Wall clock time and date at job start Sat Apr 11 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21278 * 120.00286 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.99538 * 179.97438 * 8 7 6 11 11 O 1.42905 * 109.46778 * 179.97438 * 10 8 7 12 12 C 1.35900 * 116.99945 * 179.97438 * 11 10 8 13 13 C 1.38760 * 120.04995 * 359.72902 * 12 11 10 14 14 C 1.38131 * 119.97280 * 179.74307 * 13 12 11 15 15 C 1.38271 * 120.06468 * 0.55237 * 14 13 12 16 16 C 1.38363 * 120.10011 * 359.69552 * 15 14 13 17 17 Cl 1.73591 * 119.98734 * 180.02562 * 16 15 14 18 18 C 1.38286 * 120.02764 * 0.02890 * 16 15 14 19 19 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 20 20 C 1.36931 * 119.99788 * 84.99932 * 19 4 2 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 4 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 4 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 29 29 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 30 30 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 32 32 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 34 34 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 35 35 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 36 36 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 37 37 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 38 38 H 1.09000 * 109.47726 * 299.99386 * 10 8 7 39 39 H 1.08998 * 109.47231 * 60.00064 * 10 8 7 40 40 H 1.08005 * 120.01820 * 0.02562 * 13 12 11 41 41 H 1.08003 * 119.96578 * 180.25380 * 14 13 12 42 42 H 1.08003 * 119.94596 * 179.72806 * 15 14 13 43 43 H 1.07995 * 120.03419 * 180.02562 * 18 16 15 44 44 H 0.97000 * 119.99792 * 264.99726 * 19 4 2 45 45 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 7 2.1141 -2.8884 2.3806 8 6 1.8060 -4.1849 2.5819 9 8 1.0449 -4.7517 1.8268 10 6 2.4073 -4.9302 3.7455 11 8 1.9309 -6.2775 3.7455 12 6 2.3808 -7.0910 4.7368 13 6 3.2672 -6.6040 5.6868 14 6 3.7194 -7.4307 6.6968 15 6 3.2985 -8.7465 6.7555 16 6 2.4186 -9.2366 5.8067 17 17 1.8916 -10.8888 5.8837 18 6 1.9590 -8.4109 4.7972 19 7 3.5050 -0.7218 1.2488 20 6 4.1901 0.3528 1.7498 21 1 3.6506 1.2005 2.1454 22 6 5.5783 0.3498 1.7547 23 7 6.2359 -0.6835 1.2730 24 14 6.5130 1.8124 2.4451 25 1 5.5483 2.8366 2.9205 26 1 7.3617 1.3669 3.5792 27 1 7.3717 2.3968 1.3839 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 0.4436 -2.1651 1.3387 36 1 1.8183 -2.6512 0.3177 37 1 2.7232 -2.4351 2.9844 38 1 3.4936 -4.9287 3.6558 39 1 2.1190 -4.4433 4.6770 40 1 3.6000 -5.5776 5.6392 41 1 4.4061 -7.0503 7.4385 42 1 3.6566 -9.3925 7.5435 43 1 1.2720 -8.7932 4.0568 44 1 3.9897 -1.4834 0.8938 45 1 7.2059 -0.6854 1.2761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698977856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:31 Heat of formation + Delta-G solvation = -69.818855 kcal Electronic energy + Delta-G solvation = -26527.492238 eV Core-core repulsion = 22570.545383 eV Total energy + Delta-G solvation = -3956.946856 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.51401 -40.51890 -38.92627 -38.41030 -37.25724 -35.32975 -34.90506 -32.33822 -32.07029 -31.21698 -30.27521 -28.53990 -27.40471 -25.53257 -23.97584 -23.61798 -22.96587 -21.59947 -20.70472 -19.55839 -19.23023 -18.22309 -17.49810 -17.40906 -16.91304 -16.87566 -16.54483 -15.95239 -15.90155 -15.54594 -15.27129 -14.98928 -14.87969 -14.65333 -14.42633 -14.20742 -13.93449 -13.75774 -13.42294 -12.91213 -12.86719 -12.83624 -12.81272 -12.68023 -12.43736 -12.33263 -12.24075 -11.95379 -11.94373 -11.91270 -11.74708 -11.43562 -11.27388 -11.00553 -10.78805 -10.07645 -9.91752 -9.34875 -8.94296 -7.85868 -5.12696 0.06753 0.28410 0.95772 1.48860 1.50534 1.54306 1.60674 1.61089 2.58164 2.60815 2.68490 3.47059 3.57033 3.78208 3.87667 3.94299 3.95697 4.05737 4.08915 4.11161 4.23607 4.31031 4.32996 4.39919 4.47157 4.65450 4.76256 4.78497 4.94031 4.99328 5.08184 5.09993 5.16951 5.22964 5.27662 5.31971 5.32429 5.47805 5.52604 5.63255 5.67226 5.78409 6.19408 6.34377 6.52312 7.15105 7.42867 8.13505 8.38833 9.36981 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013213 B = 0.002258 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.582438 B =12395.896327 C =14167.855035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.135 4.135 4 C 0.173 3.827 5 H 0.062 0.938 6 C 0.123 3.877 7 N -0.702 5.702 8 C 0.511 3.489 9 O -0.575 6.575 10 C 0.044 3.956 11 O -0.313 6.313 12 C 0.126 3.874 13 C -0.207 4.207 14 C -0.061 4.061 15 C -0.149 4.149 16 C -0.005 4.005 17 Cl -0.063 7.063 18 C -0.162 4.162 19 N -0.727 5.727 20 C -0.211 4.211 21 H 0.080 0.920 22 C -0.071 4.071 23 N -0.966 5.966 24 Si 0.956 3.044 25 H -0.267 1.267 26 H -0.298 1.298 27 H -0.306 1.306 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.416 0.584 38 H 0.114 0.886 39 H 0.127 0.873 40 H 0.155 0.845 41 H 0.168 0.832 42 H 0.156 0.844 43 H 0.134 0.866 44 H 0.373 0.627 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.558 -11.093 11.686 18.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.192 4.192 4 C 0.064 3.936 5 H 0.080 0.920 6 C -0.001 4.001 7 N -0.355 5.355 8 C 0.297 3.703 9 O -0.454 6.454 10 C -0.034 4.034 11 O -0.226 6.226 12 C 0.080 3.920 13 C -0.225 4.225 14 C -0.079 4.079 15 C -0.168 4.168 16 C -0.032 4.032 17 Cl -0.034 7.034 18 C -0.182 4.182 19 N -0.367 5.367 20 C -0.343 4.343 21 H 0.098 0.902 22 C -0.263 4.263 23 N -0.618 5.618 24 Si 0.787 3.213 25 H -0.191 1.191 26 H -0.225 1.225 27 H -0.234 1.234 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.253 0.747 38 H 0.132 0.868 39 H 0.144 0.856 40 H 0.173 0.827 41 H 0.186 0.814 42 H 0.174 0.826 43 H 0.151 0.849 44 H 0.205 0.795 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.263 -11.490 11.092 18.462 hybrid contribution 1.351 0.619 -0.032 1.487 sum -7.912 -10.871 11.059 17.409 Atomic orbital electron populations 1.21855 0.94023 1.01842 1.02190 1.21637 0.95865 0.96847 0.98558 1.21731 1.01688 0.95471 1.00304 1.20689 0.83975 0.92034 0.96888 0.92036 1.21659 0.98113 0.92088 0.88277 1.45769 1.48516 1.10207 1.30959 1.20452 0.81316 0.82340 0.86168 1.90700 1.37748 1.68409 1.48583 1.22622 1.00954 0.80989 0.98821 1.86104 1.67119 1.21775 1.47640 1.19009 0.94379 0.90163 0.88457 1.21735 1.00825 1.03034 0.96919 1.21318 0.97498 0.92025 0.97031 1.21306 0.98651 0.97107 0.99688 1.20674 0.99125 0.86149 0.97249 1.98376 1.89602 1.17396 1.98005 1.20276 1.05174 0.91527 1.01195 1.42593 1.00460 1.20149 1.73485 1.19492 0.88692 0.96517 1.29550 0.90188 1.25322 0.97614 0.99729 1.03657 1.69802 1.06339 1.31627 1.54030 0.85327 0.78873 0.80113 0.76982 1.19103 1.22510 1.23396 0.92063 0.92248 0.92390 0.93264 0.93158 0.93216 0.93315 0.89905 0.93315 0.74735 0.86809 0.85558 0.82698 0.81442 0.82614 0.84852 0.79530 0.94478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.84 71.98 0.64 -2.77 16 2 C -0.11 -3.33 2.69 -10.80 -0.03 -3.36 16 3 C -0.13 -4.41 8.26 71.98 0.59 -3.81 16 4 C 0.17 5.73 2.18 44.99 0.10 5.83 16 5 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 6 C 0.12 3.80 4.73 86.38 0.41 4.21 16 7 N -0.70 -20.61 5.39 -463.05 -2.49 -23.11 16 8 C 0.51 15.72 7.91 87.66 0.69 16.41 16 9 O -0.57 -22.58 16.50 16.01 0.26 -22.32 16 10 C 0.04 1.01 5.22 71.24 0.37 1.38 16 11 O -0.31 -8.72 9.67 -73.39 -0.71 -9.43 16 12 C 0.13 2.92 6.69 22.50 0.15 3.07 16 13 C -0.21 -3.61 9.04 22.37 0.20 -3.40 16 14 C -0.06 -0.85 10.04 22.25 0.22 -0.62 16 15 C -0.15 -2.27 9.83 22.31 0.22 -2.06 16 16 C -0.01 -0.10 6.32 22.31 0.14 0.04 16 17 Cl -0.06 -1.13 28.95 -2.72 -0.08 -1.21 16 18 C -0.16 -3.72 9.77 22.39 0.22 -3.50 16 19 N -0.73 -30.79 4.44 -322.93 -1.43 -32.23 16 20 C -0.21 -9.96 7.57 84.04 0.64 -9.33 16 21 H 0.08 3.66 7.40 -2.91 -0.02 3.63 16 22 C -0.07 -3.66 5.50 84.86 0.47 -3.20 16 23 N -0.97 -54.29 13.06 21.65 0.28 -54.01 16 24 Si 0.96 42.63 29.55 68.60 2.03 44.66 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 27 H -0.31 -14.21 7.11 99.48 0.71 -13.50 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.33 6.55 -2.39 -0.02 1.32 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 2.02 6.01 -2.39 -0.01 2.00 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.08 2.36 6.71 -2.38 -0.02 2.34 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 37 H 0.42 11.67 8.14 -92.71 -0.75 10.92 16 38 H 0.11 2.25 7.65 -2.39 -0.02 2.23 16 39 H 0.13 2.03 7.67 -2.39 -0.02 2.01 16 40 H 0.16 2.07 6.30 -2.91 -0.02 2.05 16 41 H 0.17 1.27 8.06 -2.91 -0.02 1.24 16 42 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 43 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 44 H 0.37 17.77 7.80 -92.71 -0.72 17.04 16 45 H 0.25 13.73 8.31 -92.70 -0.77 12.96 16 Total: -1.00 -64.49 387.09 2.43 -62.06 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: -0.46 Total: 36.68 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 5.03 Total: -1.10 kcal Atomic # 7 Polarization: -105.69 SS G_CDS: -3.65 Total: -109.34 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.45 Total: -31.75 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal Total: -64.49 2.43 -62.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698977856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.762 kcal (2) G-P(sol) polarization free energy of solvation -64.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds