Wall clock time and date at job start Sat Apr 11 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47169 * 2 1 4 4 H 1.08990 * 109.47296 * 305.00393 * 3 2 1 5 5 C 1.53000 * 109.47053 * 185.00203 * 3 2 1 6 6 N 1.46497 * 109.47033 * 185.00403 * 5 3 2 7 7 C 1.34780 * 119.99887 * 179.97438 * 6 5 3 8 8 O 1.21275 * 120.00053 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99787 * 179.97438 * 7 6 5 10 10 S 1.80998 * 109.46964 * 180.02562 * 9 7 6 11 11 C 1.76204 * 100.00166 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99709 * 0.02562 * 11 10 9 13 13 C 1.38800 * 120.00166 * 179.97438 * 11 10 9 14 14 N 1.31628 * 119.99836 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99730 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47423 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47115 * 120.00441 * 15 13 11 18 18 H 1.48507 * 109.47199 * 239.99989 * 15 13 11 19 19 N 1.46498 * 109.46676 * 65.00584 * 3 2 1 20 20 C 1.34784 * 119.99987 * 274.99403 * 19 3 2 21 21 O 1.21614 * 119.99658 * 0.02562 * 20 19 3 22 22 C 1.47374 * 120.00031 * 180.02562 * 20 19 3 23 23 C 1.36416 * 127.19368 * 0.04157 * 22 20 19 24 24 O 1.33659 * 108.39475 * 179.97438 * 23 22 20 25 25 C 1.34210 * 110.90983 * 0.02562 * 24 23 22 26 26 C 1.34185 * 109.12736 * 0.02562 * 25 24 23 27 27 C 1.50691 * 127.02558 * 180.25933 * 26 25 24 28 28 H 1.08998 * 109.47436 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46881 * 299.99706 * 1 2 3 30 30 H 1.09001 * 109.47141 * 59.99717 * 1 2 3 31 31 H 1.09006 * 109.46881 * 240.00294 * 2 1 3 32 32 H 1.09001 * 109.47141 * 120.00283 * 2 1 3 33 33 H 1.09001 * 109.47342 * 305.00190 * 5 3 2 34 34 H 1.08995 * 109.47196 * 65.00206 * 5 3 2 35 35 H 0.97005 * 120.00304 * 359.97438 * 6 5 3 36 36 H 1.08994 * 109.47744 * 300.00919 * 9 7 6 37 37 H 1.09003 * 109.46931 * 60.00908 * 9 7 6 38 38 H 0.97000 * 119.99908 * 179.97438 * 14 13 11 39 39 H 0.96996 * 120.00198 * 95.00030 * 19 3 2 40 40 H 1.07990 * 125.80033 * 359.94891 * 23 22 20 41 41 H 1.08003 * 125.44117 * 180.02562 * 25 24 23 42 42 H 1.08998 * 109.47859 * 269.68503 * 27 26 25 43 43 H 1.09007 * 109.47107 * 29.68842 * 27 26 25 44 44 H 1.09000 * 109.47474 * 149.68205 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1258 6 7 4.0630 2.8167 -0.0059 7 6 5.3858 3.0628 -0.0858 8 8 6.1635 2.1482 -0.2574 9 6 5.8982 4.4748 0.0369 10 16 7.7021 4.4769 -0.1117 11 6 8.0216 6.2007 0.0642 12 1 7.2029 6.8892 0.2130 13 6 9.3255 6.6737 0.0126 14 7 10.3233 5.8345 -0.1682 15 14 9.6642 8.5012 0.1998 16 1 8.3819 9.2252 0.3911 17 1 10.5388 8.7242 1.3790 18 1 10.3413 9.0068 -1.0213 19 7 1.6525 2.0974 1.2519 20 6 0.4352 2.6644 1.3671 21 8 -0.3417 2.6319 0.4320 22 6 0.0456 3.3236 2.6263 23 6 0.7953 3.4460 3.7594 24 8 0.0774 4.1102 4.6704 25 6 -1.1301 4.4364 4.1839 26 6 -1.2328 3.9861 2.9240 27 6 -2.4139 4.1358 2.0003 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 3.9954 0.8311 0.6658 34 1 3.8498 1.0377 -1.0961 35 1 3.4410 3.5484 0.1310 36 1 5.4680 5.0877 -0.7550 37 1 5.6128 4.8818 1.0070 38 1 11.2345 6.1651 -0.2046 39 1 2.2720 2.1230 1.9978 40 1 1.7981 3.0697 3.8970 41 1 -1.8968 4.9753 4.7206 42 1 -3.0808 3.2823 2.1219 43 1 -2.9503 5.0534 2.2422 44 1 -2.0651 4.1802 0.9686 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721451592.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:00 Heat of formation + Delta-G solvation = -97.005387 kcal Electronic energy + Delta-G solvation = -26613.131719 eV Core-core repulsion = 22657.049674 eV Total energy + Delta-G solvation = -3956.082046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.49727 -41.14479 -40.32188 -37.58313 -35.01125 -34.77115 -34.58000 -33.67235 -31.58848 -31.11906 -28.94981 -28.12400 -27.64233 -25.00144 -24.21718 -22.21648 -21.62191 -21.28610 -21.14957 -19.86727 -19.00548 -17.85119 -17.61111 -17.30368 -17.16534 -16.87954 -16.64705 -16.42667 -16.23888 -15.80860 -15.60718 -14.86979 -14.66855 -14.59335 -14.44581 -14.30054 -14.15407 -13.95157 -13.91483 -13.48439 -13.39948 -13.15679 -13.02455 -12.90586 -12.63487 -12.52819 -12.41963 -12.15932 -11.80351 -11.70433 -11.15764 -10.99877 -10.98252 -10.54330 -10.27009 -10.17249 -10.07460 -9.59939 -8.65687 -8.34902 -6.12200 0.38268 1.09425 1.27119 1.41236 1.47040 1.58045 1.60585 1.98876 2.12827 2.25829 2.29451 2.36319 2.99522 3.31914 3.52161 3.64035 3.67690 3.91347 4.02494 4.07635 4.12924 4.29009 4.35478 4.40222 4.50968 4.51679 4.53914 4.67971 4.79820 4.81451 4.92844 4.97221 5.04688 5.06674 5.10123 5.16146 5.36012 5.42496 5.42853 5.49747 5.52887 6.02094 6.20170 6.42866 6.50426 7.07025 7.20425 7.21950 8.74425 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011636 B = 0.002495 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.739126 B =11219.310937 C =13000.886727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.149 3.851 4 H 0.086 0.914 5 C 0.116 3.884 6 N -0.713 5.713 7 C 0.537 3.463 8 O -0.560 6.560 9 C -0.132 4.132 10 S -0.147 6.147 11 C -0.545 4.545 12 H 0.081 0.919 13 C 0.014 3.986 14 N -0.910 5.910 15 Si 0.997 3.003 16 H -0.258 1.258 17 H -0.273 1.273 18 H -0.275 1.275 19 N -0.713 5.713 20 C 0.590 3.410 21 O -0.558 6.558 22 C -0.266 4.266 23 C 0.039 3.961 24 O -0.178 6.178 25 C -0.038 4.038 26 C -0.163 4.163 27 C -0.081 4.081 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.412 0.588 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.271 0.729 39 H 0.410 0.590 40 H 0.242 0.758 41 H 0.239 0.761 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.932 -6.429 8.807 29.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.044 3.956 4 H 0.104 0.896 5 C -0.008 4.008 6 N -0.368 5.368 7 C 0.323 3.677 8 O -0.438 6.438 9 C -0.283 4.283 10 S 0.080 5.920 11 C -0.693 4.693 12 H 0.099 0.901 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.819 3.181 16 H -0.181 1.181 17 H -0.199 1.199 18 H -0.200 1.200 19 N -0.366 5.366 20 C 0.379 3.621 21 O -0.438 6.438 22 C -0.270 4.270 23 C -0.032 4.032 24 O -0.072 6.072 25 C -0.104 4.104 26 C -0.165 4.165 27 C -0.138 4.138 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.248 0.752 36 H 0.122 0.878 37 H 0.129 0.871 38 H 0.080 0.920 39 H 0.247 0.753 40 H 0.258 0.742 41 H 0.255 0.745 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.951 -7.944 8.108 28.324 hybrid contribution -0.351 2.145 0.255 2.189 sum -26.302 -5.799 8.363 28.202 Atomic orbital electron populations 1.21701 0.95401 1.00789 1.01582 1.21873 0.96249 0.94473 1.04043 1.21179 0.92152 0.94939 0.87354 0.89572 1.21715 0.92178 0.83152 1.03737 1.45724 1.06021 1.10454 1.74558 1.19961 0.82645 0.89711 0.75358 1.90705 1.56947 1.46932 1.49190 1.23384 1.01104 0.97193 1.06641 1.85537 0.99254 1.11799 1.95382 1.23228 0.96085 0.92623 1.57381 0.90063 1.26099 0.94780 1.04328 0.93900 1.70179 1.00030 1.37025 1.47472 0.84926 0.78731 0.76354 0.78070 1.18137 1.19866 1.20043 1.45829 1.16138 1.57606 1.17053 1.17341 0.81437 0.77090 0.86184 1.90775 1.51986 1.60177 1.40834 1.21505 0.97831 1.11367 0.96344 1.25036 0.97973 0.94198 0.85960 1.83832 1.25006 1.57480 1.40902 1.24324 0.86967 1.04578 0.94495 1.21683 0.96233 1.02189 0.96394 1.20161 0.93563 1.02431 0.97636 0.92506 0.93949 0.93623 0.89448 0.90257 0.90107 0.90116 0.75200 0.87750 0.87067 0.91992 0.75303 0.74225 0.74529 0.91333 0.89806 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.51 71.98 0.61 -1.74 16 2 C -0.13 -1.74 5.61 30.59 0.17 -1.57 16 3 C 0.15 2.25 2.42 44.99 0.11 2.36 16 4 H 0.09 1.59 7.58 -2.39 -0.02 1.57 16 5 C 0.12 2.11 5.23 86.38 0.45 2.56 16 6 N -0.71 -15.87 5.39 -463.07 -2.49 -18.36 16 7 C 0.54 18.29 7.85 87.66 0.69 18.98 16 8 O -0.56 -24.16 15.86 -3.01 -0.05 -24.21 16 9 C -0.13 -5.00 6.16 71.24 0.44 -4.56 16 10 S -0.15 -7.95 20.57 -56.49 -1.16 -9.11 16 11 C -0.55 -30.67 9.50 67.95 0.65 -30.03 16 12 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 13 C 0.01 0.77 5.49 84.86 0.47 1.24 16 14 N -0.91 -55.29 13.22 21.65 0.29 -55.01 16 15 Si 1.00 43.18 29.55 68.60 2.03 45.20 16 16 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 17 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 N -0.71 -9.83 4.46 -445.85 -1.99 -11.82 16 20 C 0.59 11.21 6.38 86.65 0.55 11.76 16 21 O -0.56 -14.11 12.54 -4.07 -0.05 -14.16 16 22 C -0.27 -4.52 6.31 -18.99 -0.12 -4.64 16 23 C 0.04 0.46 11.61 67.39 0.78 1.25 16 24 O -0.18 -2.43 10.52 4.46 0.05 -2.38 16 25 C -0.04 -0.46 11.96 66.89 0.80 0.34 16 26 C -0.16 -2.72 6.37 -18.49 -0.12 -2.83 16 27 C -0.08 -1.27 10.00 71.23 0.71 -0.56 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.04 0.85 5.64 -2.38 -0.01 0.84 16 30 H 0.04 0.92 7.84 -2.39 -0.02 0.90 16 31 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.41 7.41 8.14 -92.70 -0.75 6.65 16 36 H 0.10 3.66 8.14 -2.40 -0.02 3.64 16 37 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 38 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 39 H 0.41 3.87 7.57 -92.71 -0.70 3.17 16 40 H 0.24 0.98 7.47 -2.92 -0.02 0.96 16 41 H 0.24 1.01 8.06 -2.91 -0.02 0.99 16 42 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.06 1.20 6.92 -2.39 -0.02 1.18 16 Total: -1.00 -81.10 385.47 2.39 -78.71 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -0.42 Total: 18.59 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 6.19 Total: -7.45 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -4.20 Total: -85.19 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -0.05 Total: -40.75 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.16 Total: -9.11 kcal Total: -81.10 2.39 -78.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721451592.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.294 kcal (2) G-P(sol) polarization free energy of solvation -81.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds