Wall clock time and date at job start Sat Apr 11 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35672 * 117.00294 * 2 1 4 4 C 1.38698 * 120.13455 * 0.02935 * 3 2 1 5 5 C 1.38060 * 120.09988 * 179.97438 * 4 3 2 6 6 C 1.38642 * 120.37416 * 0.02562 * 5 4 3 7 7 Cl 1.73593 * 119.86215 * 179.97438 * 6 5 4 8 8 C 1.37895 * 120.27466 * 359.72452 * 6 5 4 9 9 C 1.39716 * 119.89143 * 0.52783 * 8 6 5 10 10 C 1.47543 * 120.18071 * 179.74315 * 9 8 6 11 11 O 1.21597 * 119.99434 * 179.72565 * 10 9 8 12 12 N 1.34769 * 120.00321 * 359.73025 * 10 9 8 13 13 C 1.46502 * 119.99943 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.46925 * 180.02562 * 13 12 10 15 15 H 1.09008 * 109.47064 * 295.00202 * 14 13 12 16 16 N 1.46493 * 109.47375 * 54.99871 * 14 13 12 17 17 C 1.36936 * 120.00314 * 204.99797 * 16 14 13 18 18 H 1.08001 * 120.00159 * 0.02562 * 17 16 14 19 19 C 1.38811 * 119.99842 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99540 * 179.72505 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 C 1.52999 * 109.47083 * 175.00128 * 14 13 12 26 26 C 1.52997 * 109.47278 * 179.97438 * 25 14 13 27 27 C 1.52999 * 109.47156 * 299.99894 * 25 14 13 28 28 H 1.09001 * 109.46831 * 300.00024 * 1 2 3 29 29 H 1.08998 * 109.46590 * 59.99553 * 1 2 3 30 30 H 1.08996 * 109.46955 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.95420 * 359.96510 * 4 3 2 32 32 H 1.07992 * 119.81511 * 180.02562 * 5 4 3 33 33 H 1.08002 * 120.05793 * 180.27604 * 8 6 5 34 34 H 0.97003 * 119.99812 * 359.97438 * 12 10 9 35 35 H 1.08997 * 109.46993 * 60.00477 * 13 12 10 36 36 H 1.08999 * 109.47017 * 299.99897 * 13 12 10 37 37 H 0.97000 * 120.00040 * 24.99929 * 16 14 13 38 38 H 0.96999 * 119.99889 * 180.27497 * 20 19 17 39 39 H 1.09003 * 109.47054 * 59.99725 * 25 14 13 40 40 H 1.09003 * 109.47146 * 59.99973 * 26 25 14 41 41 H 1.08996 * 109.47253 * 180.02562 * 26 25 14 42 42 H 1.09008 * 109.47122 * 300.00229 * 26 25 14 43 43 H 1.09003 * 109.46926 * 60.00284 * 27 25 14 44 44 H 1.08998 * 109.47115 * 179.97438 * 27 25 14 45 45 H 1.08994 * 109.47213 * 300.00018 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 1.2925 2.3738 0.0006 5 6 1.9200 3.6036 0.0011 6 6 3.3041 3.6843 0.0005 7 17 4.0794 5.2375 0.0005 8 6 4.0674 2.5359 0.0051 9 6 3.4441 1.2855 -0.0008 10 6 4.2547 0.0526 -0.0016 11 8 3.7087 -1.0339 -0.0017 12 7 5.6001 0.1307 -0.0022 13 6 6.4049 -1.0935 -0.0025 14 6 7.8904 -0.7273 -0.0026 15 1 8.1391 -0.2183 -0.9339 16 7 8.1750 0.1586 1.1289 17 6 9.2428 1.0144 1.0769 18 1 9.8749 1.0366 0.2015 19 6 9.5127 1.8534 2.1493 20 7 10.5422 2.6721 2.1014 21 14 8.4198 1.8146 3.6638 22 1 7.3159 2.7948 3.5027 23 1 7.8521 0.4525 3.8298 24 1 9.2226 2.1657 4.8627 25 6 8.7296 -2.0004 0.1228 26 6 10.2151 -1.6343 0.1221 27 6 8.3805 -2.7147 1.4300 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2139 2.3191 0.0005 32 1 1.3295 4.5077 0.0020 33 1 5.1454 2.6028 0.0091 34 1 6.0356 0.9974 -0.0025 35 1 6.1747 -1.6794 -0.8924 36 1 6.1755 -1.6793 0.8876 37 1 7.6071 0.1390 1.9151 38 1 10.7332 3.2555 2.8524 39 1 8.5178 -2.6596 -0.7191 40 1 10.4272 -0.9750 0.9639 41 1 10.8129 -2.5413 0.2110 42 1 10.4635 -1.1256 -0.8094 43 1 7.3221 -2.9756 1.4300 44 1 8.9780 -3.6219 1.5191 45 1 8.5922 -2.0556 2.2719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698978077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:33 Heat of formation + Delta-G solvation = -62.241467 kcal Electronic energy + Delta-G solvation = -27882.866560 eV Core-core repulsion = 23926.248285 eV Total energy + Delta-G solvation = -3956.618276 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.72652 -40.25345 -38.88246 -38.68853 -37.16864 -35.34217 -34.75133 -32.84475 -32.38276 -31.04768 -29.68523 -28.14418 -27.81582 -25.80220 -24.80259 -23.60303 -22.99867 -21.57282 -20.50541 -19.93404 -19.24438 -18.27920 -17.74927 -17.01496 -16.77604 -16.64797 -16.56630 -16.09207 -15.88100 -15.75398 -15.28441 -14.87733 -14.84696 -14.61660 -14.44769 -14.38043 -14.11366 -13.57435 -13.46951 -13.04825 -12.98527 -12.92749 -12.78893 -12.73975 -12.44490 -12.32299 -12.19941 -12.03027 -11.97758 -11.81655 -11.69141 -11.40210 -11.25820 -10.97823 -10.81957 -10.36461 -10.00162 -9.26225 -9.24824 -7.93428 -5.24101 -0.36004 0.05621 1.09400 1.39001 1.40832 1.46249 1.74203 2.16355 2.24743 2.52388 2.60853 3.38094 3.49494 3.57773 3.63640 3.84729 3.89441 4.03935 4.23967 4.27346 4.30005 4.32775 4.40429 4.40704 4.54879 4.59552 4.66133 4.73111 4.77150 4.95099 4.95639 4.99051 5.03229 5.11983 5.21578 5.26079 5.30671 5.34323 5.51059 5.58438 5.81786 5.90624 6.27691 6.29316 6.53593 7.15341 7.19684 7.90377 8.09012 9.27800 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009772 B = 0.004209 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.538309 B = 6650.239812 C = 8624.897167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.308 6.308 3 C 0.180 3.820 4 C -0.196 4.196 5 C -0.032 4.032 6 C -0.092 4.092 7 Cl -0.067 7.067 8 C -0.044 4.044 9 C -0.184 4.184 10 C 0.556 3.444 11 O -0.558 6.558 12 N -0.715 5.715 13 C 0.119 3.881 14 C 0.173 3.827 15 H 0.060 0.940 16 N -0.741 5.741 17 C -0.199 4.199 18 H 0.070 0.930 19 C -0.053 4.053 20 N -0.981 5.981 21 Si 0.929 3.071 22 H -0.281 1.281 23 H -0.261 1.261 24 H -0.306 1.306 25 C -0.102 4.102 26 C -0.135 4.135 27 C -0.139 4.139 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.181 0.819 32 H 0.173 0.827 33 H 0.138 0.862 34 H 0.407 0.593 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.362 0.638 38 H 0.253 0.747 39 H 0.084 0.916 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.038 0.962 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.436 -2.153 -6.138 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.219 6.219 3 C 0.131 3.869 4 C -0.215 4.215 5 C -0.050 4.050 6 C -0.119 4.119 7 Cl -0.038 7.038 8 C -0.063 4.063 9 C -0.189 4.189 10 C 0.344 3.656 11 O -0.438 6.438 12 N -0.367 5.367 13 C -0.005 4.005 14 C 0.064 3.936 15 H 0.078 0.922 16 N -0.385 5.385 17 C -0.330 4.330 18 H 0.088 0.912 19 C -0.244 4.244 20 N -0.633 5.633 21 Si 0.759 3.241 22 H -0.207 1.207 23 H -0.187 1.187 24 H -0.234 1.234 25 C -0.124 4.124 26 C -0.193 4.193 27 C -0.196 4.196 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.130 0.870 31 H 0.198 0.802 32 H 0.190 0.810 33 H 0.156 0.844 34 H 0.244 0.756 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.195 0.805 38 H 0.062 0.938 39 H 0.102 0.898 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -22.484 -2.918 -6.231 23.513 hybrid contribution 0.308 0.992 1.277 1.646 sum -22.176 -1.926 -4.954 22.804 Atomic orbital electron populations 1.23538 0.76071 1.05841 1.03114 1.86370 1.23622 1.25655 1.86256 1.19291 0.90588 0.86120 0.90902 1.21531 1.02166 0.89778 1.08019 1.21378 0.91471 0.99548 0.92617 1.20776 0.93866 0.86514 1.10740 1.98392 1.81372 1.26818 1.97212 1.21149 1.00658 0.89809 0.94693 1.19269 0.91856 0.93000 1.14729 1.18172 0.82253 0.88699 0.76499 1.90765 1.72236 1.29569 1.51263 1.45968 1.05477 1.11097 1.74194 1.21727 0.89948 0.86349 1.02522 1.20680 0.90950 0.90938 0.90985 0.92244 1.42774 1.33081 1.45058 1.17537 1.18941 1.02978 1.10071 1.00964 0.91171 1.25158 0.99270 0.99472 1.00541 1.69836 1.31701 1.29077 1.32644 0.85805 0.78959 0.78311 0.81055 1.20708 1.18669 1.23353 1.21544 0.95666 0.96743 0.98411 1.21738 0.95693 1.00324 1.01516 1.21766 1.00995 0.99515 0.97343 0.90637 0.90377 0.87012 0.80168 0.80974 0.84387 0.75590 0.89956 0.91624 0.80532 0.93813 0.89824 0.93185 0.92970 0.94239 0.92332 0.92217 0.94510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.22 16 2 O -0.31 -7.70 8.57 -68.96 -0.59 -8.29 16 3 C 0.18 4.35 6.70 22.84 0.15 4.51 16 4 C -0.20 -3.15 9.03 22.34 0.20 -2.95 16 5 C -0.03 -0.52 9.81 22.32 0.22 -0.30 16 6 C -0.09 -2.08 6.31 22.28 0.14 -1.94 16 7 Cl -0.07 -1.57 28.94 -2.72 -0.08 -1.65 16 8 C -0.04 -1.16 9.31 22.55 0.21 -0.95 16 9 C -0.18 -5.29 5.89 -20.01 -0.12 -5.41 16 10 C 0.56 18.64 7.76 86.70 0.67 19.31 16 11 O -0.56 -21.53 15.16 16.91 0.26 -21.27 16 12 N -0.72 -22.92 5.34 -466.26 -2.49 -25.41 16 13 C 0.12 3.68 5.02 86.38 0.43 4.11 16 14 C 0.17 5.87 2.35 44.99 0.11 5.97 16 15 H 0.06 2.09 8.08 -2.38 -0.02 2.07 16 16 N -0.74 -30.90 3.48 -322.94 -1.12 -32.02 16 17 C -0.20 -10.16 8.05 84.03 0.68 -9.49 16 18 H 0.07 3.93 7.63 -2.91 -0.02 3.91 16 19 C -0.05 -2.95 5.50 84.86 0.47 -2.49 16 20 N -0.98 -60.47 13.97 21.65 0.30 -60.17 16 21 Si 0.93 44.61 27.74 68.60 1.90 46.51 16 22 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.26 -11.69 6.51 99.48 0.65 -11.05 16 24 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 25 C -0.10 -3.17 2.80 -10.80 -0.03 -3.20 16 26 C -0.14 -4.75 8.26 71.98 0.59 -4.15 16 27 C -0.14 -4.19 8.69 71.98 0.63 -3.56 16 28 H 0.08 0.66 7.66 -2.39 -0.02 0.64 16 29 H 0.08 0.64 7.66 -2.39 -0.02 0.62 16 30 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.18 1.45 6.30 -2.91 -0.02 1.43 16 32 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.14 3.83 6.40 -2.91 -0.02 3.81 16 34 H 0.41 13.07 6.17 -92.71 -0.57 12.50 16 35 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.07 2.12 6.17 -2.39 -0.01 2.10 16 37 H 0.36 15.37 5.65 -92.71 -0.52 14.85 16 38 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.05 2.16 6.01 -2.39 -0.01 2.15 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 43 H 0.06 1.62 6.32 -2.39 -0.02 1.60 16 44 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.04 1.29 7.60 -2.39 -0.02 1.28 16 Total: -1.00 -70.16 376.09 3.52 -66.64 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: -0.12 Total: 34.97 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 5.46 Total: 0.69 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -3.31 Total: -117.60 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.33 Total: -29.57 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.90 Total: 46.51 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal Total: -70.16 3.52 -66.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698978077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.395 kcal (2) G-P(sol) polarization free energy of solvation -70.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds