Wall clock time and date at job start Sat Apr 11 2020 05:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 C 1.52994 * 109.47211 * 120.00258 * 2 1 3 5 5 H 1.09008 * 109.47091 * 59.99894 * 4 2 1 6 6 C 1.53002 * 109.47418 * 299.99949 * 4 2 1 7 7 N 1.46498 * 109.47531 * 185.00152 * 6 4 2 8 8 C 1.34771 * 120.00149 * 179.97438 * 7 6 4 9 9 O 1.21610 * 119.99999 * 0.02562 * 8 7 6 10 10 C 1.47375 * 120.00141 * 180.02562 * 8 7 6 11 11 C 1.47020 * 127.19385 * 179.97438 * 10 8 7 12 12 C 1.34179 * 105.95633 * 179.73768 * 11 10 8 13 13 O 1.34221 * 109.12156 * 0.22524 * 12 11 10 14 14 C 1.33647 * 110.90928 * 0.02562 * 13 12 11 15 15 N 1.46498 * 109.47245 * 179.97438 * 4 2 1 16 16 C 1.34774 * 120.00135 * 274.99952 * 15 4 2 17 17 O 1.21285 * 120.00155 * 0.02562 * 16 15 4 18 18 C 1.50701 * 120.00071 * 179.97438 * 16 15 4 19 19 S 1.81002 * 109.47173 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00221 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99461 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00334 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00271 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47055 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.46980 * 120.00281 * 24 22 20 27 27 H 1.48500 * 109.47314 * 240.00568 * 24 22 20 28 28 H 1.09008 * 109.47180 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46959 * 299.99662 * 1 2 3 30 30 H 1.08995 * 109.47268 * 59.99808 * 1 2 3 31 31 H 1.08998 * 109.46528 * 240.00018 * 2 1 3 32 32 H 1.08999 * 109.47153 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47049 * 300.00142 * 3 2 1 34 34 H 1.08998 * 109.46881 * 60.00290 * 3 2 1 35 35 H 1.08999 * 109.46869 * 65.00059 * 6 4 2 36 36 H 1.09004 * 109.46661 * 304.99964 * 6 4 2 37 37 H 0.97006 * 119.99708 * 359.97438 * 7 6 4 38 38 H 1.08002 * 127.02488 * 0.02562 * 11 10 8 39 39 H 1.08003 * 125.44096 * 180.26664 * 12 11 10 40 40 H 1.07999 * 125.80479 * 180.02562 * 14 13 12 41 41 H 0.97001 * 120.00193 * 95.00136 * 15 4 2 42 42 H 1.08996 * 109.47331 * 299.99896 * 18 16 15 43 43 H 1.08996 * 109.47138 * 60.00787 * 18 16 15 44 44 H 0.96998 * 119.99845 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6766 -1.7490 1.2491 6 6 1.5301 -0.0001 2.4985 7 7 2.1142 -0.6177 3.6916 8 6 1.8062 -0.1440 4.9151 9 8 1.0429 0.7959 5.0288 10 6 2.3943 -0.7649 6.1153 11 6 2.1704 -0.3788 7.5161 12 6 2.9050 -1.2251 8.2540 13 8 3.5490 -2.0744 7.4382 14 6 3.2625 -1.8163 6.1586 15 7 3.5050 -0.7218 1.2488 16 6 4.1784 -1.6782 0.5794 17 8 3.5716 -2.5382 -0.0233 18 6 5.6854 -1.6784 0.5786 19 16 6.2881 -3.0763 -0.4007 20 6 8.0262 -2.8395 -0.2347 21 1 8.4052 -2.0115 0.3460 22 6 8.9081 -3.7177 -0.8491 23 7 8.4459 -4.7271 -1.5564 24 14 10.7507 -3.4662 -0.6737 25 1 11.0092 -2.2683 0.1650 26 1 11.3541 -4.6604 -0.0296 27 1 11.3537 -3.2703 -2.0166 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 0.4438 -0.0771 2.5444 36 1 1.8185 1.0502 2.4548 37 1 2.7228 -1.3677 3.6009 38 1 1.5394 0.4197 7.8777 39 1 2.9676 -1.2237 9.3322 40 1 3.6483 -2.3525 5.3041 41 1 3.9904 -0.0338 1.7305 42 1 6.0487 -0.7473 0.1438 43 1 6.0493 -1.7678 1.6021 44 1 9.0622 -5.3406 -1.9861 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688991845.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:13 Heat of formation + Delta-G solvation = -94.941018 kcal Electronic energy + Delta-G solvation = -26775.642839 eV Core-core repulsion = 22819.650311 eV Total energy + Delta-G solvation = -3955.992528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.48257 -41.28149 -40.27077 -38.27561 -35.35139 -34.57468 -34.35246 -33.79695 -31.27965 -30.73112 -28.82396 -28.01443 -27.62699 -25.39535 -23.89844 -22.40667 -22.08056 -21.21235 -20.42501 -19.90574 -19.31555 -17.95583 -17.69886 -17.37572 -17.12402 -16.86755 -16.67649 -16.35696 -16.18463 -15.89688 -15.63331 -15.13796 -14.98796 -14.70802 -14.55881 -14.22720 -14.13854 -13.85508 -13.68295 -13.56159 -13.31620 -13.13940 -12.91532 -12.88850 -12.72271 -12.58134 -12.26316 -11.92038 -11.69830 -11.49049 -11.24826 -11.14609 -10.91744 -10.86717 -10.23960 -10.20797 -10.11114 -9.74458 -8.63225 -8.33696 -6.10266 0.33002 1.13006 1.28561 1.41711 1.48262 1.58599 1.62855 1.95023 2.11568 2.25202 2.28792 2.32490 3.00945 3.33488 3.49493 3.62333 3.76362 3.85033 3.97043 4.02001 4.11360 4.21436 4.28576 4.33948 4.51194 4.55256 4.58899 4.71293 4.74747 4.80846 4.85783 4.99630 5.01320 5.02438 5.19280 5.25702 5.33251 5.35186 5.44049 5.44967 5.51829 5.99059 6.21426 6.39375 6.47993 7.08633 7.09546 7.24890 8.75401 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008834 B = 0.002998 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3168.941822 B = 9338.107223 C =11894.171931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C -0.147 4.147 4 C 0.148 3.852 5 H 0.083 0.917 6 C 0.118 3.882 7 N -0.716 5.716 8 C 0.589 3.411 9 O -0.578 6.578 10 C -0.267 4.267 11 C -0.194 4.194 12 C -0.026 4.026 13 O -0.180 6.180 14 C 0.038 3.962 15 N -0.709 5.709 16 C 0.541 3.459 17 O -0.557 6.557 18 C -0.132 4.132 19 S -0.146 6.146 20 C -0.545 4.545 21 H 0.082 0.918 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.995 3.005 25 H -0.257 1.257 26 H -0.274 1.274 27 H -0.276 1.276 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.409 0.591 38 H 0.159 0.841 39 H 0.246 0.754 40 H 0.236 0.764 41 H 0.414 0.586 42 H 0.105 0.895 43 H 0.113 0.887 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.087 11.815 16.483 24.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.205 4.205 4 C 0.043 3.957 5 H 0.101 0.899 6 C -0.006 4.006 7 N -0.367 5.367 8 C 0.379 3.621 9 O -0.459 6.459 10 C -0.272 4.272 11 C -0.214 4.214 12 C -0.091 4.091 13 O -0.074 6.074 14 C -0.033 4.033 15 N -0.363 5.363 16 C 0.327 3.673 17 O -0.434 6.434 18 C -0.283 4.283 19 S 0.081 5.919 20 C -0.692 4.692 21 H 0.100 0.900 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.817 3.183 25 H -0.181 1.181 26 H -0.200 1.200 27 H -0.202 1.202 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.246 0.754 38 H 0.176 0.824 39 H 0.262 0.738 40 H 0.252 0.748 41 H 0.251 0.749 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.430 10.699 15.561 23.767 hybrid contribution 2.001 0.893 0.351 2.219 sum -12.429 11.592 15.912 23.282 Atomic orbital electron populations 1.21867 0.93176 1.02264 1.03078 1.21392 0.97156 0.97048 0.96709 1.21885 1.01087 0.94695 1.02794 1.21192 0.79547 1.00632 0.94378 0.89932 1.21803 0.99391 0.97887 0.81507 1.45771 1.49267 1.36673 1.05030 1.17457 0.79955 0.82015 0.82709 1.90760 1.37920 1.30038 1.87183 1.21566 1.07526 1.03319 0.94788 1.22963 1.04465 1.03441 0.90521 1.24660 0.95942 0.90697 0.97815 1.83858 1.57277 1.49926 1.16387 1.24979 0.96028 0.96288 0.85979 1.45823 1.06634 1.30234 1.53607 1.19960 0.88728 0.80784 0.77862 1.90716 1.70275 1.38699 1.43706 1.23389 0.94813 1.04293 1.05805 1.85562 1.04927 1.34667 1.66742 1.23235 0.91465 1.16584 1.37957 0.90004 1.26069 1.05033 0.93999 0.93932 1.70181 1.37166 1.15327 1.32053 0.84956 0.76286 0.78731 0.78307 1.18067 1.19971 1.20180 0.92715 0.91014 0.91626 0.92681 0.92927 0.92064 0.91022 0.89157 0.89473 0.75449 0.82358 0.73803 0.74809 0.74932 0.87673 0.86877 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.84 71.98 0.64 -1.64 16 2 C -0.10 -1.96 2.90 -10.80 -0.03 -1.99 16 3 C -0.15 -2.37 8.69 71.98 0.63 -1.74 16 4 C 0.15 2.80 1.95 44.99 0.09 2.88 16 5 H 0.08 1.88 7.58 -2.38 -0.02 1.86 16 6 C 0.12 1.90 4.51 86.38 0.39 2.29 16 7 N -0.72 -11.91 5.38 -466.42 -2.51 -14.42 16 8 C 0.59 12.87 7.81 86.65 0.68 13.55 16 9 O -0.58 -16.79 16.98 -4.06 -0.07 -16.86 16 10 C -0.27 -5.04 6.31 -18.99 -0.12 -5.16 16 11 C -0.19 -3.29 11.01 23.65 0.26 -3.03 16 12 C -0.03 -0.31 12.03 66.89 0.80 0.49 16 13 O -0.18 -2.71 10.52 4.45 0.05 -2.66 16 14 C 0.04 0.55 11.61 67.40 0.78 1.33 16 15 N -0.71 -14.66 3.75 -442.53 -1.66 -16.32 16 16 C 0.54 17.28 7.81 87.66 0.68 17.96 16 17 O -0.56 -23.02 15.52 -3.05 -0.05 -23.07 16 18 C -0.13 -4.71 6.16 71.24 0.44 -4.27 16 19 S -0.15 -7.69 20.57 -56.49 -1.16 -8.85 16 20 C -0.54 -29.97 9.50 67.95 0.65 -29.32 16 21 H 0.08 4.19 7.80 -2.91 -0.02 4.17 16 22 C 0.01 0.80 5.49 84.86 0.47 1.27 16 23 N -0.91 -54.66 13.22 21.65 0.29 -54.37 16 24 Si 0.99 42.57 29.55 68.60 2.03 44.59 16 25 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 27 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 28 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.07 0.93 6.54 -2.39 -0.02 0.92 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 0.90 7.61 -2.39 -0.02 0.89 16 33 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.07 0.95 6.32 -2.39 -0.02 0.94 16 35 H 0.09 1.48 6.71 -2.39 -0.02 1.46 16 36 H 0.09 1.36 6.17 -2.38 -0.01 1.34 16 37 H 0.41 5.67 7.11 -92.70 -0.66 5.01 16 38 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 39 H 0.25 0.77 8.06 -2.91 -0.02 0.75 16 40 H 0.24 1.92 7.47 -2.91 -0.02 1.90 16 41 H 0.41 6.42 8.60 -92.71 -0.80 5.62 16 42 H 0.11 3.46 8.14 -2.40 -0.02 3.44 16 43 H 0.11 3.51 8.14 -2.40 -0.02 3.49 16 44 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -80.55 386.67 2.85 -77.70 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -0.41 Total: 21.65 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 6.35 Total: -7.39 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -3.88 Total: -85.12 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -0.07 Total: -42.59 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: -7.69 SS G_CDS: -1.16 Total: -8.85 kcal Total: -80.55 2.85 -77.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688991845.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.243 kcal (2) G-P(sol) polarization free energy of solvation -80.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds