Wall clock time and date at job start Sat Apr 11 2020 05:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52991 * 109.47412 * 331.48565 * 3 2 1 5 5 C 1.53000 * 109.47110 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.47131 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99736 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00006 * 179.97438 * 6 5 4 9 9 C 1.47026 * 125.65092 * 359.97438 * 8 6 5 10 10 C 1.54321 * 107.27395 * 178.99355 * 9 8 6 11 11 H 1.08994 * 110.71935 * 96.16904 * 10 9 8 12 12 O 1.42896 * 110.87163 * 219.37297 * 10 9 8 13 13 C 1.55156 * 102.94252 * 337.80751 * 10 9 8 14 14 H 1.09005 * 111.00506 * 277.39412 * 13 10 9 15 15 N 1.46499 * 111.00695 * 153.57519 * 13 10 9 16 16 C 1.34778 * 120.00278 * 158.17620 * 15 13 10 17 17 O 1.21278 * 119.99748 * 0.02562 * 16 15 13 18 18 C 1.50697 * 120.00209 * 180.02562 * 16 15 13 19 19 S 1.80999 * 109.47181 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99825 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00405 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99855 * 179.72221 * 20 19 18 23 23 N 1.31634 * 119.99756 * 0.27728 * 22 20 19 24 24 Si 1.86803 * 120.00005 * 180.27923 * 22 20 19 25 25 H 1.48498 * 109.47174 * 90.00123 * 24 22 20 26 26 H 1.48501 * 109.47062 * 210.00074 * 24 22 20 27 27 H 1.48504 * 109.46913 * 329.99873 * 24 22 20 28 28 C 1.47466 * 125.63156 * 180.02562 * 8 6 5 29 29 H 4.44645 * 5.63251 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.46346 * 211.48780 * 3 2 1 31 31 H 1.08998 * 109.47069 * 91.49327 * 3 2 1 32 32 H 1.09004 * 109.47190 * 60.00732 * 4 3 2 33 33 H 1.08998 * 109.47625 * 300.00421 * 4 3 2 34 34 H 1.09001 * 109.46844 * 60.00705 * 5 4 3 35 35 H 1.08996 * 109.47530 * 300.00238 * 5 4 3 36 36 H 1.09000 * 109.88220 * 59.57591 * 9 8 6 37 37 H 1.09002 * 110.00740 * 298.48728 * 9 8 6 38 38 H 0.96699 * 114.00086 * 293.60583 * 12 10 9 39 39 H 0.97000 * 119.99972 * 338.17976 * 15 13 10 40 40 H 1.08999 * 109.47278 * 59.99800 * 18 16 15 41 41 H 1.09002 * 109.46837 * 300.00183 * 18 16 15 42 42 H 0.97000 * 119.99219 * 179.97438 * 23 22 20 43 43 H 1.08999 * 110.35096 * 85.23368 * 28 8 6 44 44 H 1.09008 * 110.40506 * 322.89834 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.2665 0.6886 5 6 4.6866 -1.2655 0.6891 6 6 5.1896 -2.5140 1.3668 7 8 4.4019 -3.3250 1.8057 8 7 6.5147 -2.7298 1.4842 9 6 7.5751 -1.8348 0.9982 10 6 8.9262 -2.4772 1.3768 11 1 9.3292 -3.0487 0.5408 12 8 9.8601 -1.4838 1.8046 13 6 8.5472 -3.4166 2.5520 14 1 8.4993 -2.8668 3.4920 15 7 9.4837 -4.5388 2.6503 16 6 9.6158 -5.2065 3.8137 17 8 8.9590 -4.8785 4.7790 18 6 10.5797 -6.3604 3.9150 19 16 10.5279 -7.0445 5.5899 20 6 11.7133 -8.3381 5.4288 21 1 12.2151 -8.4965 4.4856 22 6 12.0070 -9.1497 6.5159 23 7 11.3959 -8.9564 7.6656 24 14 13.2694 -10.5162 6.3473 25 1 14.6155 -9.9918 6.6913 26 1 12.9213 -11.6281 7.2680 27 1 13.2751 -11.0151 4.9485 28 6 7.1409 -3.9035 2.1207 29 1 -1.0498 -0.0002 0.0003 30 1 3.0088 0.8772 0.5368 31 1 3.0093 0.0276 -1.0273 32 1 2.7938 -2.1431 0.1518 33 1 2.7933 -1.2935 1.7159 34 1 5.0491 -0.3890 1.2262 35 1 5.0503 -1.2384 -0.3380 36 1 7.4827 -0.8583 1.4735 37 1 7.5058 -1.7280 -0.0844 38 1 10.1295 -0.8708 1.1070 39 1 10.0089 -4.8014 1.8782 40 1 11.5887 -6.0114 3.6957 41 1 10.2986 -7.1325 3.1987 42 1 11.6009 -9.5238 8.4251 43 1 7.2253 -4.7222 1.4062 44 1 6.5644 -4.2165 2.9913 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001719078783.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:58 Heat of formation + Delta-G solvation = -103.377986 kcal Electronic energy + Delta-G solvation = -25848.104204 eV Core-core repulsion = 21891.745822 eV Total energy + Delta-G solvation = -3956.358383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57878 -40.52947 -39.12034 -36.70950 -36.41072 -35.43366 -34.58438 -33.30305 -31.90764 -30.16572 -29.53226 -28.30100 -27.63392 -24.92133 -23.04435 -22.37629 -21.83621 -20.41883 -19.86381 -19.10415 -18.62931 -18.21153 -17.78219 -17.37665 -16.90538 -16.87650 -16.81425 -16.37230 -16.03800 -15.65229 -15.20447 -15.08569 -14.81155 -14.71135 -14.45192 -14.30452 -13.87323 -13.79430 -13.56589 -13.41725 -13.28505 -13.21890 -13.16620 -12.88650 -12.61641 -12.49087 -11.97466 -11.82666 -11.69578 -11.46729 -11.17021 -11.14279 -11.00529 -10.96459 -10.90859 -10.33860 -10.27772 -9.76982 -8.67743 -8.34703 -6.13299 1.23480 1.42864 1.43602 1.50563 1.55534 1.57532 1.71630 1.92074 1.92768 2.24874 2.27907 2.99694 3.03858 3.20392 3.30949 3.52166 3.54535 3.69546 3.89777 3.98046 4.06837 4.13156 4.14011 4.24001 4.30747 4.46127 4.49778 4.58056 4.62714 4.66830 4.70101 4.76068 4.79843 4.88067 5.02630 5.19168 5.21792 5.32736 5.36049 5.41818 6.19726 6.38124 6.42006 6.72470 6.93414 7.06530 7.06997 7.17706 8.74607 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022227 B = 0.001775 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.440514 B =15770.795633 C =16645.134234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.216 4.216 3 C -0.008 4.008 4 C -0.098 4.098 5 C -0.121 4.121 6 C 0.517 3.483 7 O -0.594 6.594 8 N -0.616 5.616 9 C 0.072 3.928 10 C 0.103 3.897 11 H 0.117 0.883 12 O -0.567 6.567 13 C 0.138 3.862 14 H 0.077 0.923 15 N -0.698 5.698 16 C 0.536 3.464 17 O -0.564 6.564 18 C -0.127 4.127 19 S -0.157 6.157 20 C -0.545 4.545 21 H 0.085 0.915 22 C 0.012 3.988 23 N -0.913 5.913 24 Si 1.000 3.000 25 H -0.267 1.267 26 H -0.279 1.279 27 H -0.257 1.257 28 C 0.098 3.902 29 H 0.237 0.763 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.125 0.875 35 H 0.136 0.864 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.407 0.593 39 H 0.422 0.578 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.271 0.729 43 H 0.086 0.914 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.165 22.264 -26.399 35.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.216 4.216 3 C -0.044 4.044 4 C -0.137 4.137 5 C -0.160 4.160 6 C 0.308 3.692 7 O -0.474 6.474 8 N -0.351 5.351 9 C -0.050 4.050 10 C 0.043 3.957 11 H 0.134 0.866 12 O -0.376 6.376 13 C 0.031 3.969 14 H 0.095 0.905 15 N -0.353 5.353 16 C 0.322 3.678 17 O -0.442 6.442 18 C -0.279 4.279 19 S 0.071 5.929 20 C -0.693 4.693 21 H 0.103 0.897 22 C -0.192 4.192 23 N -0.549 5.549 24 Si 0.822 3.178 25 H -0.192 1.192 26 H -0.205 1.205 27 H -0.180 1.180 28 C -0.027 4.027 29 H 0.253 0.747 30 H 0.125 0.875 31 H 0.131 0.869 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.143 0.857 35 H 0.154 0.846 36 H 0.116 0.884 37 H 0.142 0.858 38 H 0.259 0.741 39 H 0.261 0.739 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.804 22.071 -23.867 33.955 hybrid contribution 1.082 -1.432 -0.975 2.043 sum -8.722 20.639 -24.843 33.454 Atomic orbital electron populations 1.25711 0.97190 1.00384 1.00897 1.23904 0.95977 1.00946 1.00761 1.18853 0.83489 0.98541 1.03521 1.21212 0.94086 0.97649 1.00717 1.21706 0.95940 0.94309 1.04022 1.21400 0.79924 0.89000 0.78872 1.90739 1.55670 1.49656 1.51326 1.48407 1.05661 1.22742 1.58291 1.23092 0.84857 0.94373 1.02714 1.22947 0.89035 0.89159 0.94602 0.86573 1.86630 1.62313 1.46123 1.42578 1.21931 0.87457 0.87117 1.00378 0.90473 1.45458 1.43618 1.32990 1.13189 1.20183 0.81978 0.82845 0.82783 1.90717 1.47245 1.67558 1.38658 1.23356 1.02267 0.98948 1.03291 1.85674 1.56570 1.39957 1.10745 1.23213 1.26828 1.18207 1.01073 0.89658 1.26156 0.98825 1.00364 0.93876 1.70198 1.42440 1.39853 1.02418 0.84932 0.77486 0.76574 0.78843 1.19224 1.20465 1.18046 1.22443 0.92671 0.89934 0.97672 0.74679 0.87454 0.86946 0.92793 0.93477 0.85679 0.84628 0.88393 0.85781 0.74064 0.73936 0.86742 0.86798 0.92037 0.89637 0.93671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.32 19.25 74.32 1.43 -1.89 16 2 C -0.22 -3.34 13.34 31.12 0.42 -2.93 16 3 C -0.01 -0.07 5.70 28.79 0.16 0.10 16 4 C -0.10 -1.35 4.46 30.59 0.14 -1.21 16 5 C -0.12 -1.05 4.89 29.85 0.15 -0.90 16 6 C 0.52 10.53 7.85 87.66 0.69 11.21 16 7 O -0.59 -19.29 16.24 -3.03 -0.05 -19.34 16 8 N -0.62 -10.51 3.33 -811.63 -2.70 -13.21 16 9 C 0.07 0.45 6.27 86.73 0.54 0.99 16 10 C 0.10 0.97 3.96 31.78 0.13 1.10 16 11 H 0.12 0.38 8.00 -2.39 -0.02 0.37 16 12 O -0.57 -5.90 13.40 -148.98 -2.00 -7.90 16 13 C 0.14 3.02 3.09 46.39 0.14 3.16 16 14 H 0.08 2.32 7.64 -2.38 -0.02 2.30 16 15 N -0.70 -16.62 5.21 -435.93 -2.27 -18.89 16 16 C 0.54 19.73 7.85 87.66 0.69 20.42 16 17 O -0.56 -26.92 15.55 -3.02 -0.05 -26.96 16 18 C -0.13 -4.97 6.16 71.23 0.44 -4.53 16 19 S -0.16 -8.78 20.57 -56.49 -1.16 -9.95 16 20 C -0.55 -31.19 9.50 67.96 0.65 -30.54 16 21 H 0.09 4.48 7.80 -2.91 -0.02 4.46 16 22 C 0.01 0.71 5.49 84.86 0.47 1.18 16 23 N -0.91 -56.69 13.22 21.65 0.29 -56.41 16 24 Si 1.00 43.67 29.55 68.60 2.03 45.70 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 26 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 28 C 0.10 2.30 6.60 86.86 0.57 2.88 16 29 H 0.24 1.93 7.80 -4.43 -0.03 1.90 16 30 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.96 8.10 -2.38 -0.02 0.94 16 33 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 34 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.14 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.10 0.41 8.06 -2.39 -0.02 0.39 16 37 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 38 H 0.41 -0.45 9.12 -74.06 -0.68 -1.13 16 39 H 0.42 6.41 8.54 -92.71 -0.79 5.62 16 40 H 0.11 3.94 8.14 -2.39 -0.02 3.93 16 41 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 42 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 43 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.04 1.50 8.04 -2.38 -0.02 1.48 16 Total: -1.00 -96.69 397.45 0.25 -96.45 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -0.44 Total: 11.48 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 6.61 Total: -0.97 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -4.69 Total: -88.51 kcal Atomic # 8 Polarization: -52.11 SS G_CDS: -2.09 Total: -54.20 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.95 kcal Total: -96.69 0.25 -96.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719078783.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.931 kcal (2) G-P(sol) polarization free energy of solvation -96.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds