Wall clock time and date at job start Sat Apr 11 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.53005 * 109.46991 * 184.99870 * 3 2 1 6 6 N 1.46504 * 109.47016 * 184.99757 * 5 3 2 7 7 C 1.34772 * 120.00116 * 179.97438 * 6 5 3 8 8 O 1.21695 * 119.99696 * 0.02562 * 7 6 5 9 9 C 1.46654 * 120.00214 * 179.97438 * 7 6 5 10 10 C 1.36545 * 125.98967 * 179.71554 * 9 7 6 11 11 C 1.40365 * 106.70471 * 179.91371 * 10 9 7 12 12 C 1.50700 * 126.43765 * 180.11158 * 11 10 9 13 13 C 1.35131 * 107.11796 * 0.35101 * 11 10 9 14 14 O 1.33934 * 108.76647 * 359.78168 * 13 11 10 15 15 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 16 16 C 1.34777 * 120.00429 * 275.00047 * 15 3 2 17 17 O 1.21283 * 119.99304 * 0.02562 * 16 15 3 18 18 C 1.50695 * 120.00578 * 180.02562 * 16 15 3 19 19 S 1.81002 * 109.47485 * 179.97438 * 18 16 15 20 20 C 1.76193 * 100.00008 * 180.02562 * 19 18 16 21 21 H 1.07995 * 120.00280 * 0.02562 * 20 19 18 22 22 C 1.38806 * 119.99890 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99966 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00214 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46928 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47165 * 119.99704 * 24 22 20 27 27 H 1.48497 * 109.47410 * 240.00124 * 24 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 1.08996 * 109.46875 * 304.99826 * 5 3 2 34 34 H 1.09002 * 109.47117 * 65.00082 * 5 3 2 35 35 H 0.97001 * 119.99463 * 0.02562 * 6 5 3 36 36 H 1.07997 * 126.64472 * 0.03723 * 10 9 7 37 37 H 1.08998 * 109.47765 * 270.25976 * 12 11 10 38 38 H 1.09002 * 109.47072 * 30.26119 * 12 11 10 39 39 H 1.09006 * 109.47039 * 150.25372 * 12 11 10 40 40 H 1.08001 * 125.61533 * 179.78053 * 13 11 10 41 41 H 0.97001 * 120.00176 * 95.00254 * 15 3 2 42 42 H 1.08995 * 109.47428 * 300.00429 * 18 16 15 43 43 H 1.09008 * 109.47339 * 60.00017 * 18 16 15 44 44 H 0.96995 * 119.99953 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4444 -0.1257 6 7 4.0631 2.8169 -0.0060 7 6 5.3857 3.0630 -0.0858 8 8 6.1661 2.1452 -0.2578 9 6 5.8845 4.4370 0.0335 10 6 7.1929 4.8234 -0.0233 11 6 7.2087 6.2182 0.1336 12 6 8.4275 7.1046 0.1381 13 6 5.9263 6.6160 0.2853 14 8 5.1312 5.5399 0.2244 15 7 1.6524 2.0975 1.2517 16 6 0.4351 2.6644 1.3669 17 8 -0.3396 2.6319 0.4343 18 6 0.0366 3.3387 2.6543 19 16 -1.6419 3.9974 2.4961 20 6 -1.8431 4.7096 4.0951 21 1 -1.0427 4.6493 4.8176 22 6 -3.0303 5.3481 4.4260 23 7 -4.0056 5.4220 3.5451 24 14 -3.2439 6.1026 6.1214 25 1 -2.0099 5.8858 6.9187 26 1 -3.4958 7.5599 5.9866 27 1 -4.3954 5.4625 6.8066 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.9954 0.8312 0.6660 34 1 3.8499 1.0377 -1.0960 35 1 3.4410 3.5483 0.1315 36 1 8.0493 4.1807 -0.1639 37 1 8.8044 7.1992 1.1564 38 1 9.1984 6.6656 -0.4953 39 1 8.1613 8.0902 -0.2439 40 1 5.5967 7.6341 0.4316 41 1 2.2719 2.1232 1.9977 42 1 0.0680 2.6148 3.4685 43 1 0.7280 4.1543 2.8665 44 1 -4.8350 5.8686 3.7763 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704673579.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:41 Heat of formation + Delta-G solvation = -95.598641 kcal Electronic energy + Delta-G solvation = -26494.871857 eV Core-core repulsion = 22538.850812 eV Total energy + Delta-G solvation = -3956.021045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.72283 -41.21067 -40.38182 -37.63181 -35.43140 -34.87298 -34.57950 -33.60940 -31.78757 -30.74030 -29.45461 -28.06240 -27.64160 -25.32383 -23.41015 -22.58621 -22.15905 -21.58925 -20.91453 -19.84085 -19.06346 -17.97112 -17.59628 -17.43576 -17.37280 -16.91501 -16.87403 -16.55553 -16.14895 -15.76845 -15.29043 -14.91222 -14.65240 -14.60162 -14.39817 -14.28414 -14.09781 -13.97304 -13.87499 -13.52807 -13.50364 -13.15329 -13.02020 -12.90297 -12.62448 -12.57845 -12.49415 -12.18063 -11.77350 -11.68693 -11.53383 -11.15514 -10.86022 -10.75958 -10.35617 -10.25389 -10.07109 -9.57813 -8.64102 -8.34726 -6.11261 -0.02598 1.27747 1.30882 1.40770 1.47218 1.57681 1.62041 1.67079 2.02621 2.09463 2.26279 2.32319 2.99630 3.33004 3.48892 3.62164 3.80282 3.96866 3.99466 4.03853 4.12580 4.32137 4.33027 4.39357 4.51403 4.54590 4.59287 4.65179 4.82664 4.87116 4.90925 4.91600 5.02367 5.06280 5.07281 5.15341 5.21304 5.42572 5.48549 5.49035 5.53975 5.80087 6.20222 6.28070 6.49463 6.87259 7.07294 7.27900 8.74462 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009175 B = 0.002796 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.950647 B =10012.587750 C =12604.405511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.140 3.860 4 H 0.081 0.919 5 C 0.119 3.881 6 N -0.711 5.711 7 C 0.606 3.394 8 O -0.553 6.553 9 C -0.108 4.108 10 C -0.120 4.120 11 C -0.206 4.206 12 C -0.082 4.082 13 C 0.001 3.999 14 O -0.172 6.172 15 N -0.713 5.713 16 C 0.539 3.461 17 O -0.546 6.546 18 C -0.133 4.133 19 S -0.143 6.143 20 C -0.545 4.545 21 H 0.080 0.920 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.996 3.004 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.275 1.275 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.032 0.968 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.412 0.588 36 H 0.162 0.838 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.244 0.756 41 H 0.413 0.587 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.750 -2.275 -6.013 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C 0.035 3.965 4 H 0.099 0.901 5 C -0.004 4.004 6 N -0.362 5.362 7 C 0.393 3.607 8 O -0.434 6.434 9 C -0.159 4.159 10 C -0.141 4.141 11 C -0.207 4.207 12 C -0.139 4.139 13 C -0.069 4.069 14 O -0.067 6.067 15 N -0.368 5.368 16 C 0.325 3.675 17 O -0.423 6.423 18 C -0.284 4.284 19 S 0.084 5.916 20 C -0.693 4.693 21 H 0.098 0.902 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.818 3.182 25 H -0.181 1.181 26 H -0.199 1.199 27 H -0.200 1.200 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.248 0.752 36 H 0.180 0.820 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.260 0.740 41 H 0.249 0.751 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 23.511 -2.986 -7.719 24.925 hybrid contribution 0.282 0.881 2.229 2.413 sum 23.793 -2.105 -5.490 24.508 Atomic orbital electron populations 1.21741 0.96407 1.00691 1.01330 1.21854 0.95372 0.94548 1.04354 1.21298 0.93007 0.94931 0.87263 0.90078 1.21793 0.91493 0.82418 1.04680 1.45884 1.06645 1.11185 1.72484 1.16602 0.82600 0.84989 0.76504 1.90860 1.56856 1.43863 1.51796 1.21928 0.91179 0.86885 1.15934 1.22097 0.96034 0.95960 1.00031 1.20862 0.97283 0.93956 1.08600 1.20263 0.92612 0.97895 1.03120 1.25065 0.88760 0.91912 1.01122 1.84087 1.37877 1.15048 1.69703 1.45848 1.15794 1.57882 1.17240 1.19846 0.81843 0.77567 0.88230 1.90722 1.51795 1.58843 1.40949 1.23391 1.02289 1.03629 0.99074 1.85512 1.12888 1.71864 1.21349 1.23228 1.04397 1.41935 0.99757 0.90168 1.26089 0.94396 0.95962 1.02654 1.70178 1.05708 1.42170 1.36666 0.84942 0.78698 0.77773 0.76774 1.18140 1.19904 1.20040 0.92326 0.93945 0.94875 0.90030 0.88482 0.89086 0.88482 0.75232 0.82029 0.90494 0.90953 0.89748 0.73993 0.75082 0.87787 0.87549 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 8.51 71.98 0.61 -3.12 16 2 C -0.12 -2.17 5.61 30.60 0.17 -2.00 16 3 C 0.14 2.65 2.42 45.00 0.11 2.76 16 4 H 0.08 1.89 7.58 -2.39 -0.02 1.87 16 5 C 0.12 1.87 5.23 86.38 0.45 2.32 16 6 N -0.71 -13.23 5.38 -467.10 -2.51 -15.75 16 7 C 0.61 13.75 7.79 86.44 0.67 14.42 16 8 O -0.55 -15.25 16.86 -4.33 -0.07 -15.32 16 9 C -0.11 -2.31 7.13 24.07 0.17 -2.14 16 10 C -0.12 -2.30 10.57 22.39 0.24 -2.06 16 11 C -0.21 -3.05 6.14 -20.06 -0.12 -3.17 16 12 C -0.08 -0.72 10.39 71.24 0.74 0.02 16 13 C 0.00 0.01 12.00 67.10 0.81 0.82 16 14 O -0.17 -3.40 10.40 -5.09 -0.05 -3.45 16 15 N -0.71 -15.66 4.47 -442.54 -1.98 -17.64 16 16 C 0.54 17.92 6.42 87.66 0.56 18.48 16 17 O -0.55 -22.62 13.00 -3.04 -0.04 -22.66 16 18 C -0.13 -4.98 6.16 71.23 0.44 -4.55 16 19 S -0.14 -7.70 20.57 -56.49 -1.16 -8.86 16 20 C -0.55 -30.60 9.50 67.96 0.65 -29.96 16 21 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 22 C 0.01 0.77 5.49 84.86 0.47 1.24 16 23 N -0.91 -55.25 13.22 21.65 0.29 -54.96 16 24 Si 1.00 43.12 29.55 68.60 2.03 45.15 16 25 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.04 1.24 7.85 -2.39 -0.02 1.22 16 30 H 0.03 1.06 5.64 -2.38 -0.01 1.04 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.41 7.69 7.89 -92.71 -0.73 6.96 16 36 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 37 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 40 H 0.24 1.47 8.06 -2.91 -0.02 1.44 16 41 H 0.41 6.99 8.60 -92.71 -0.80 6.19 16 42 H 0.10 3.60 8.14 -2.40 -0.02 3.58 16 43 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 44 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -78.39 389.35 1.96 -76.43 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -0.49 Total: 23.99 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 5.96 Total: -6.93 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -4.21 Total: -88.34 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -0.17 Total: -41.43 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -7.70 SS G_CDS: -1.16 Total: -8.86 kcal Total: -78.39 1.96 -76.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704673579.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.171 kcal (2) G-P(sol) polarization free energy of solvation -78.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds