Wall clock time and date at job start Sat Apr 11 2020 05:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52991 * 109.47412 * 331.48565 * 3 2 1 5 5 C 1.53000 * 109.47110 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.47131 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99736 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00006 * 179.97438 * 6 5 4 9 9 C 1.47026 * 125.65092 * 359.97438 * 8 6 5 10 10 C 1.54321 * 107.27395 * 178.99355 * 9 8 6 11 11 H 1.08994 * 110.71935 * 96.16904 * 10 9 8 12 12 O 1.42896 * 110.87163 * 219.37297 * 10 9 8 13 13 C 1.55156 * 102.94252 * 337.80751 * 10 9 8 14 14 H 1.09005 * 111.00506 * 277.39412 * 13 10 9 15 15 N 1.46499 * 111.00695 * 153.57519 * 13 10 9 16 16 C 1.34778 * 120.00278 * 158.17620 * 15 13 10 17 17 O 1.21278 * 119.99748 * 0.02562 * 16 15 13 18 18 C 1.50697 * 120.00209 * 180.02562 * 16 15 13 19 19 S 1.80999 * 109.47181 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99825 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00405 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99855 * 179.72221 * 20 19 18 23 23 N 1.31634 * 119.99756 * 0.27728 * 22 20 19 24 24 Si 1.86803 * 120.00005 * 180.27923 * 22 20 19 25 25 H 1.48498 * 109.47174 * 90.00123 * 24 22 20 26 26 H 1.48501 * 109.47062 * 210.00074 * 24 22 20 27 27 H 1.48504 * 109.46913 * 329.99873 * 24 22 20 28 28 C 1.47466 * 125.63156 * 180.02562 * 8 6 5 29 29 H 4.44645 * 5.63251 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.46346 * 211.48780 * 3 2 1 31 31 H 1.08998 * 109.47069 * 91.49327 * 3 2 1 32 32 H 1.09004 * 109.47190 * 60.00732 * 4 3 2 33 33 H 1.08998 * 109.47625 * 300.00421 * 4 3 2 34 34 H 1.09001 * 109.46844 * 60.00705 * 5 4 3 35 35 H 1.08996 * 109.47530 * 300.00238 * 5 4 3 36 36 H 1.09000 * 109.88220 * 59.57591 * 9 8 6 37 37 H 1.09002 * 110.00740 * 298.48728 * 9 8 6 38 38 H 0.96699 * 114.00086 * 293.60583 * 12 10 9 39 39 H 0.97000 * 119.99972 * 338.17976 * 15 13 10 40 40 H 1.08999 * 109.47278 * 59.99800 * 18 16 15 41 41 H 1.09002 * 109.46837 * 300.00183 * 18 16 15 42 42 H 0.97000 * 119.99219 * 179.97438 * 23 22 20 43 43 H 1.08999 * 110.35096 * 85.23368 * 28 8 6 44 44 H 1.09008 * 110.40506 * 322.89834 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.2665 0.6886 5 6 4.6866 -1.2655 0.6891 6 6 5.1896 -2.5140 1.3668 7 8 4.4019 -3.3250 1.8057 8 7 6.5147 -2.7298 1.4842 9 6 7.5751 -1.8348 0.9982 10 6 8.9262 -2.4772 1.3768 11 1 9.3292 -3.0487 0.5408 12 8 9.8601 -1.4838 1.8046 13 6 8.5472 -3.4166 2.5520 14 1 8.4993 -2.8668 3.4920 15 7 9.4837 -4.5388 2.6503 16 6 9.6158 -5.2065 3.8137 17 8 8.9590 -4.8785 4.7790 18 6 10.5797 -6.3604 3.9150 19 16 10.5279 -7.0445 5.5899 20 6 11.7133 -8.3381 5.4288 21 1 12.2151 -8.4965 4.4856 22 6 12.0070 -9.1497 6.5159 23 7 11.3959 -8.9564 7.6656 24 14 13.2694 -10.5162 6.3473 25 1 14.6155 -9.9918 6.6913 26 1 12.9213 -11.6281 7.2680 27 1 13.2751 -11.0151 4.9485 28 6 7.1409 -3.9035 2.1207 29 1 -1.0498 -0.0002 0.0003 30 1 3.0088 0.8772 0.5368 31 1 3.0093 0.0276 -1.0273 32 1 2.7938 -2.1431 0.1518 33 1 2.7933 -1.2935 1.7159 34 1 5.0491 -0.3890 1.2262 35 1 5.0503 -1.2384 -0.3380 36 1 7.4827 -0.8583 1.4735 37 1 7.5058 -1.7280 -0.0844 38 1 10.1295 -0.8708 1.1070 39 1 10.0089 -4.8014 1.8782 40 1 11.5887 -6.0114 3.6957 41 1 10.2986 -7.1325 3.1987 42 1 11.6009 -9.5238 8.4251 43 1 7.2253 -4.7222 1.4062 44 1 6.5644 -4.2165 2.9913 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001719078783.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:59 Heat of formation + Delta-G solvation = -70.796245 kcal Electronic energy + Delta-G solvation = -25846.691354 eV Core-core repulsion = 21891.745822 eV Total energy + Delta-G solvation = -3954.945532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.73442 -39.33960 -38.20450 -36.15829 -35.77373 -34.24603 -32.70758 -32.42919 -30.76091 -29.14877 -28.83320 -27.50855 -25.48756 -24.16251 -22.48539 -21.51497 -20.55095 -19.72063 -18.58635 -18.04724 -17.79554 -17.40001 -16.76967 -16.41476 -16.12752 -15.73175 -15.20352 -15.00539 -14.80468 -14.62454 -14.31915 -14.20505 -13.92680 -13.66948 -13.39896 -13.15976 -13.03688 -12.87589 -12.63145 -12.58325 -12.43395 -11.98023 -11.83882 -11.43316 -11.10057 -11.06223 -11.02660 -10.88392 -10.75635 -10.60452 -10.47418 -10.12976 -9.82517 -9.49997 -9.22436 -9.06661 -8.93922 -8.24490 -6.50526 -6.21732 -3.92570 2.30363 2.34212 2.48264 2.52896 2.94588 3.00546 3.22466 3.26593 3.30654 3.56119 3.65073 3.87242 3.99467 4.14633 4.19980 4.36133 4.43338 4.55000 4.61280 4.79716 4.91024 4.95916 4.99863 5.04394 5.10984 5.13317 5.13820 5.15520 5.28021 5.56984 5.63702 5.66367 5.68400 5.75331 5.83543 5.86439 5.88826 6.10963 6.45930 7.06646 7.13843 7.26269 7.56157 7.59657 7.83076 8.34900 8.51336 9.23532 10.85689 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022227 B = 0.001775 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.440514 B =15770.795633 C =16645.134234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.188 4.188 3 C -0.012 4.012 4 C -0.102 4.102 5 C -0.135 4.135 6 C 0.528 3.472 7 O -0.530 6.530 8 N -0.617 5.617 9 C 0.073 3.927 10 C 0.086 3.914 11 H 0.082 0.918 12 O -0.545 6.545 13 C 0.146 3.854 14 H 0.114 0.886 15 N -0.727 5.727 16 C 0.535 3.465 17 O -0.510 6.510 18 C -0.153 4.153 19 S -0.058 6.058 20 C -0.537 4.537 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.095 3.905 29 H 0.216 0.784 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.382 0.618 39 H 0.401 0.599 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.269 0.731 43 H 0.076 0.924 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.232 20.675 -22.202 32.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.188 4.188 3 C -0.049 4.049 4 C -0.140 4.140 5 C -0.175 4.175 6 C 0.317 3.683 7 O -0.406 6.406 8 N -0.354 5.354 9 C -0.052 4.052 10 C 0.026 3.974 11 H 0.100 0.900 12 O -0.350 6.350 13 C 0.039 3.961 14 H 0.132 0.868 15 N -0.381 5.381 16 C 0.322 3.678 17 O -0.383 6.383 18 C -0.304 4.304 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.029 4.029 29 H 0.233 0.767 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.229 0.771 39 H 0.235 0.765 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.919 20.416 -19.570 30.690 hybrid contribution 1.777 -1.040 -2.221 3.029 sum -10.142 19.376 -21.792 30.873 Atomic orbital electron populations 1.24941 0.96049 1.00635 1.00961 1.23066 0.94567 1.00635 1.00529 1.18743 0.84977 0.99111 1.02049 1.21310 0.92708 0.97384 1.02576 1.21664 0.97478 0.96287 1.02055 1.20406 0.80147 0.88208 0.79558 1.90765 1.53993 1.47263 1.48545 1.48301 1.04998 1.22989 1.59098 1.22763 0.87415 0.95074 0.99926 1.23045 0.87890 0.89681 0.96824 0.90029 1.86682 1.62326 1.45434 1.40565 1.21904 0.87630 0.87006 0.99590 0.86773 1.45813 1.44101 1.33793 1.14426 1.20388 0.82676 0.82921 0.81845 1.90726 1.45185 1.66085 1.36348 1.23528 1.00362 0.98049 1.08418 1.85443 1.55725 1.38539 1.03471 1.22865 1.26992 1.18230 1.00387 0.90900 1.24994 0.96585 0.97515 0.94459 1.70021 1.40462 1.38392 1.01348 0.86164 0.80647 0.80470 0.78186 1.20268 1.20746 1.19705 1.22712 0.92955 0.88254 0.98987 0.76672 0.89421 0.89497 0.90601 0.90505 0.88502 0.88653 0.89839 0.90498 0.77064 0.76480 0.89035 0.89060 0.92159 0.90607 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.57 19.25 29.55 0.57 -1.00 16 2 C -0.19 -1.52 13.34 -37.12 -0.50 -2.02 16 3 C -0.01 -0.07 5.70 -29.52 -0.17 -0.24 16 4 C -0.10 -0.73 4.46 -26.74 -0.12 -0.85 16 5 C -0.13 -0.78 4.89 -27.88 -0.14 -0.92 16 6 C 0.53 5.53 7.85 -10.99 -0.09 5.45 16 7 O -0.53 -8.06 16.24 5.56 0.09 -7.97 16 8 N -0.62 -5.75 3.33 -170.47 -0.57 -6.31 16 9 C 0.07 0.39 6.27 -3.06 -0.02 0.37 16 10 C 0.09 0.58 3.96 -24.90 -0.10 0.48 16 11 H 0.08 0.38 8.00 -51.93 -0.42 -0.03 16 12 O -0.55 -3.89 13.40 -35.23 -0.47 -4.36 16 13 C 0.15 1.65 3.09 -65.77 -0.20 1.44 16 14 H 0.11 1.64 7.64 -51.93 -0.40 1.24 16 15 N -0.73 -9.11 5.21 -51.72 -0.27 -9.38 16 16 C 0.54 9.73 7.85 -10.99 -0.09 9.64 16 17 O -0.51 -11.49 15.55 5.56 0.09 -11.40 16 18 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 19 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 20 C -0.54 -15.23 9.50 30.94 0.29 -14.93 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 24 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 28 C 0.09 1.10 6.60 -2.49 -0.02 1.08 16 29 H 0.22 0.93 7.80 -54.10 -0.42 0.51 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 33 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.38 8.06 -51.93 -0.42 -0.04 16 37 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.38 0.73 9.12 45.56 0.42 1.15 16 39 H 0.40 3.69 8.54 -40.82 -0.35 3.34 16 40 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 41 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 1.40 8.04 -51.92 -0.42 0.98 16 LS Contribution 397.45 15.07 5.99 5.99 Total: -1.00 -39.74 397.45 -7.85 -47.59 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.77 Total: 1.03 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -0.44 Total: -2.28 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: -0.10 Total: -41.15 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.30 Total: -23.73 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -39.74 -7.85 -47.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719078783.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.202 kcal (2) G-P(sol) polarization free energy of solvation -39.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds