Wall clock time and date at job start Sat Apr 11 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21278 * 120.00286 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.99538 * 179.97438 * 8 7 6 11 11 O 1.42905 * 109.46778 * 179.97438 * 10 8 7 12 12 C 1.35900 * 116.99945 * 179.97438 * 11 10 8 13 13 C 1.38760 * 120.04995 * 359.72902 * 12 11 10 14 14 C 1.38131 * 119.97280 * 179.74307 * 13 12 11 15 15 C 1.38271 * 120.06468 * 0.55237 * 14 13 12 16 16 C 1.38363 * 120.10011 * 359.69552 * 15 14 13 17 17 Cl 1.73591 * 119.98734 * 180.02562 * 16 15 14 18 18 C 1.38286 * 120.02764 * 0.02890 * 16 15 14 19 19 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 20 20 C 1.36931 * 119.99788 * 84.99932 * 19 4 2 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 4 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 4 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 29 29 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 30 30 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 32 32 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 34 34 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 35 35 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 36 36 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 37 37 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 38 38 H 1.09000 * 109.47726 * 299.99386 * 10 8 7 39 39 H 1.08998 * 109.47231 * 60.00064 * 10 8 7 40 40 H 1.08005 * 120.01820 * 0.02562 * 13 12 11 41 41 H 1.08003 * 119.96578 * 180.25380 * 14 13 12 42 42 H 1.08003 * 119.94596 * 179.72806 * 15 14 13 43 43 H 1.07995 * 120.03419 * 180.02562 * 18 16 15 44 44 H 0.97000 * 119.99792 * 264.99726 * 19 4 2 45 45 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 7 2.1141 -2.8884 2.3806 8 6 1.8060 -4.1849 2.5819 9 8 1.0449 -4.7517 1.8268 10 6 2.4073 -4.9302 3.7455 11 8 1.9309 -6.2775 3.7455 12 6 2.3808 -7.0910 4.7368 13 6 3.2672 -6.6040 5.6868 14 6 3.7194 -7.4307 6.6968 15 6 3.2985 -8.7465 6.7555 16 6 2.4186 -9.2366 5.8067 17 17 1.8916 -10.8888 5.8837 18 6 1.9590 -8.4109 4.7972 19 7 3.5050 -0.7218 1.2488 20 6 4.1901 0.3528 1.7498 21 1 3.6506 1.2005 2.1454 22 6 5.5783 0.3498 1.7547 23 7 6.2359 -0.6835 1.2730 24 14 6.5130 1.8124 2.4451 25 1 5.5483 2.8366 2.9205 26 1 7.3617 1.3669 3.5792 27 1 7.3717 2.3968 1.3839 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 0.4436 -2.1651 1.3387 36 1 1.8183 -2.6512 0.3177 37 1 2.7232 -2.4351 2.9844 38 1 3.4936 -4.9287 3.6558 39 1 2.1190 -4.4433 4.6770 40 1 3.6000 -5.5776 5.6392 41 1 4.4061 -7.0503 7.4385 42 1 3.6566 -9.3925 7.5435 43 1 1.2720 -8.7932 4.0568 44 1 3.9897 -1.4834 0.8938 45 1 7.2059 -0.6854 1.2761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698977856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:31 Heat of formation + Delta-G solvation = -53.145347 kcal Electronic energy + Delta-G solvation = -26526.769221 eV Core-core repulsion = 22570.545383 eV Total energy + Delta-G solvation = -3956.223838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.58402 -39.36777 -37.86891 -37.17902 -36.48605 -33.97680 -33.19498 -31.42641 -30.63303 -30.30497 -29.07428 -27.32101 -26.09978 -23.86939 -23.13761 -22.60408 -21.76992 -20.35034 -19.34227 -18.71371 -17.61049 -16.90876 -16.49659 -16.48318 -16.01115 -15.52170 -15.21079 -15.11457 -14.55735 -14.15204 -14.00436 -13.86249 -13.66701 -13.47742 -13.27956 -13.10017 -12.78151 -12.32127 -12.16428 -12.08413 -11.91228 -11.67486 -11.54469 -11.20295 -11.16725 -11.08092 -11.02268 -10.89604 -10.70240 -10.35184 -10.14578 -10.02486 -9.69735 -9.60700 -9.17103 -9.00589 -8.76669 -8.55474 -7.11494 -5.90017 -3.19513 0.81100 1.03813 1.72015 2.58429 2.71916 3.32345 3.33049 3.40178 3.42146 3.73413 4.41481 4.46617 4.69252 4.71162 4.78084 4.90616 4.97856 5.00696 5.10772 5.26817 5.31083 5.46244 5.49744 5.57820 5.69078 5.82653 5.82942 5.93393 5.95583 6.02403 6.11926 6.18366 6.20301 6.32263 6.37996 6.47118 6.56590 6.59110 6.80612 7.00745 7.04622 7.24054 7.59866 7.74385 8.27073 8.37687 9.39464 9.93513 10.29516 11.31671 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013213 B = 0.002258 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.582438 B =12395.896327 C =14167.855035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.170 3.830 5 H 0.055 0.945 6 C 0.115 3.885 7 N -0.707 5.707 8 C 0.513 3.487 9 O -0.531 6.531 10 C 0.039 3.961 11 O -0.285 6.285 12 C 0.148 3.852 13 C -0.206 4.206 14 C -0.065 4.065 15 C -0.152 4.152 16 C 0.004 3.996 17 Cl -0.065 7.065 18 C -0.144 4.144 19 N -0.722 5.722 20 C -0.237 4.237 21 H 0.074 0.926 22 C -0.011 4.011 23 N -0.929 5.929 24 Si 0.902 3.098 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.031 0.969 34 H 0.040 0.960 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.412 0.588 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.143 0.857 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.897 -11.777 9.792 17.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.196 4.196 4 C 0.059 3.941 5 H 0.073 0.927 6 C -0.009 4.009 7 N -0.360 5.360 8 C 0.297 3.703 9 O -0.408 6.408 10 C -0.039 4.039 11 O -0.196 6.196 12 C 0.101 3.899 13 C -0.225 4.225 14 C -0.083 4.083 15 C -0.171 4.171 16 C -0.023 4.023 17 Cl -0.036 7.036 18 C -0.164 4.164 19 N -0.363 5.363 20 C -0.368 4.368 21 H 0.092 0.908 22 C -0.207 4.207 23 N -0.577 5.577 24 Si 0.733 3.267 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.248 0.752 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.161 0.839 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.559 -12.203 9.172 17.501 hybrid contribution 1.238 0.855 0.560 1.605 sum -7.322 -11.348 9.732 16.646 Atomic orbital electron populations 1.21945 0.96813 1.00992 1.00991 1.21728 0.93579 0.97823 0.99996 1.21817 1.04193 0.94591 0.99045 1.20560 0.86409 0.90957 0.96148 0.92746 1.21791 0.97377 0.93174 0.88519 1.45810 1.48749 1.10113 1.31330 1.19843 0.82132 0.82504 0.85795 1.90724 1.35662 1.67595 1.46772 1.22587 1.00559 0.81483 0.99305 1.86162 1.66168 1.20997 1.46308 1.18827 0.92987 0.90175 0.87898 1.21475 1.01658 1.01960 0.97372 1.20922 0.97812 0.92483 0.97108 1.20960 0.99742 0.96508 0.99915 1.20546 0.98633 0.86062 0.97065 1.98378 1.89540 1.17666 1.98023 1.20206 1.04543 0.91050 1.00571 1.42483 0.98720 1.21260 1.73882 1.19236 0.88750 0.96422 1.32392 0.90823 1.24738 0.96499 0.97712 1.01771 1.69668 1.06914 1.29780 1.51291 0.86201 0.80058 0.82123 0.78288 1.20535 1.21933 1.21911 0.93166 0.93514 0.93026 0.91840 0.89503 0.94953 0.94044 0.91350 0.91659 0.75195 0.88346 0.88814 0.84418 0.84572 0.84817 0.83924 0.78094 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.84 37.16 0.33 -1.68 16 2 C -0.11 -1.77 2.69 -90.62 -0.24 -2.02 16 3 C -0.14 -2.39 8.26 37.16 0.31 -2.09 16 4 C 0.17 2.92 2.18 -67.93 -0.15 2.77 16 5 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 6 C 0.12 1.83 4.73 -4.04 -0.02 1.81 16 7 N -0.71 -10.66 5.39 -60.29 -0.32 -10.99 16 8 C 0.51 7.99 7.91 -10.99 -0.09 7.91 16 9 O -0.53 -10.30 16.50 -14.35 -0.24 -10.54 16 10 C 0.04 0.47 5.22 36.01 0.19 0.66 16 11 O -0.28 -3.96 9.67 -39.34 -0.38 -4.34 16 12 C 0.15 1.76 6.69 -39.22 -0.26 1.49 16 13 C -0.21 -2.01 9.04 -39.43 -0.36 -2.37 16 14 C -0.06 -0.55 10.04 -39.61 -0.40 -0.95 16 15 C -0.15 -1.34 9.83 -39.52 -0.39 -1.73 16 16 C 0.00 0.04 6.32 -39.52 -0.25 -0.21 16 17 Cl -0.07 -0.61 28.95 -51.86 -1.50 -2.11 16 18 C -0.14 -1.64 9.77 -39.40 -0.38 -2.02 16 19 N -0.72 -15.41 4.44 -53.42 -0.24 -15.64 16 20 C -0.24 -5.69 7.57 -15.06 -0.11 -5.80 16 21 H 0.07 1.74 7.40 -52.49 -0.39 1.36 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 23 N -0.93 -25.65 13.06 55.49 0.72 -24.93 16 24 Si 0.90 20.70 29.55 -169.99 -5.02 15.67 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.66 6.55 -51.93 -0.34 0.32 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.09 1.78 6.01 -51.93 -0.31 1.47 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.03 6.71 -51.92 -0.35 0.68 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.41 6.03 8.14 -40.82 -0.33 5.70 16 38 H 0.10 1.05 7.65 -51.93 -0.40 0.65 16 39 H 0.09 0.86 7.67 -51.93 -0.40 0.47 16 40 H 0.14 1.12 6.30 -52.48 -0.33 0.79 16 41 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 42 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 43 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 44 H 0.39 9.08 7.80 -40.82 -0.32 8.76 16 45 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -29.36 387.09 -9.59 -38.96 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -6.53 Total: 12.67 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -1.92 Total: -4.59 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.16 Total: -51.56 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.62 Total: -14.88 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.36 -9.59 -38.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698977856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.189 kcal (2) G-P(sol) polarization free energy of solvation -29.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds