Wall clock time and date at job start Sat Apr 11 2020 05:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47169 * 2 1 4 4 H 1.08990 * 109.47296 * 305.00393 * 3 2 1 5 5 C 1.53000 * 109.47053 * 185.00203 * 3 2 1 6 6 N 1.46497 * 109.47033 * 185.00403 * 5 3 2 7 7 C 1.34780 * 119.99887 * 179.97438 * 6 5 3 8 8 O 1.21275 * 120.00053 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99787 * 179.97438 * 7 6 5 10 10 S 1.80998 * 109.46964 * 180.02562 * 9 7 6 11 11 C 1.76204 * 100.00166 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99709 * 0.02562 * 11 10 9 13 13 C 1.38800 * 120.00166 * 179.97438 * 11 10 9 14 14 N 1.31628 * 119.99836 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99730 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47423 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47115 * 120.00441 * 15 13 11 18 18 H 1.48507 * 109.47199 * 239.99989 * 15 13 11 19 19 N 1.46498 * 109.46676 * 65.00584 * 3 2 1 20 20 C 1.34784 * 119.99987 * 274.99403 * 19 3 2 21 21 O 1.21614 * 119.99658 * 0.02562 * 20 19 3 22 22 C 1.47374 * 120.00031 * 180.02562 * 20 19 3 23 23 C 1.36416 * 127.19368 * 0.04157 * 22 20 19 24 24 O 1.33659 * 108.39475 * 179.97438 * 23 22 20 25 25 C 1.34210 * 110.90983 * 0.02562 * 24 23 22 26 26 C 1.34185 * 109.12736 * 0.02562 * 25 24 23 27 27 C 1.50691 * 127.02558 * 180.25933 * 26 25 24 28 28 H 1.08998 * 109.47436 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46881 * 299.99706 * 1 2 3 30 30 H 1.09001 * 109.47141 * 59.99717 * 1 2 3 31 31 H 1.09006 * 109.46881 * 240.00294 * 2 1 3 32 32 H 1.09001 * 109.47141 * 120.00283 * 2 1 3 33 33 H 1.09001 * 109.47342 * 305.00190 * 5 3 2 34 34 H 1.08995 * 109.47196 * 65.00206 * 5 3 2 35 35 H 0.97005 * 120.00304 * 359.97438 * 6 5 3 36 36 H 1.08994 * 109.47744 * 300.00919 * 9 7 6 37 37 H 1.09003 * 109.46931 * 60.00908 * 9 7 6 38 38 H 0.97000 * 119.99908 * 179.97438 * 14 13 11 39 39 H 0.96996 * 120.00198 * 95.00030 * 19 3 2 40 40 H 1.07990 * 125.80033 * 359.94891 * 23 22 20 41 41 H 1.08003 * 125.44117 * 180.02562 * 25 24 23 42 42 H 1.08998 * 109.47859 * 269.68503 * 27 26 25 43 43 H 1.09007 * 109.47107 * 29.68842 * 27 26 25 44 44 H 1.09000 * 109.47474 * 149.68205 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1258 6 7 4.0630 2.8167 -0.0059 7 6 5.3858 3.0628 -0.0858 8 8 6.1635 2.1482 -0.2574 9 6 5.8982 4.4748 0.0369 10 16 7.7021 4.4769 -0.1117 11 6 8.0216 6.2007 0.0642 12 1 7.2029 6.8892 0.2130 13 6 9.3255 6.6737 0.0126 14 7 10.3233 5.8345 -0.1682 15 14 9.6642 8.5012 0.1998 16 1 8.3819 9.2252 0.3911 17 1 10.5388 8.7242 1.3790 18 1 10.3413 9.0068 -1.0213 19 7 1.6525 2.0974 1.2519 20 6 0.4352 2.6644 1.3671 21 8 -0.3417 2.6319 0.4320 22 6 0.0456 3.3236 2.6263 23 6 0.7953 3.4460 3.7594 24 8 0.0774 4.1102 4.6704 25 6 -1.1301 4.4364 4.1839 26 6 -1.2328 3.9861 2.9240 27 6 -2.4139 4.1358 2.0003 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 3.9954 0.8311 0.6658 34 1 3.8498 1.0377 -1.0961 35 1 3.4410 3.5484 0.1310 36 1 5.4680 5.0877 -0.7550 37 1 5.6128 4.8818 1.0070 38 1 11.2345 6.1651 -0.2046 39 1 2.2720 2.1230 1.9978 40 1 1.7981 3.0697 3.8970 41 1 -1.8968 4.9753 4.7206 42 1 -3.0808 3.2823 2.1219 43 1 -2.9503 5.0534 2.2422 44 1 -2.0651 4.1802 0.9686 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721451592.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:01 Heat of formation + Delta-G solvation = -70.922572 kcal Electronic energy + Delta-G solvation = -26612.000684 eV Core-core repulsion = 22657.049674 eV Total energy + Delta-G solvation = -3954.951010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.92567 -40.27641 -39.07739 -36.68314 -34.17249 -33.86058 -32.98153 -32.45281 -30.75031 -29.99206 -27.87986 -27.54556 -25.51674 -24.26021 -23.39845 -21.50980 -20.69440 -20.53531 -20.26232 -18.46163 -17.84307 -16.87261 -16.58516 -16.44523 -16.24099 -15.76266 -15.44566 -15.19409 -14.98006 -14.82529 -14.10104 -13.98252 -13.68929 -13.67751 -13.44869 -13.35047 -13.31388 -12.95666 -12.81814 -12.64114 -12.38697 -11.88334 -11.81849 -11.75922 -11.39200 -11.10833 -11.08832 -11.04443 -10.77566 -10.21474 -9.88906 -9.83514 -9.52004 -9.34086 -9.10599 -9.05290 -8.99700 -8.26719 -6.53093 -6.24324 -3.95027 0.98058 1.67777 2.55335 2.74867 2.97689 3.03136 3.06116 3.19989 3.26605 3.31087 3.65799 4.13869 4.17963 4.23750 4.34097 4.63819 4.71525 4.81117 4.90993 5.05855 5.08866 5.11054 5.12958 5.25031 5.40651 5.45854 5.47911 5.53865 5.58142 5.61006 5.68577 5.74834 5.75642 5.84388 5.86574 6.09706 6.10134 6.15663 6.20617 6.49767 6.58596 7.15038 7.57450 7.60628 7.91731 8.33064 8.52964 9.21366 10.83159 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011636 B = 0.002495 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.739126 B =11219.310937 C =13000.886727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.137 3.863 4 H 0.098 0.902 5 C 0.113 3.887 6 N -0.740 5.740 7 C 0.532 3.468 8 O -0.515 6.515 9 C -0.154 4.154 10 S -0.060 6.060 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.724 5.724 20 C 0.590 3.410 21 O -0.525 6.525 22 C -0.237 4.237 23 C 0.026 3.974 24 O -0.170 6.170 25 C -0.047 4.047 26 C -0.132 4.132 27 C -0.086 4.086 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.399 0.601 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.400 0.600 40 H 0.211 0.789 41 H 0.207 0.793 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.655 -7.444 7.409 27.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.032 3.968 4 H 0.116 0.884 5 C -0.012 4.012 6 N -0.395 5.395 7 C 0.318 3.682 8 O -0.389 6.389 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.205 1.205 19 N -0.376 5.376 20 C 0.378 3.622 21 O -0.402 6.402 22 C -0.242 4.242 23 C -0.045 4.045 24 O -0.065 6.065 25 C -0.113 4.113 26 C -0.134 4.134 27 C -0.143 4.143 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.233 0.767 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.234 0.766 40 H 0.227 0.773 41 H 0.224 0.776 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.628 -8.959 6.688 27.047 hybrid contribution -0.609 2.531 0.672 2.689 sum -25.237 -6.428 7.360 27.063 Atomic orbital electron populations 1.21788 0.94542 1.00681 1.03077 1.21892 0.97246 0.95022 1.02907 1.21352 0.93654 0.94376 0.87409 0.88388 1.21600 0.91356 0.84735 1.03501 1.46006 1.07848 1.08841 1.76844 1.20324 0.81328 0.91142 0.75374 1.90711 1.55431 1.46144 1.46649 1.23532 1.06881 0.95140 1.04891 1.85393 0.91905 1.11035 1.94986 1.22904 0.95453 0.92404 1.57561 0.90886 1.24996 0.95077 0.98981 0.94551 1.70024 0.99476 1.34493 1.46279 0.86113 0.78427 0.82960 0.77978 1.19610 1.20561 1.20543 1.45948 1.16466 1.58243 1.16967 1.17181 0.81408 0.77399 0.86217 1.90787 1.50970 1.58811 1.39676 1.21414 0.96835 1.09969 0.95943 1.24480 0.97306 0.95716 0.87013 1.83804 1.24597 1.57464 1.40623 1.23752 0.86919 1.05644 0.94965 1.21418 0.95829 1.00866 0.95291 1.20231 0.93503 1.01442 0.99128 0.93485 0.92522 0.92056 0.90501 0.91455 0.90889 0.89864 0.76703 0.89219 0.89276 0.92215 0.76581 0.77283 0.77635 0.91276 0.91738 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.51 37.16 0.32 -0.97 16 2 C -0.13 -1.01 5.61 -26.73 -0.15 -1.16 16 3 C 0.14 1.14 2.42 -67.93 -0.16 0.98 16 4 H 0.10 0.95 7.58 -51.93 -0.39 0.56 16 5 C 0.11 1.13 5.23 -4.04 -0.02 1.11 16 6 N -0.74 -8.99 5.39 -60.30 -0.32 -9.31 16 7 C 0.53 9.37 7.85 -10.98 -0.09 9.29 16 8 O -0.52 -11.15 15.86 5.56 0.09 -11.06 16 9 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 10 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 11 C -0.53 -15.08 9.50 30.94 0.29 -14.78 16 12 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -25.95 13.22 55.49 0.73 -25.21 16 15 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 N -0.72 -5.60 4.46 -54.90 -0.24 -5.85 16 20 C 0.59 5.82 6.38 -12.54 -0.08 5.74 16 21 O -0.53 -6.56 12.54 5.27 0.07 -6.49 16 22 C -0.24 -2.15 6.31 -103.28 -0.65 -2.80 16 23 C 0.03 0.18 11.61 30.08 0.35 0.53 16 24 O -0.17 -1.36 10.52 7.65 0.08 -1.28 16 25 C -0.05 -0.33 11.96 29.30 0.35 0.02 16 26 C -0.13 -1.16 6.37 -102.49 -0.65 -1.82 16 27 C -0.09 -0.68 10.00 36.00 0.36 -0.32 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.58 5.64 -51.93 -0.29 0.29 16 30 H 0.06 0.62 7.84 -51.93 -0.41 0.21 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.40 4.11 8.14 -40.82 -0.33 3.78 16 36 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 37 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.40 2.40 7.57 -40.82 -0.31 2.09 16 40 H 0.21 0.77 7.47 -52.49 -0.39 0.38 16 41 H 0.21 0.74 8.06 -52.48 -0.42 0.31 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.82 6.92 -51.93 -0.36 0.46 16 LS Contribution 385.47 15.07 5.81 5.81 Total: -1.00 -36.23 385.47 -7.30 -43.53 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.26 Total: 2.43 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -0.01 Total: -5.00 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.16 Total: -40.37 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.23 Total: -18.84 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.23 -7.30 -43.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721451592.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.391 kcal (2) G-P(sol) polarization free energy of solvation -36.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds