Wall clock time and date at job start Sat Apr 11 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47335 * 2 1 4 4 S 1.81406 * 109.47050 * 179.97438 * 3 2 1 5 5 O 1.42094 * 110.54155 * 73.34806 * 4 3 2 6 6 O 1.42099 * 110.54131 * 296.59734 * 4 3 2 7 7 N 1.65600 * 104.44925 * 184.97254 * 4 3 2 8 8 C 1.39046 * 120.00213 * 298.85747 * 7 4 3 9 9 C 1.39216 * 119.93460 * 134.00664 * 8 7 4 10 10 C 1.37611 * 120.07023 * 180.27253 * 9 8 7 11 11 C 1.39799 * 119.92928 * 359.46187 * 10 9 8 12 12 C 1.47519 * 120.06926 * 180.25140 * 11 10 9 13 13 O 1.21597 * 120.00196 * 148.98525 * 12 11 10 14 14 N 1.34782 * 119.99656 * 328.98312 * 12 11 10 15 15 C 1.46492 * 120.00394 * 3.84947 * 14 12 11 16 16 C 1.46504 * 119.99743 * 183.84707 * 14 12 11 17 17 C 1.50699 * 109.46900 * 89.99920 * 16 14 12 18 18 H 1.08004 * 120.00450 * 0.02562 * 17 16 14 19 19 C 1.37877 * 119.99954 * 179.97438 * 17 16 14 20 20 N 1.31516 * 119.99884 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00175 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47203 * 59.99982 * 21 19 17 23 23 H 1.48501 * 109.47477 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47216 * 300.00239 * 21 19 17 25 25 C 1.39790 * 119.86085 * 0.56364 * 11 10 9 26 26 C 1.37611 * 119.93407 * 359.70767 * 25 11 10 27 27 H 1.09000 * 109.46731 * 59.99440 * 1 2 3 28 28 H 1.08996 * 109.47054 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47060 * 299.99982 * 1 2 3 30 30 H 1.08999 * 109.46624 * 239.99797 * 2 1 3 31 31 H 1.09000 * 109.46731 * 120.00559 * 2 1 3 32 32 H 1.09004 * 109.46774 * 60.00031 * 3 2 1 33 33 H 1.08992 * 109.47536 * 299.99683 * 3 2 1 34 34 H 0.96999 * 120.00130 * 118.85120 * 7 4 3 35 35 H 1.08000 * 119.96739 * 0.02562 * 9 8 7 36 36 H 1.08003 * 120.03325 * 179.72560 * 10 9 8 37 37 H 1.08997 * 109.47188 * 93.82945 * 15 14 12 38 38 H 1.08995 * 109.47516 * 213.83469 * 15 14 12 39 39 H 1.09002 * 109.47001 * 333.83212 * 15 14 12 40 40 H 1.08999 * 109.47384 * 210.00133 * 16 14 12 41 41 H 1.09003 * 109.47377 * 330.00267 * 16 14 12 42 42 H 0.97002 * 120.00075 * 180.02562 * 20 19 17 43 43 H 1.07997 * 120.03576 * 179.68837 * 25 11 10 44 44 H 1.07995 * 119.96685 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 16 3.8541 1.4423 0.0008 5 8 4.3532 1.0608 -1.2738 6 8 4.3522 0.8467 1.1909 7 7 4.2674 3.0399 0.1397 8 6 3.8785 3.9464 -0.8403 9 6 3.3250 5.1703 -0.4743 10 6 2.9340 6.0672 -1.4420 11 6 3.1036 5.7530 -2.7936 12 6 2.6907 6.7145 -3.8334 13 8 3.2877 6.7591 -4.8918 14 7 1.6517 7.5435 -3.6102 15 6 0.9860 7.5488 -2.3053 16 6 1.1880 8.4393 -4.6727 17 6 0.1311 7.7432 -5.4910 18 1 -0.1659 6.7346 -5.2441 19 6 -0.4575 8.3943 -6.5543 20 7 -0.0963 9.6227 -6.8547 21 14 -1.7681 7.5318 -7.5681 22 1 -2.9112 7.1680 -6.6929 23 1 -2.2380 8.4397 -8.6452 24 1 -1.1964 6.3017 -8.1727 25 6 3.6592 4.5230 -3.1579 26 6 4.0431 3.6280 -2.1857 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6769 1.9563 -0.8899 34 1 4.7806 3.3434 0.9048 35 1 3.1986 5.4144 0.5701 36 1 2.5006 7.0146 -1.1575 37 1 1.4258 8.3227 -1.6763 38 1 -0.0766 7.7506 -2.4402 39 1 1.1135 6.5770 -1.8284 40 1 0.7682 9.3422 -4.2293 41 1 2.0273 8.7063 -5.3149 42 1 -0.5106 10.0809 -7.6025 43 1 3.7869 4.2753 -4.2013 44 1 4.4720 2.6775 -2.4665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076204060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:56 Heat of formation + Delta-G solvation = -64.805543 kcal Electronic energy + Delta-G solvation = -27296.284603 eV Core-core repulsion = 23341.598847 eV Total energy + Delta-G solvation = -3954.685756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.20707 -38.47541 -37.47638 -36.40526 -35.35132 -35.22682 -34.97626 -32.69649 -31.14315 -29.72356 -28.17015 -27.61174 -26.14959 -23.78784 -22.97674 -22.40999 -22.08048 -19.81546 -19.23994 -18.13943 -18.07223 -16.87196 -16.74984 -16.56061 -16.27214 -15.79727 -15.21396 -14.86360 -14.62893 -14.37699 -14.26055 -14.04349 -13.75298 -13.59697 -13.18573 -13.12044 -12.97927 -12.78680 -12.52851 -12.42007 -12.33456 -12.15594 -11.92045 -11.90732 -11.64151 -11.46289 -11.40599 -11.21596 -10.96987 -10.92490 -10.62688 -10.39963 -10.19910 -9.70283 -9.11048 -9.04730 -8.49713 -8.45535 -7.72205 -6.07913 -4.13277 -0.27415 0.89395 1.27214 2.17429 3.15835 3.26473 3.29490 3.34407 3.37197 3.75754 3.76342 4.00952 4.03623 4.28685 4.41518 4.58799 4.67553 4.78576 4.82836 4.89273 4.98256 5.12916 5.14265 5.25286 5.26637 5.43623 5.47449 5.50199 5.56007 5.73603 5.76755 5.77282 5.95273 6.05753 6.14557 6.22428 6.42547 6.51264 6.83638 7.01577 7.39324 7.46126 7.87944 8.18224 8.31198 8.83628 8.99645 9.51913 11.00167 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014983 B = 0.002736 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.295148 B =10232.263461 C =11159.974164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.624 4.624 4 S 2.604 3.396 5 O -0.945 6.945 6 O -0.954 6.954 7 N -1.056 6.056 8 C 0.144 3.856 9 C -0.141 4.141 10 C -0.088 4.088 11 C -0.122 4.122 12 C 0.544 3.456 13 O -0.535 6.535 14 N -0.593 5.593 15 C 0.065 3.935 16 C 0.244 3.756 17 C -0.530 4.530 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 C -0.044 4.044 26 C -0.162 4.162 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.425 0.575 35 H 0.132 0.868 36 H 0.151 0.849 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.034 0.966 41 H 0.047 0.953 42 H 0.265 0.735 43 H 0.140 0.860 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.458 -14.880 19.979 25.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.754 4.754 4 S 2.699 3.301 5 O -0.934 6.934 6 O -0.945 6.945 7 N -0.806 5.806 8 C 0.048 3.952 9 C -0.163 4.163 10 C -0.107 4.107 11 C -0.126 4.126 12 C 0.330 3.670 13 O -0.413 6.413 14 N -0.324 5.324 15 C -0.078 4.078 16 C 0.126 3.874 17 C -0.569 4.569 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.533 5.533 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.063 4.063 26 C -0.183 4.183 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.263 0.737 35 H 0.150 0.850 36 H 0.168 0.832 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.158 0.842 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.260 -15.490 19.112 24.967 hybrid contribution -1.237 0.282 -0.114 1.273 sum 3.023 -15.208 18.997 24.522 Atomic orbital electron populations 1.21721 0.93525 1.02466 1.02737 1.21273 0.99051 0.91534 1.03666 1.30571 1.25897 1.06457 1.12476 1.05383 0.77909 0.72219 0.74563 1.93585 1.77039 1.80520 1.42295 1.93614 1.78252 1.74254 1.48332 1.53171 1.67456 1.27404 1.32598 1.17529 0.98471 0.91511 0.87650 1.21059 1.01041 0.94216 0.99995 1.21926 0.96728 1.00477 0.91608 1.20398 1.01936 0.96239 0.94022 1.18101 0.81110 0.81150 0.86596 1.90774 1.54481 1.69647 1.26418 1.48070 1.30610 1.39386 1.14327 1.22280 0.99097 1.00878 0.85576 1.19343 0.95604 0.87956 0.84535 1.21389 1.20967 1.00729 1.13801 0.92440 1.24935 0.97187 0.94914 0.96997 1.69921 1.42754 1.11509 1.29091 0.86546 0.81518 0.79510 0.79770 1.20245 1.21133 1.20117 1.21195 0.93401 0.91306 1.00405 1.21873 1.02652 1.02837 0.90891 0.91889 0.91825 0.92167 0.90236 0.90230 0.84603 0.84324 0.73738 0.85046 0.83173 0.93169 0.90877 0.90684 0.94787 0.93523 0.92583 0.84172 0.82230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.12 -0.72 5.94 -26.73 -0.16 -0.88 16 3 C -0.62 -3.84 5.92 37.15 0.22 -3.62 16 4 S 2.60 22.12 5.35 -107.50 -0.57 21.55 16 5 O -0.94 -11.06 15.14 -57.54 -0.87 -11.93 16 6 O -0.95 -10.36 18.08 -57.54 -1.04 -11.40 16 7 N -1.06 -8.11 5.64 32.41 0.18 -7.93 16 8 C 0.14 1.44 6.01 -83.86 -0.50 0.93 16 9 C -0.14 -1.31 9.95 -39.45 -0.39 -1.71 16 10 C -0.09 -1.04 7.43 -39.23 -0.29 -1.33 16 11 C -0.12 -1.92 5.49 -104.95 -0.58 -2.49 16 12 C 0.54 11.38 7.44 -12.47 -0.09 11.29 16 13 O -0.54 -13.57 16.29 5.28 0.09 -13.49 16 14 N -0.59 -12.32 2.86 -184.20 -0.53 -12.85 16 15 C 0.07 0.97 8.78 59.84 0.53 1.49 16 16 C 0.24 6.30 5.21 -5.19 -0.03 6.27 16 17 C -0.53 -14.82 9.39 -34.44 -0.32 -15.15 16 18 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 21 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 25 C -0.04 -0.64 9.58 -39.23 -0.38 -1.01 16 26 C -0.16 -1.98 9.21 -39.44 -0.36 -2.34 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.14 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.14 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.43 2.34 8.92 -34.47 -0.31 2.04 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 36 H 0.15 1.55 4.69 -52.48 -0.25 1.30 16 37 H 0.05 0.61 7.38 -51.93 -0.38 0.23 16 38 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 39 H 0.07 0.92 4.77 -51.93 -0.25 0.67 16 40 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 41 H 0.05 1.36 7.37 -51.93 -0.38 0.98 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.14 2.13 7.94 -52.49 -0.42 1.71 16 44 H 0.16 1.95 5.59 -52.49 -0.29 1.66 16 LS Contribution 377.22 15.07 5.68 5.68 Total: -1.00 -37.19 377.22 -9.48 -46.67 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.04 Total: 0.06 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -2.09 Total: -7.36 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.39 Total: -46.32 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -1.83 Total: -36.82 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 22.12 SS G_CDS: -0.57 Total: 21.55 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.19 -9.48 -46.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076204060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.136 kcal (2) G-P(sol) polarization free energy of solvation -37.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds