3220 17 1 1.6727 -9.7766 2.3582 18 6 3.2136 -9.6864 3.8326 19 7 4.0421 -10.4427 3.1463 20 14 3.7244 -9.0152 5.4994 21 1 3.3335 -9.9769 6.5612 22 1 5.1965 -8.8212 5.5249 23 1 3.0494 -7.7141 5.7371 24 6 0.7220 -9.1768 5.4336 25 6 -0.3336 -9.9661 5.7025 26 6 -0.2172 -10.3587 7.0558 27 6 0.9022 -9.7854 7.5330 28 8 1.4700 -9.0754 6.5444 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 1.7534 -2.2585 3.4497 39 1 3.2070 -2.7723 2.5602 40 1 1.6241 -4.4599 4.5095 41 1 3.0771 -4.9742 3.6191 42 1 4.9186 -10.6517 3.5055 43 1 -1.1187 -10.2469 5.0162 44 1 -0.8971 -10.9959 7.6018 45 1 1.2826 -9.8837 8.5389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649268795.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:11 Heat of formation + Delta-G solvation = -176.521091 kcal Electronic energy + Delta-G solvation = -29747.184610 eV Core-core repulsion = 25312.608882 eV Total energy + Delta-G solvation = -4434.575728 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.97724 -41.00194 -39.57379 -38.07325 -36.80208 -35.57879 -34.35119 -33.03736 -32.37520 -30.71797 -29.63003 -27.70790 -27.65585 -27.42214 -26.60056 -23.00536 -22.43068 -21.38029 -20.49945 -19.87349 -19.76064 -17.90159 -17.41517 -17.39813 -16.94182 -16.78503 -16.35174 -16.02689 -15.89142 -15.71893 -15.28163 -14.84349 -14.45775 -14.45576 -13.98446 -13.86992 -13.48359 -13.10346 -12.79321 -12.68230 -12.45733 -12.41628 -12.33020 -12.21362 -12.18666 -12.08103 -11.84794 -11.64754 -11.49894 -11.38374 -11.18376 -10.72539 -10.62979 -10.25120 -10.05833 -9.96009 -9.71449 -9.41331 -9.27154 -9.09328 -8.71718 -7.72179 -6.37488 -4.51156 1.98989 2.07065 2.38674 2.96766 3.05193 3.11502 3.32393 3.40925 3.57088 4.08184 4.20734 4.34592 4.38974 4.45300 4.47843 4.60935 4.83416 4.88961 4.99099 5.12082 5.17477 5.24608 5.25042 5.33988 5.39490 5.41685 5.52897 5.56390 5.58153 5.62601 5.69521 6.00148 6.03908 6.04477 6.23810 6.30135 6.43368 6.54355 6.73331 6.81650 7.08823 7.19527 7.42131 7.70481 7.82506 8.12810 8.58465 8.71738 9.21295 10.69512 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.020459 B = 0.002366 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.280394 B =11832.478141 C =12227.948783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.118 3.882 3 C -0.140 4.140 4 C -0.185 4.185 5 O -0.353 6.353 6 C 0.462 3.538 7 O -0.472 6.472 8 C 0.069 3.931 9 O -0.344 6.344 10 C 0.067 3.933 11 C 0.459 3.541 12 O -0.491 6.491 13 O -0.358 6.358 14 C 0.251 3.749 15 H 0.093 0.907 16 C -0.534 4.534 17 H 0.092 0.908 18 C 0.086 3.914 19 N -0.865 5.865 20 Si 0.889 3.111 21 H -0.272 1.272 22 H -0.298 1.298 23 H -0.220 1.220 24 C 0.034 3.966 25 C -0.227 4.227 26 C -0.205 4.205 27 C -0.076 4.076 28 O -0.165 6.165 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.271 0.729 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.668 20.360 2.401 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.083 3.917 3 C -0.197 4.197 4 C -0.243 4.243 5 O -0.271 6.271 6 C 0.303 3.697 7 O -0.356 6.356 8 C -0.009 4.009 9 O -0.263 6.263 10 C -0.010 4.010 11 C 0.300 3.700 12 O -0.378 6.378 13 O -0.276 6.276 14 C 0.199 3.801 15 H 0.110 0.890 16 C -0.569 4.569 17 H 0.109 0.891 18 C -0.123 4.123 19 N -0.499 5.499 20 Si 0.721 3.279 21 H -0.200 1.200 22 H -0.227 1.227 23 H -0.146 1.146 24 C -0.017 4.017 25 C -0.247 4.247 26 C -0.224 4.224 27 C -0.142 4.142 28 O -0.063 6.063 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.081 0.919 43 H 0.161 0.839 44 H 0.158 0.842 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.812 20.089 1.658 20.352 hybrid contribution 0.395 -0.134 0.927 1.017 sum -2.416 19.955 2.585 20.266 Atomic orbital electron populations 1.22508 0.93899 1.05050 1.02736 1.22212 0.94520 0.92132 0.82859 1.21850 1.02261 0.92481 1.03072 1.22513 1.01789 1.03440 0.96517 1.86483 1.70249 1.24822 1.45569 1.23010 0.78406 0.80812 0.87439 1.90655 1.33406 1.69406 1.42176 1.21703 1.00195 0.84237 0.94747 1.88051 1.73942 1.19806 1.44494 1.21880 1.00755 0.88365 0.89986 1.22545 0.78914 0.86297 0.82200 1.90638 1.35975 1.81272 1.29907 1.86937 1.68969 1.23305 1.48366 1.19300 0.97468 0.77867 0.85429 0.88971 1.21133 0.99047 1.30760 1.05977 0.89053 1.25231 0.95899 0.92744 0.98406 1.69935 1.08018 1.33643 1.38315 0.86542 0.76170 0.82808 0.82355 1.20031 1.22670 1.14565 1.23030 0.90476 1.01145 0.87012 1.21234 1.01300 1.05418 0.96702 1.21634 0.99963 1.05214 0.95599 1.23791 0.96023 1.00762 0.93638 1.84481 1.44491 1.58366 1.18912 0.91953 0.90962 0.89579 0.91407 0.90282 0.91452 0.89546 0.90961 0.91871 0.88703 0.88565 0.89126 0.88875 0.91898 0.83873 0.84189 0.79471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 8.37 37.16 0.31 -1.42 16 2 C 0.12 1.11 1.13 -90.62 -0.10 1.01 16 3 C -0.14 -0.90 8.85 37.16 0.33 -0.57 16 4 C -0.19 -1.80 8.37 37.16 0.31 -1.49 16 5 O -0.35 -3.84 9.89 -39.27 -0.39 -4.23 16 6 C 0.46 5.98 7.34 36.00 0.26 6.24 16 7 O -0.47 -7.76 12.00 -25.47 -0.31 -8.06 16 8 C 0.07 0.76 6.53 36.00 0.24 0.99 16 9 O -0.34 -5.59 9.41 -64.77 -0.61 -6.20 16 10 C 0.07 1.03 6.53 36.00 0.24 1.26 16 11 C 0.46 9.80 8.00 36.00 0.29 10.09 16 12 O -0.49 -12.19 15.72 -25.48 -0.40 -12.59 16 13 O -0.36 -8.21 6.69 -41.99 -0.28 -8.49 16 14 C 0.25 6.16 2.55 -29.03 -0.07 6.09 16 15 H 0.09 2.22 7.15 -51.93 -0.37 1.85 16 16 C -0.53 -15.16 9.51 -34.44 -0.33 -15.49 16 17 H 0.09 2.82 8.06 -52.49 -0.42 2.39 16 18 C 0.09 2.45 5.45 -17.82 -0.10 2.36 16 19 N -0.86 -25.91 13.96 55.43 0.77 -25.14 16 20 Si 0.89 21.84 22.92 -169.99 -3.90 17.94 16 21 H -0.27 -6.62 6.01 56.52 0.34 -6.28 16 22 H -0.30 -7.26 7.11 56.52 0.40 -6.85 16 23 H -0.22 -5.12 4.92 56.52 0.28 -4.84 16 24 C 0.03 0.77 5.34 -35.62 -0.19 0.58 16 25 C -0.23 -4.58 10.81 -39.70 -0.43 -5.01 16 26 C -0.20 -3.61 10.91 -39.70 -0.43 -4.04 16 27 C -0.08 -1.37 11.72 29.42 0.34 -1.03 16 28 O -0.16 -3.64 4.85 2.21 0.01 -3.63 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 1.05 5.89 -51.93 -0.31 0.74 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 1.09 5.89 -51.93 -0.31 0.78 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.14 2.60 8.06 -52.49 -0.42 2.18 16 44 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 45 H 0.19 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 373.91 15.07 5.63 5.63 Total: -1.00 -36.34 373.91 -5.44 -41.78 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.65 Total: 3.42 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 0.67 Total: -0.44 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.77 Total: -25.14 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -1.97 Total: -43.20 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -3.90 Total: 17.94 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.34 -5.44 -41.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649268795.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.740 kcal (2) G-P(sol) polarization free energy of solvation -36.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds