Wall clock time and date at job start Sat Apr 11 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47260 * 2 1 4 4 N 1.46498 * 109.46927 * 179.97438 * 3 2 1 5 5 C 1.46492 * 120.00111 * 265.75066 * 4 3 2 6 6 C 1.53005 * 109.47304 * 266.04381 * 5 4 3 7 7 N 1.46504 * 109.47458 * 181.73103 * 6 5 4 8 8 C 1.34774 * 120.00076 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99979 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99783 * 180.02562 * 8 7 6 11 11 S 1.80996 * 109.46907 * 180.02562 * 10 8 7 12 12 C 1.76195 * 99.99765 * 180.02562 * 11 10 8 13 13 H 1.07998 * 120.00330 * 359.97438 * 12 11 10 14 14 C 1.38802 * 120.00000 * 179.97438 * 12 11 10 15 15 N 1.31632 * 119.99924 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00149 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47055 * 59.99841 * 16 14 12 18 18 H 1.48497 * 109.46985 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47010 * 300.00028 * 16 14 12 20 20 C 1.34779 * 119.99622 * 85.75725 * 4 3 2 21 21 O 1.21613 * 120.00129 * 0.45157 * 20 4 3 22 22 C 1.47382 * 119.99751 * 180.45247 * 20 4 3 23 23 C 1.47022 * 127.19115 * 351.54106 * 22 20 4 24 24 C 1.34184 * 105.95287 * 180.15181 * 23 22 20 25 25 O 1.34214 * 109.12054 * 359.60347 * 24 23 22 26 26 C 1.33653 * 110.91397 * 0.26989 * 25 24 23 27 27 H 1.08997 * 109.47307 * 299.99341 * 1 2 3 28 28 H 1.08995 * 109.47094 * 60.00048 * 1 2 3 29 29 H 1.09002 * 109.46875 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47024 * 240.00304 * 2 1 3 31 31 H 1.08999 * 109.47479 * 120.00792 * 2 1 3 32 32 H 1.08997 * 109.46422 * 60.00117 * 3 2 1 33 33 H 1.09000 * 109.46856 * 300.00420 * 3 2 1 34 34 H 1.08998 * 109.47501 * 26.04617 * 5 4 3 35 35 H 1.08998 * 109.47335 * 146.04754 * 5 4 3 36 36 H 1.08999 * 109.47508 * 301.73571 * 6 5 4 37 37 H 1.09007 * 109.46522 * 61.73618 * 6 5 4 38 38 H 0.97001 * 119.99235 * 0.02562 * 7 6 5 39 39 H 1.08999 * 109.46959 * 300.00044 * 10 8 7 40 40 H 1.09001 * 109.47067 * 59.99580 * 10 8 7 41 41 H 0.97000 * 120.00054 * 179.97438 * 15 14 12 42 42 H 1.07996 * 127.02565 * 0.02562 * 23 22 20 43 43 H 1.07995 * 125.44095 * 179.86979 * 24 23 22 44 44 H 1.07998 * 125.80341 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2370 1.5365 1.2661 6 6 4.5782 3.0007 1.5502 7 7 5.3460 3.0907 2.7947 8 6 5.7584 4.2915 3.2468 9 8 5.4936 5.2977 2.6236 10 6 6.5487 4.3839 4.5267 11 16 6.9509 6.1161 4.8636 12 6 7.8483 5.9346 6.3690 13 1 7.9960 4.9531 6.7946 14 6 8.3656 7.0530 7.0078 15 7 8.1860 8.2493 6.4888 16 14 9.3165 6.8606 8.6042 17 1 10.5034 5.9988 8.3726 18 1 9.7599 8.1956 9.0801 19 1 8.4425 6.2345 9.6285 20 6 4.1793 1.3558 -1.1632 21 8 3.5717 1.2861 -2.2143 22 6 5.6531 1.3457 -1.1618 23 6 6.5425 1.5927 -0.0175 24 6 7.7929 1.4824 -0.4917 25 8 7.7425 1.1862 -1.7998 26 6 6.4770 1.0999 -2.2210 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.6188 1.1442 2.0735 35 1 5.1569 0.9559 1.1978 36 1 5.1706 3.4020 0.7280 37 1 3.6574 3.5757 1.6491 38 1 5.5574 2.2859 3.2933 39 1 5.9568 3.9821 5.3490 40 1 7.4697 3.8093 4.4273 41 1 8.5472 9.0310 6.9354 42 1 6.2494 1.8190 0.9970 43 1 8.6957 1.6073 0.0877 44 1 6.1604 0.8741 -3.2286 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688458866.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:09 Heat of formation + Delta-G solvation = -64.782020 kcal Electronic energy + Delta-G solvation = -26716.166820 eV Core-core repulsion = 22761.482084 eV Total energy + Delta-G solvation = -3954.684736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.58772 -41.13160 -40.46248 -37.75028 -36.08530 -34.63497 -34.54812 -33.36370 -31.64904 -30.72891 -29.30531 -27.67591 -27.53693 -24.70874 -23.74687 -22.97878 -22.09325 -21.89773 -20.46027 -19.82486 -18.70999 -17.92541 -17.64675 -17.59637 -17.09166 -16.99262 -16.85096 -16.64867 -16.03243 -15.85245 -15.65851 -15.46287 -15.12457 -14.71011 -14.56622 -14.37877 -14.15905 -13.79844 -13.54570 -13.35185 -13.16490 -13.13969 -12.95596 -12.85392 -12.81008 -12.61169 -12.34787 -12.16756 -11.73117 -11.62020 -11.18960 -11.10307 -11.01141 -10.82668 -10.23306 -10.17388 -9.97471 -9.67061 -8.63626 -8.32024 -6.09686 0.32505 1.07193 1.27339 1.45805 1.46929 1.55741 1.62786 1.76025 2.03660 2.17710 2.29836 2.43159 3.02344 3.34374 3.47572 3.70010 3.72378 3.81762 3.94525 4.03024 4.04120 4.10235 4.32661 4.35607 4.36979 4.47984 4.54051 4.56214 4.57172 4.67963 4.73490 4.88490 4.94881 5.02256 5.15764 5.20040 5.27078 5.30202 5.34929 5.44670 5.51911 5.97271 6.21108 6.22291 6.49510 7.00073 7.09580 7.25641 8.76723 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014382 B = 0.002343 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.363434 B =11947.206917 C =13247.308434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C 0.110 3.890 4 N -0.596 5.596 5 C 0.084 3.916 6 C 0.100 3.900 7 N -0.707 5.707 8 C 0.537 3.463 9 O -0.566 6.566 10 C -0.128 4.128 11 S -0.157 6.157 12 C -0.543 4.543 13 H 0.086 0.914 14 C 0.012 3.988 15 N -0.913 5.913 16 Si 0.997 3.003 17 H -0.261 1.261 18 H -0.282 1.282 19 H -0.262 1.262 20 C 0.587 3.413 21 O -0.577 6.577 22 C -0.270 4.270 23 C -0.223 4.223 24 C -0.029 4.029 25 O -0.179 6.179 26 C 0.053 3.947 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.422 0.578 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.270 0.730 42 H 0.186 0.814 43 H 0.238 0.762 44 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.506 -23.442 -11.067 26.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.011 4.011 4 N -0.327 5.327 5 C -0.039 4.039 6 C -0.025 4.025 7 N -0.363 5.363 8 C 0.323 3.677 9 O -0.443 6.443 10 C -0.279 4.279 11 S 0.070 5.930 12 C -0.691 4.691 13 H 0.104 0.896 14 C -0.193 4.193 15 N -0.549 5.549 16 Si 0.819 3.181 17 H -0.185 1.185 18 H -0.208 1.208 19 H -0.186 1.186 20 C 0.378 3.622 21 O -0.459 6.459 22 C -0.274 4.274 23 C -0.241 4.241 24 C -0.095 4.095 25 O -0.073 6.073 26 C -0.018 4.018 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.083 0.917 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.260 0.740 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.079 0.921 42 H 0.202 0.798 43 H 0.254 0.746 44 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -8.017 -21.688 -12.802 26.430 hybrid contribution 0.643 -0.770 1.656 1.936 sum -7.374 -22.458 -11.146 26.134 Atomic orbital electron populations 1.21679 0.94045 1.02506 1.02296 1.21795 0.97039 0.95936 1.02135 1.21741 0.77594 0.98149 1.03652 1.47632 1.07244 1.71989 1.05818 1.22476 1.00525 0.94403 0.86460 1.21812 0.96085 0.98336 0.86299 1.45494 1.56537 1.08590 1.25691 1.20090 0.78681 0.83357 0.85617 1.90725 1.57108 1.37279 1.59216 1.23366 1.03592 1.02816 0.98131 1.85674 1.71109 1.04750 1.31475 1.23173 1.39876 0.96739 1.09316 0.89624 1.26126 0.96961 0.93985 1.02195 1.70184 1.44727 0.99089 1.40922 0.85023 0.78505 0.77673 0.76929 1.18536 1.20771 1.18621 1.17581 0.86218 0.75043 0.83328 1.90762 1.70529 1.52515 1.32073 1.21479 0.93579 1.16160 0.96214 1.23928 0.92072 1.07448 1.00656 1.24720 1.01104 1.02692 0.80959 1.83865 1.28906 1.68181 1.26377 1.24781 0.79770 0.97216 1.00003 0.91402 0.93125 0.91778 0.93591 0.90464 0.88073 0.91682 0.86040 0.86135 0.92575 0.92181 0.73978 0.86823 0.86535 0.92109 0.79754 0.74616 0.75062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.91 16 2 C -0.13 -1.75 6.23 30.59 0.19 -1.56 16 3 C 0.11 1.73 5.35 86.38 0.46 2.19 16 4 N -0.60 -10.47 2.49 -825.76 -2.05 -12.52 16 5 C 0.08 1.03 4.97 86.38 0.43 1.46 16 6 C 0.10 1.93 4.80 86.38 0.41 2.35 16 7 N -0.71 -13.78 5.02 -463.03 -2.32 -16.11 16 8 C 0.54 17.57 7.85 87.66 0.69 18.26 16 9 O -0.57 -24.90 15.86 -3.03 -0.05 -24.95 16 10 C -0.13 -4.52 6.16 71.24 0.44 -4.08 16 11 S -0.16 -8.37 20.57 -56.49 -1.16 -9.53 16 12 C -0.54 -29.79 9.50 67.95 0.65 -29.15 16 13 H 0.09 4.29 7.80 -2.91 -0.02 4.26 16 14 C 0.01 0.66 5.49 84.86 0.47 1.13 16 15 N -0.91 -55.20 13.22 21.65 0.29 -54.92 16 16 Si 1.00 42.29 29.55 68.60 2.03 44.32 16 17 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 18 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 20 C 0.59 13.64 7.62 86.65 0.66 14.30 16 21 O -0.58 -17.04 16.58 -4.07 -0.07 -17.11 16 22 C -0.27 -5.46 6.07 -18.99 -0.12 -5.58 16 23 C -0.22 -3.70 7.60 23.65 0.18 -3.52 16 24 C -0.03 -0.43 12.03 66.89 0.80 0.37 16 25 O -0.18 -3.06 10.52 4.47 0.05 -3.02 16 26 C 0.05 0.94 11.91 67.39 0.80 1.74 16 27 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.10 1.18 8.04 -2.39 -0.02 1.16 16 33 H 0.06 1.29 7.55 -2.39 -0.02 1.27 16 34 H 0.12 0.79 8.04 -2.39 -0.02 0.77 16 35 H 0.12 1.21 4.45 -2.39 -0.01 1.20 16 36 H 0.06 1.38 6.62 -2.39 -0.02 1.37 16 37 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.42 4.49 8.47 -92.71 -0.79 3.71 16 39 H 0.11 3.53 8.14 -2.40 -0.02 3.51 16 40 H 0.12 3.54 8.14 -2.39 -0.02 3.52 16 41 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 42 H 0.19 2.58 3.37 -2.91 -0.01 2.57 16 43 H 0.24 1.90 8.06 -2.91 -0.02 1.87 16 44 H 0.23 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -83.76 384.55 3.73 -80.02 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.25 Total: 16.79 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 6.78 Total: -2.98 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -4.09 Total: -83.54 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -0.07 Total: -45.07 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.53 kcal Total: -83.76 3.73 -80.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688458866.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.240 kcal (2) G-P(sol) polarization free energy of solvation -83.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds