Wall clock time and date at job start Sat Apr 11 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47260 * 2 1 4 4 N 1.46498 * 109.46927 * 179.97438 * 3 2 1 5 5 C 1.46492 * 120.00111 * 265.75066 * 4 3 2 6 6 C 1.53005 * 109.47304 * 266.04381 * 5 4 3 7 7 N 1.46504 * 109.47458 * 181.73103 * 6 5 4 8 8 C 1.34774 * 120.00076 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99979 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99783 * 180.02562 * 8 7 6 11 11 S 1.80996 * 109.46907 * 180.02562 * 10 8 7 12 12 C 1.76195 * 99.99765 * 180.02562 * 11 10 8 13 13 H 1.07998 * 120.00330 * 359.97438 * 12 11 10 14 14 C 1.38802 * 120.00000 * 179.97438 * 12 11 10 15 15 N 1.31632 * 119.99924 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00149 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47055 * 59.99841 * 16 14 12 18 18 H 1.48497 * 109.46985 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47010 * 300.00028 * 16 14 12 20 20 C 1.34779 * 119.99622 * 85.75725 * 4 3 2 21 21 O 1.21613 * 120.00129 * 0.45157 * 20 4 3 22 22 C 1.47382 * 119.99751 * 180.45247 * 20 4 3 23 23 C 1.47022 * 127.19115 * 351.54106 * 22 20 4 24 24 C 1.34184 * 105.95287 * 180.15181 * 23 22 20 25 25 O 1.34214 * 109.12054 * 359.60347 * 24 23 22 26 26 C 1.33653 * 110.91397 * 0.26989 * 25 24 23 27 27 H 1.08997 * 109.47307 * 299.99341 * 1 2 3 28 28 H 1.08995 * 109.47094 * 60.00048 * 1 2 3 29 29 H 1.09002 * 109.46875 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47024 * 240.00304 * 2 1 3 31 31 H 1.08999 * 109.47479 * 120.00792 * 2 1 3 32 32 H 1.08997 * 109.46422 * 60.00117 * 3 2 1 33 33 H 1.09000 * 109.46856 * 300.00420 * 3 2 1 34 34 H 1.08998 * 109.47501 * 26.04617 * 5 4 3 35 35 H 1.08998 * 109.47335 * 146.04754 * 5 4 3 36 36 H 1.08999 * 109.47508 * 301.73571 * 6 5 4 37 37 H 1.09007 * 109.46522 * 61.73618 * 6 5 4 38 38 H 0.97001 * 119.99235 * 0.02562 * 7 6 5 39 39 H 1.08999 * 109.46959 * 300.00044 * 10 8 7 40 40 H 1.09001 * 109.47067 * 59.99580 * 10 8 7 41 41 H 0.97000 * 120.00054 * 179.97438 * 15 14 12 42 42 H 1.07996 * 127.02565 * 0.02562 * 23 22 20 43 43 H 1.07995 * 125.44095 * 179.86979 * 24 23 22 44 44 H 1.07998 * 125.80341 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2370 1.5365 1.2661 6 6 4.5782 3.0007 1.5502 7 7 5.3460 3.0907 2.7947 8 6 5.7584 4.2915 3.2468 9 8 5.4936 5.2977 2.6236 10 6 6.5487 4.3839 4.5267 11 16 6.9509 6.1161 4.8636 12 6 7.8483 5.9346 6.3690 13 1 7.9960 4.9531 6.7946 14 6 8.3656 7.0530 7.0078 15 7 8.1860 8.2493 6.4888 16 14 9.3165 6.8606 8.6042 17 1 10.5034 5.9988 8.3726 18 1 9.7599 8.1956 9.0801 19 1 8.4425 6.2345 9.6285 20 6 4.1793 1.3558 -1.1632 21 8 3.5717 1.2861 -2.2143 22 6 5.6531 1.3457 -1.1618 23 6 6.5425 1.5927 -0.0175 24 6 7.7929 1.4824 -0.4917 25 8 7.7425 1.1862 -1.7998 26 6 6.4770 1.0999 -2.2210 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.6188 1.1442 2.0735 35 1 5.1569 0.9559 1.1978 36 1 5.1706 3.4020 0.7280 37 1 3.6574 3.5757 1.6491 38 1 5.5574 2.2859 3.2933 39 1 5.9568 3.9821 5.3490 40 1 7.4697 3.8093 4.4273 41 1 8.5472 9.0310 6.9354 42 1 6.2494 1.8190 0.9970 43 1 8.6957 1.6073 0.0877 44 1 6.1604 0.8741 -3.2286 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688458866.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:09 Heat of formation + Delta-G solvation = -39.093840 kcal Electronic energy + Delta-G solvation = -26715.052897 eV Core-core repulsion = 22761.482084 eV Total energy + Delta-G solvation = -3953.570813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.88692 -40.25429 -39.20014 -36.81816 -35.20183 -33.70366 -32.68909 -32.46525 -30.44538 -29.97664 -28.23964 -26.88606 -25.52589 -23.84845 -23.02013 -22.29598 -21.44747 -20.64417 -19.66843 -18.11404 -17.71399 -17.12141 -16.69258 -16.46091 -16.23221 -15.98481 -15.58188 -15.10714 -14.97046 -14.83734 -14.70109 -14.30986 -13.98426 -13.77282 -13.48778 -13.26897 -12.81822 -12.77930 -12.60637 -12.50257 -12.36533 -12.27351 -11.88662 -11.68907 -11.50900 -11.08682 -11.06977 -11.02260 -10.80981 -10.30818 -10.05311 -9.87384 -9.55901 -9.20706 -9.11023 -9.04451 -8.94529 -8.28827 -6.54800 -6.25168 -3.96467 1.08571 1.75944 2.41945 2.68301 2.97235 2.99840 3.07848 3.20543 3.25359 3.29023 3.65433 4.16676 4.18392 4.36022 4.45703 4.49711 4.63390 4.67040 4.71391 4.92886 4.97461 5.08435 5.09945 5.10050 5.17822 5.27037 5.35097 5.44193 5.49357 5.55677 5.67493 5.69189 5.77911 5.80977 5.81856 5.88903 5.93912 6.06360 6.18038 6.42118 6.67233 6.98975 7.53765 7.55973 7.84424 8.31050 8.49957 9.19954 10.82132 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014382 B = 0.002343 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.363434 B =11947.206917 C =13247.308434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.115 3.885 4 N -0.600 5.600 5 C 0.077 3.923 6 C 0.094 3.906 7 N -0.740 5.740 8 C 0.533 3.467 9 O -0.511 6.511 10 C -0.153 4.153 11 S -0.059 6.059 12 C -0.537 4.537 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.594 3.406 21 O -0.540 6.540 22 C -0.246 4.246 23 C -0.214 4.214 24 C -0.029 4.029 25 O -0.174 6.174 26 C 0.052 3.948 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.398 0.602 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.178 0.822 43 H 0.210 0.790 44 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.031 -20.738 -12.887 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C -0.007 4.007 4 N -0.332 5.332 5 C -0.047 4.047 6 C -0.031 4.031 7 N -0.397 5.397 8 C 0.319 3.681 9 O -0.385 6.385 10 C -0.304 4.304 11 S 0.167 5.833 12 C -0.685 4.685 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.502 5.502 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 C 0.384 3.616 21 O -0.419 6.419 22 C -0.251 4.251 23 C -0.233 4.233 24 C -0.095 4.095 25 O -0.069 6.069 26 C -0.019 4.019 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.124 0.876 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.232 0.768 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.195 0.805 43 H 0.227 0.773 44 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -8.532 -18.905 -14.647 25.392 hybrid contribution 0.861 -1.530 2.315 2.905 sum -7.671 -20.436 -12.332 25.071 Atomic orbital electron populations 1.21688 0.94952 1.01989 1.02102 1.21875 0.96321 0.96958 1.02560 1.21620 0.78119 0.97335 1.03670 1.47557 1.06748 1.73128 1.05769 1.22410 0.99226 0.96592 0.86430 1.21823 0.97288 0.96314 0.87676 1.45921 1.58357 1.09566 1.25830 1.20340 0.78922 0.82510 0.86340 1.90728 1.54857 1.35011 1.57858 1.23531 1.01754 1.08607 0.96492 1.85449 1.70416 0.96745 1.30669 1.22814 1.40261 0.96053 1.09386 0.90952 1.24997 0.95919 0.94460 0.98193 1.70005 1.43196 0.98070 1.38959 0.86223 0.79808 0.77566 0.81900 1.19930 1.20805 1.19930 1.17291 0.85616 0.75465 0.83204 1.90790 1.69748 1.50578 1.30739 1.21377 0.93955 1.14753 0.95002 1.23841 0.91995 1.06828 1.00605 1.24131 1.00266 1.03882 0.81250 1.83844 1.28978 1.68265 1.25820 1.24384 0.79891 0.98193 0.99401 0.92495 0.92400 0.92453 0.91449 0.91881 0.90022 0.89686 0.89291 0.87592 0.90527 0.90995 0.76767 0.89121 0.89125 0.92082 0.80491 0.77341 0.76709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.14 -1.02 6.23 -26.73 -0.17 -1.18 16 3 C 0.11 0.95 5.35 -4.04 -0.02 0.93 16 4 N -0.60 -5.62 2.49 -174.98 -0.44 -6.05 16 5 C 0.08 0.58 4.97 -4.04 -0.02 0.56 16 6 C 0.09 1.00 4.80 -4.04 -0.02 0.98 16 7 N -0.74 -8.27 5.02 -60.28 -0.30 -8.57 16 8 C 0.53 9.12 7.85 -10.98 -0.09 9.03 16 9 O -0.51 -11.15 15.86 5.56 0.09 -11.06 16 10 C -0.15 -2.86 6.16 36.01 0.22 -2.64 16 11 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 12 C -0.54 -14.86 9.50 30.94 0.29 -14.57 16 13 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 14 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 15 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 16 Si 0.92 20.93 29.55 -169.99 -5.02 15.91 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 C 0.59 6.93 7.62 -12.54 -0.10 6.84 16 21 O -0.54 -7.73 16.58 5.27 0.09 -7.64 16 22 C -0.25 -2.58 6.07 -103.27 -0.63 -3.20 16 23 C -0.21 -1.97 7.60 -37.45 -0.28 -2.25 16 24 C -0.03 -0.25 12.03 29.30 0.35 0.11 16 25 O -0.17 -1.61 10.52 7.65 0.08 -1.53 16 26 C 0.05 0.48 11.91 30.08 0.36 0.83 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.56 8.04 -51.93 -0.42 0.14 16 33 H 0.08 0.82 7.55 -51.93 -0.39 0.43 16 34 H 0.09 0.49 8.04 -51.93 -0.42 0.08 16 35 H 0.11 0.71 4.45 -51.93 -0.23 0.48 16 36 H 0.08 0.97 6.62 -51.93 -0.34 0.63 16 37 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 38 H 0.40 3.01 8.47 -40.82 -0.35 2.67 16 39 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 40 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 41 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.18 1.47 3.37 -52.49 -0.18 1.29 16 43 H 0.21 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.22 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 384.55 15.07 5.80 5.80 Total: -1.00 -36.70 384.55 -7.11 -43.81 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.10 Total: 1.29 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 0.18 Total: -3.15 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.00 Total: -39.64 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.26 Total: -20.23 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.70 -7.11 -43.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688458866.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.711 kcal (2) G-P(sol) polarization free energy of solvation -36.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds