Wall clock time and date at job start Sat Apr 11 2020 05:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 C 1.52994 * 109.47211 * 120.00258 * 2 1 3 5 5 H 1.09008 * 109.47091 * 59.99894 * 4 2 1 6 6 C 1.53002 * 109.47418 * 299.99949 * 4 2 1 7 7 N 1.46498 * 109.47531 * 185.00152 * 6 4 2 8 8 C 1.34771 * 120.00149 * 179.97438 * 7 6 4 9 9 O 1.21610 * 119.99999 * 0.02562 * 8 7 6 10 10 C 1.47375 * 120.00141 * 180.02562 * 8 7 6 11 11 C 1.47020 * 127.19385 * 179.97438 * 10 8 7 12 12 C 1.34179 * 105.95633 * 179.73768 * 11 10 8 13 13 O 1.34221 * 109.12156 * 0.22524 * 12 11 10 14 14 C 1.33647 * 110.90928 * 0.02562 * 13 12 11 15 15 N 1.46498 * 109.47245 * 179.97438 * 4 2 1 16 16 C 1.34774 * 120.00135 * 274.99952 * 15 4 2 17 17 O 1.21285 * 120.00155 * 0.02562 * 16 15 4 18 18 C 1.50701 * 120.00071 * 179.97438 * 16 15 4 19 19 S 1.81002 * 109.47173 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00221 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99461 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00334 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00271 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47055 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.46980 * 120.00281 * 24 22 20 27 27 H 1.48500 * 109.47314 * 240.00568 * 24 22 20 28 28 H 1.09008 * 109.47180 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46959 * 299.99662 * 1 2 3 30 30 H 1.08995 * 109.47268 * 59.99808 * 1 2 3 31 31 H 1.08998 * 109.46528 * 240.00018 * 2 1 3 32 32 H 1.08999 * 109.47153 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47049 * 300.00142 * 3 2 1 34 34 H 1.08998 * 109.46881 * 60.00290 * 3 2 1 35 35 H 1.08999 * 109.46869 * 65.00059 * 6 4 2 36 36 H 1.09004 * 109.46661 * 304.99964 * 6 4 2 37 37 H 0.97006 * 119.99708 * 359.97438 * 7 6 4 38 38 H 1.08002 * 127.02488 * 0.02562 * 11 10 8 39 39 H 1.08003 * 125.44096 * 180.26664 * 12 11 10 40 40 H 1.07999 * 125.80479 * 180.02562 * 14 13 12 41 41 H 0.97001 * 120.00193 * 95.00136 * 15 4 2 42 42 H 1.08996 * 109.47331 * 299.99896 * 18 16 15 43 43 H 1.08996 * 109.47138 * 60.00787 * 18 16 15 44 44 H 0.96998 * 119.99845 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6766 -1.7490 1.2491 6 6 1.5301 -0.0001 2.4985 7 7 2.1142 -0.6177 3.6916 8 6 1.8062 -0.1440 4.9151 9 8 1.0429 0.7959 5.0288 10 6 2.3943 -0.7649 6.1153 11 6 2.1704 -0.3788 7.5161 12 6 2.9050 -1.2251 8.2540 13 8 3.5490 -2.0744 7.4382 14 6 3.2625 -1.8163 6.1586 15 7 3.5050 -0.7218 1.2488 16 6 4.1784 -1.6782 0.5794 17 8 3.5716 -2.5382 -0.0233 18 6 5.6854 -1.6784 0.5786 19 16 6.2881 -3.0763 -0.4007 20 6 8.0262 -2.8395 -0.2347 21 1 8.4052 -2.0115 0.3460 22 6 8.9081 -3.7177 -0.8491 23 7 8.4459 -4.7271 -1.5564 24 14 10.7507 -3.4662 -0.6737 25 1 11.0092 -2.2683 0.1650 26 1 11.3541 -4.6604 -0.0296 27 1 11.3537 -3.2703 -2.0166 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 0.4438 -0.0771 2.5444 36 1 1.8185 1.0502 2.4548 37 1 2.7228 -1.3677 3.6009 38 1 1.5394 0.4197 7.8777 39 1 2.9676 -1.2237 9.3322 40 1 3.6483 -2.3525 5.3041 41 1 3.9904 -0.0338 1.7305 42 1 6.0487 -0.7473 0.1438 43 1 6.0493 -1.7678 1.6021 44 1 9.0622 -5.3406 -1.9861 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688991845.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:13 Heat of formation + Delta-G solvation = -69.202984 kcal Electronic energy + Delta-G solvation = -26774.526754 eV Core-core repulsion = 22819.650311 eV Total energy + Delta-G solvation = -3954.876443 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.85186 -40.25034 -39.21573 -37.20585 -34.49920 -33.25776 -33.08930 -32.47500 -30.46626 -29.57300 -27.88474 -27.26269 -25.54868 -24.53995 -23.12368 -21.78990 -20.90468 -20.37847 -19.57229 -18.70431 -17.89516 -16.83894 -16.58669 -16.54954 -16.42143 -15.71859 -15.25844 -15.11794 -14.94305 -14.84543 -14.41489 -14.12078 -14.05107 -13.45639 -13.35064 -13.27794 -13.23916 -13.00988 -12.70929 -12.48566 -12.17769 -12.13949 -11.95567 -11.34757 -11.13883 -11.10722 -11.06805 -10.80494 -10.65272 -10.32024 -10.15442 -9.85574 -9.53462 -9.36998 -9.13167 -9.12598 -9.00915 -8.29455 -6.55769 -6.26737 -3.97625 1.02286 1.74931 2.58646 2.79274 2.93307 3.00813 3.09932 3.18216 3.24923 3.29010 3.62475 4.15660 4.24433 4.32819 4.36684 4.66288 4.75341 4.82759 4.97779 5.04075 5.07533 5.08907 5.14665 5.31500 5.33970 5.47644 5.48356 5.56706 5.60810 5.69005 5.71782 5.80350 5.82348 5.91843 5.95421 6.05168 6.07062 6.13369 6.24395 6.51614 6.60725 7.17678 7.55014 7.57824 7.92600 8.30534 8.49563 9.19114 10.80654 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008834 B = 0.002998 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3168.941822 B = 9338.107223 C =11894.171931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C -0.150 4.150 4 C 0.141 3.859 5 H 0.096 0.904 6 C 0.110 3.890 7 N -0.725 5.725 8 C 0.589 3.411 9 O -0.538 6.538 10 C -0.240 4.240 11 C -0.166 4.166 12 C -0.041 4.041 13 O -0.172 6.172 14 C 0.028 3.972 15 N -0.736 5.736 16 C 0.533 3.467 17 O -0.513 6.513 18 C -0.155 4.155 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.402 0.598 38 H 0.159 0.841 39 H 0.209 0.791 40 H 0.212 0.788 41 H 0.399 0.601 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.850 10.402 14.671 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.125 4.125 3 C -0.208 4.208 4 C 0.035 3.965 5 H 0.114 0.886 6 C -0.014 4.014 7 N -0.378 5.378 8 C 0.377 3.623 9 O -0.416 6.416 10 C -0.244 4.244 11 C -0.186 4.186 12 C -0.107 4.107 13 O -0.066 6.066 14 C -0.043 4.043 15 N -0.391 5.391 16 C 0.319 3.681 17 O -0.386 6.386 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.237 0.763 38 H 0.177 0.823 39 H 0.226 0.774 40 H 0.229 0.771 41 H 0.233 0.767 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.193 9.257 13.727 22.471 hybrid contribution 2.341 1.281 0.856 2.802 sum -12.853 10.538 14.583 22.111 Atomic orbital electron populations 1.21889 0.94570 1.02186 1.02084 1.21454 0.95961 0.96691 0.98401 1.21902 1.01518 0.95544 1.01807 1.21183 0.80865 1.01018 0.93434 0.88595 1.21858 0.99188 0.97871 0.82467 1.45849 1.49627 1.36819 1.05492 1.17248 0.80549 0.82558 0.81986 1.90786 1.36000 1.28189 1.86630 1.21508 1.06091 1.02020 0.94814 1.22771 1.03085 1.02278 0.90434 1.23987 0.97793 0.92329 0.96550 1.83828 1.57118 1.49596 1.16092 1.24567 0.97158 0.97137 0.85421 1.46137 1.06026 1.31566 1.55356 1.20341 0.89590 0.80406 0.77755 1.90717 1.69838 1.36604 1.41455 1.23543 0.93413 1.07483 1.06084 1.85404 1.04080 1.29679 1.64054 1.22900 0.91043 1.16391 1.38078 0.90895 1.24990 0.99640 0.94453 0.94469 1.70023 1.35286 1.14132 1.30790 0.86123 0.83007 0.78290 0.78122 1.19612 1.20545 1.20549 0.92282 0.92376 0.92253 0.89636 0.92322 0.92498 0.92494 0.89623 0.90196 0.76302 0.82324 0.77448 0.77132 0.76719 0.89228 0.89296 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.84 37.16 0.33 -0.93 16 2 C -0.10 -1.05 2.90 -90.62 -0.26 -1.31 16 3 C -0.15 -1.34 8.69 37.16 0.32 -1.02 16 4 C 0.14 1.41 1.95 -67.93 -0.13 1.28 16 5 H 0.10 1.12 7.58 -51.92 -0.39 0.72 16 6 C 0.11 0.99 4.51 -4.04 -0.02 0.97 16 7 N -0.73 -6.63 5.38 -61.40 -0.33 -6.96 16 8 C 0.59 6.71 7.81 -12.54 -0.10 6.61 16 9 O -0.54 -7.94 16.98 5.27 0.09 -7.85 16 10 C -0.24 -2.39 6.31 -103.28 -0.65 -3.04 16 11 C -0.17 -1.49 11.01 -37.45 -0.41 -1.90 16 12 C -0.04 -0.29 12.03 29.30 0.35 0.06 16 13 O -0.17 -1.48 10.52 7.65 0.08 -1.40 16 14 C 0.03 0.23 11.61 30.08 0.35 0.58 16 15 N -0.74 -8.21 3.75 -53.81 -0.20 -8.41 16 16 C 0.53 8.70 7.81 -10.99 -0.09 8.62 16 17 O -0.51 -10.43 15.52 5.55 0.09 -10.34 16 18 C -0.15 -2.85 6.16 36.01 0.22 -2.63 16 19 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 20 C -0.54 -14.78 9.50 30.94 0.29 -14.48 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 23 N -0.87 -25.56 13.22 55.49 0.73 -24.83 16 24 Si 0.92 20.94 29.55 -169.99 -5.02 15.92 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 29 H 0.06 0.44 6.54 -51.93 -0.34 0.10 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.56 7.61 -51.93 -0.39 0.17 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.45 6.32 -51.93 -0.33 0.13 16 35 H 0.09 0.78 6.71 -51.93 -0.35 0.43 16 36 H 0.08 0.72 6.17 -51.93 -0.32 0.40 16 37 H 0.40 3.18 7.11 -40.82 -0.29 2.89 16 38 H 0.16 1.30 8.06 -52.49 -0.42 0.87 16 39 H 0.21 0.66 8.06 -52.48 -0.42 0.24 16 40 H 0.21 1.12 7.47 -52.49 -0.39 0.73 16 41 H 0.40 3.63 8.60 -40.82 -0.35 3.28 16 42 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 43 H 0.09 1.48 8.14 -51.92 -0.42 1.06 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 386.67 15.07 5.83 5.83 Total: -1.00 -35.95 386.67 -6.93 -42.87 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.09 Total: 4.13 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 0.11 Total: -5.24 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.20 Total: -40.19 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: 0.26 Total: -19.59 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.95 -6.93 -42.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688991845.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.332 kcal (2) G-P(sol) polarization free energy of solvation -35.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds