Wall clock time and date at job start Sat Apr 11 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47538 * 2 1 4 4 H 1.09003 * 109.46779 * 54.99857 * 3 2 1 5 5 C 1.53001 * 109.47519 * 174.99678 * 3 2 1 6 6 N 1.46493 * 109.47084 * 175.00001 * 5 3 2 7 7 C 1.34784 * 119.99864 * 180.02562 * 6 5 3 8 8 O 1.21283 * 119.99649 * 359.72839 * 7 6 5 9 9 C 1.50694 * 119.99988 * 179.72721 * 7 6 5 10 10 S 1.81005 * 109.47244 * 179.97438 * 9 7 6 11 11 C 1.76192 * 100.00090 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00308 * 0.02562 * 11 10 9 13 13 C 1.38797 * 119.99747 * 180.02562 * 11 10 9 14 14 N 1.31628 * 120.00171 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 119.99848 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47362 * 89.99969 * 15 13 11 17 17 H 1.48505 * 109.46829 * 209.99955 * 15 13 11 18 18 H 1.48498 * 109.47111 * 329.99341 * 15 13 11 19 19 N 1.46499 * 109.47039 * 295.00201 * 3 2 1 20 20 C 1.34776 * 119.99921 * 85.00104 * 19 3 2 21 21 O 1.21615 * 120.00436 * 359.97438 * 20 19 3 22 22 C 1.47381 * 119.99925 * 179.97438 * 20 19 3 23 23 C 1.36417 * 127.18983 * 359.68071 * 22 20 19 24 24 O 1.33656 * 108.39594 * 179.83221 * 23 22 20 25 25 C 1.34213 * 110.90483 * 0.45544 * 24 23 22 26 26 C 1.34174 * 109.12513 * 359.71675 * 25 24 23 27 27 C 1.50700 * 127.02057 * 179.97438 * 26 25 24 28 28 H 1.09000 * 109.47676 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47378 * 299.99988 * 1 2 3 30 30 H 1.09006 * 109.46976 * 59.99931 * 1 2 3 31 31 H 1.08998 * 109.47378 * 240.00012 * 2 1 3 32 32 H 1.08998 * 109.47160 * 120.00399 * 2 1 3 33 33 H 1.09007 * 109.46593 * 55.00258 * 5 3 2 34 34 H 1.09006 * 109.47216 * 295.00716 * 5 3 2 35 35 H 0.97000 * 120.00740 * 359.72857 * 6 5 3 36 36 H 1.08998 * 109.47224 * 299.99701 * 9 7 6 37 37 H 1.09002 * 109.47054 * 60.00213 * 9 7 6 38 38 H 0.97000 * 119.99868 * 179.97438 * 14 13 11 39 39 H 0.97000 * 119.99498 * 264.99263 * 19 3 2 40 40 H 1.08002 * 125.80403 * 0.02562 * 23 22 20 41 41 H 1.07996 * 125.43574 * 179.72436 * 25 24 23 42 42 H 1.09004 * 109.47251 * 270.02980 * 27 26 25 43 43 H 1.09007 * 109.47273 * 30.02971 * 27 26 25 44 44 H 1.09003 * 109.47554 * 150.02673 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1258 6 7 4.0631 2.8167 0.0060 7 6 5.3858 3.0628 0.0860 8 8 6.1631 2.1486 0.2620 9 6 5.8988 4.4738 -0.0434 10 16 7.7026 4.4762 0.1070 11 6 8.0228 6.1989 -0.0773 12 1 7.2044 6.8870 -0.2295 13 6 9.3268 6.6717 -0.0269 14 7 10.3242 5.8331 0.1592 15 14 9.6662 8.4983 -0.2215 16 1 9.6413 9.1514 1.1119 17 1 11.0018 8.6902 -0.8418 18 1 8.6255 9.1054 -1.0896 19 7 1.6525 2.0974 -1.2518 20 6 0.4352 2.6644 -1.3669 21 8 -0.3417 2.6320 -0.4318 22 6 0.0455 3.3239 -2.6260 23 6 0.7972 3.4509 -3.7573 24 8 0.0771 4.1097 -4.6704 25 6 -1.1300 4.4369 -4.1834 26 6 -1.2320 3.9878 -2.9231 27 6 -2.4145 4.1347 -2.0005 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.9954 0.8310 -0.6659 34 1 3.8499 1.0375 1.0961 35 1 3.4414 3.5478 -0.1351 36 1 5.6145 4.8761 -1.0157 37 1 5.4681 5.0907 0.7453 38 1 11.2355 6.1635 0.1941 39 1 2.2720 2.1231 -1.9977 40 1 1.8021 3.0793 -3.8932 41 1 -1.8968 4.9755 -4.7202 42 1 -2.3182 5.0590 -1.4308 43 1 -3.3323 4.1638 -2.5878 44 1 -2.4483 3.2875 -1.3154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721451593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:04 Heat of formation + Delta-G solvation = -70.900862 kcal Electronic energy + Delta-G solvation = -26613.075708 eV Core-core repulsion = 22658.125640 eV Total energy + Delta-G solvation = -3954.950069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.92656 -40.27687 -39.07639 -36.68281 -34.17231 -33.86020 -32.98440 -32.45185 -30.74891 -29.99275 -27.88006 -27.54596 -25.51525 -24.25999 -23.39902 -21.50971 -20.69391 -20.53623 -20.26332 -18.46157 -17.84168 -16.87201 -16.58573 -16.44569 -16.24095 -15.76080 -15.44541 -15.19460 -14.97789 -14.82320 -14.11030 -13.98200 -13.70088 -13.64495 -13.49455 -13.36539 -13.26304 -12.95733 -12.81899 -12.64060 -12.38475 -11.87229 -11.82963 -11.76665 -11.39357 -11.11184 -11.08198 -11.04707 -10.78041 -10.21477 -9.88113 -9.84484 -9.52155 -9.34519 -9.09814 -9.05199 -8.99604 -8.27158 -6.53073 -6.24063 -3.94908 0.98072 1.67895 2.55377 2.74819 2.97777 3.03019 3.06070 3.20954 3.26412 3.30194 3.65725 4.13863 4.18172 4.23703 4.34078 4.63761 4.71504 4.81010 4.90866 5.05881 5.08850 5.11177 5.12823 5.24944 5.41322 5.45909 5.47921 5.53999 5.57999 5.61004 5.68321 5.74787 5.75434 5.84362 5.86408 6.09405 6.09996 6.15655 6.20407 6.49792 6.58595 7.15001 7.57218 7.60595 7.91710 8.32916 8.52940 9.21449 10.83338 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011630 B = 0.002497 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.927147 B =11212.481195 C =12998.490465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.137 3.863 4 H 0.098 0.902 5 C 0.113 3.887 6 N -0.740 5.740 7 C 0.532 3.468 8 O -0.515 6.515 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.724 5.724 20 C 0.590 3.410 21 O -0.525 6.525 22 C -0.237 4.237 23 C 0.026 3.974 24 O -0.170 6.170 25 C -0.047 4.047 26 C -0.132 4.132 27 C -0.087 4.087 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.399 0.601 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.400 0.600 40 H 0.211 0.789 41 H 0.207 0.793 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.654 -7.466 -7.406 27.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.032 3.968 4 H 0.116 0.884 5 C -0.012 4.012 6 N -0.395 5.395 7 C 0.318 3.682 8 O -0.389 6.389 9 C -0.305 4.305 10 S 0.167 5.833 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.376 5.376 20 C 0.378 3.622 21 O -0.402 6.402 22 C -0.242 4.242 23 C -0.045 4.045 24 O -0.065 6.065 25 C -0.113 4.113 26 C -0.134 4.134 27 C -0.143 4.143 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.233 0.767 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.234 0.766 40 H 0.227 0.773 41 H 0.224 0.776 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.624 -8.984 -6.678 27.049 hybrid contribution -0.607 2.561 -0.672 2.716 sum -25.230 -6.423 -7.350 27.053 Atomic orbital electron populations 1.21789 0.94552 1.00688 1.03067 1.21889 0.97241 0.95024 1.02912 1.21354 0.93657 0.94373 0.87413 0.88383 1.21602 0.91353 0.84731 1.03506 1.46005 1.07869 1.08874 1.76792 1.20326 0.81324 0.91127 0.75393 1.90713 1.55460 1.46147 1.46620 1.23532 1.06887 0.95153 1.04879 1.85389 0.91907 1.11092 1.94878 1.22861 0.95447 0.92492 1.57608 0.90938 1.24992 0.95069 0.98960 0.94545 1.70014 0.99520 1.34576 1.46170 0.86168 0.77823 0.83025 0.78491 1.20251 1.20736 1.19690 1.45947 1.16456 1.58250 1.16972 1.17180 0.81420 0.77392 0.86208 1.90787 1.50904 1.58942 1.39610 1.21412 0.96838 1.09896 0.96019 1.24484 0.97245 0.95795 0.86994 1.83804 1.24574 1.57692 1.40416 1.23747 0.87000 1.05470 0.95073 1.21414 0.95894 1.00733 0.95355 1.20236 0.92735 1.03564 0.97782 0.93477 0.92047 0.92538 0.91454 0.90497 0.90904 0.89847 0.76704 0.89273 0.89222 0.92160 0.76583 0.77281 0.77638 0.91137 0.91797 0.89930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.51 37.15 0.32 -0.96 16 2 C -0.13 -1.01 5.61 -26.74 -0.15 -1.16 16 3 C 0.14 1.14 2.42 -67.93 -0.16 0.98 16 4 H 0.10 0.96 7.58 -51.93 -0.39 0.56 16 5 C 0.11 1.13 5.23 -4.04 -0.02 1.11 16 6 N -0.74 -8.99 5.39 -60.29 -0.32 -9.32 16 7 C 0.53 9.38 7.85 -10.98 -0.09 9.29 16 8 O -0.52 -11.15 15.86 5.56 0.09 -11.06 16 9 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 10 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 11 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 12 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -25.96 13.22 55.49 0.73 -25.22 16 15 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 N -0.72 -5.60 4.46 -54.89 -0.24 -5.85 16 20 C 0.59 5.82 6.38 -12.54 -0.08 5.74 16 21 O -0.53 -6.56 12.54 5.26 0.07 -6.49 16 22 C -0.24 -2.15 6.31 -103.28 -0.65 -2.80 16 23 C 0.03 0.18 11.61 30.08 0.35 0.53 16 24 O -0.17 -1.36 10.52 7.65 0.08 -1.28 16 25 C -0.05 -0.33 11.96 29.30 0.35 0.02 16 26 C -0.13 -1.16 6.37 -102.50 -0.65 -1.81 16 27 C -0.09 -0.68 10.00 36.01 0.36 -0.32 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.62 7.84 -51.93 -0.41 0.21 16 30 H 0.06 0.58 5.64 -51.93 -0.29 0.28 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.40 4.11 8.13 -40.82 -0.33 3.78 16 36 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 37 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 39 H 0.40 2.40 7.57 -40.82 -0.31 2.09 16 40 H 0.21 0.77 7.47 -52.49 -0.39 0.38 16 41 H 0.21 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.08 0.79 6.91 -51.93 -0.36 0.43 16 LS Contribution 385.46 15.07 5.81 5.81 Total: -1.00 -36.22 385.46 -7.30 -43.52 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.26 Total: 2.46 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -0.01 Total: -5.00 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.16 Total: -40.39 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.23 Total: -18.84 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.22 -7.30 -43.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721451593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.383 kcal (2) G-P(sol) polarization free energy of solvation -36.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds