Wall clock time and date at job start Sat Apr 11 2020 05:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47538 * 2 1 4 4 H 1.09003 * 109.46779 * 54.99857 * 3 2 1 5 5 C 1.53001 * 109.47519 * 174.99678 * 3 2 1 6 6 N 1.46493 * 109.47084 * 175.00001 * 5 3 2 7 7 C 1.34784 * 119.99864 * 180.02562 * 6 5 3 8 8 O 1.21283 * 119.99649 * 359.72839 * 7 6 5 9 9 C 1.50694 * 119.99988 * 179.72721 * 7 6 5 10 10 S 1.81005 * 109.47244 * 179.97438 * 9 7 6 11 11 C 1.76192 * 100.00090 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00308 * 0.02562 * 11 10 9 13 13 C 1.38797 * 119.99747 * 180.02562 * 11 10 9 14 14 N 1.31628 * 120.00171 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 119.99848 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47362 * 89.99969 * 15 13 11 17 17 H 1.48505 * 109.46829 * 209.99955 * 15 13 11 18 18 H 1.48498 * 109.47111 * 329.99341 * 15 13 11 19 19 N 1.46499 * 109.47039 * 295.00201 * 3 2 1 20 20 C 1.34776 * 119.99921 * 85.00104 * 19 3 2 21 21 O 1.21615 * 120.00436 * 359.97438 * 20 19 3 22 22 C 1.47381 * 119.99925 * 179.97438 * 20 19 3 23 23 C 1.36417 * 127.18983 * 359.68071 * 22 20 19 24 24 O 1.33656 * 108.39594 * 179.83221 * 23 22 20 25 25 C 1.34213 * 110.90483 * 0.45544 * 24 23 22 26 26 C 1.34174 * 109.12513 * 359.71675 * 25 24 23 27 27 C 1.50700 * 127.02057 * 179.97438 * 26 25 24 28 28 H 1.09000 * 109.47676 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47378 * 299.99988 * 1 2 3 30 30 H 1.09006 * 109.46976 * 59.99931 * 1 2 3 31 31 H 1.08998 * 109.47378 * 240.00012 * 2 1 3 32 32 H 1.08998 * 109.47160 * 120.00399 * 2 1 3 33 33 H 1.09007 * 109.46593 * 55.00258 * 5 3 2 34 34 H 1.09006 * 109.47216 * 295.00716 * 5 3 2 35 35 H 0.97000 * 120.00740 * 359.72857 * 6 5 3 36 36 H 1.08998 * 109.47224 * 299.99701 * 9 7 6 37 37 H 1.09002 * 109.47054 * 60.00213 * 9 7 6 38 38 H 0.97000 * 119.99868 * 179.97438 * 14 13 11 39 39 H 0.97000 * 119.99498 * 264.99263 * 19 3 2 40 40 H 1.08002 * 125.80403 * 0.02562 * 23 22 20 41 41 H 1.07996 * 125.43574 * 179.72436 * 25 24 23 42 42 H 1.09004 * 109.47251 * 270.02980 * 27 26 25 43 43 H 1.09007 * 109.47273 * 30.02971 * 27 26 25 44 44 H 1.09003 * 109.47554 * 150.02673 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1258 6 7 4.0631 2.8167 0.0060 7 6 5.3858 3.0628 0.0860 8 8 6.1631 2.1486 0.2620 9 6 5.8988 4.4738 -0.0434 10 16 7.7026 4.4762 0.1070 11 6 8.0228 6.1989 -0.0773 12 1 7.2044 6.8870 -0.2295 13 6 9.3268 6.6717 -0.0269 14 7 10.3242 5.8331 0.1592 15 14 9.6662 8.4983 -0.2215 16 1 9.6413 9.1514 1.1119 17 1 11.0018 8.6902 -0.8418 18 1 8.6255 9.1054 -1.0896 19 7 1.6525 2.0974 -1.2518 20 6 0.4352 2.6644 -1.3669 21 8 -0.3417 2.6320 -0.4318 22 6 0.0455 3.3239 -2.6260 23 6 0.7972 3.4509 -3.7573 24 8 0.0771 4.1097 -4.6704 25 6 -1.1300 4.4369 -4.1834 26 6 -1.2320 3.9878 -2.9231 27 6 -2.4145 4.1347 -2.0005 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.9954 0.8310 -0.6659 34 1 3.8499 1.0375 1.0961 35 1 3.4414 3.5478 -0.1351 36 1 5.6145 4.8761 -1.0157 37 1 5.4681 5.0907 0.7453 38 1 11.2355 6.1635 0.1941 39 1 2.2720 2.1231 -1.9977 40 1 1.8021 3.0793 -3.8932 41 1 -1.8968 4.9755 -4.7202 42 1 -2.3182 5.0590 -1.4308 43 1 -3.3323 4.1638 -2.5878 44 1 -2.4483 3.2875 -1.3154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721451593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:03 Heat of formation + Delta-G solvation = -96.972362 kcal Electronic energy + Delta-G solvation = -26614.206253 eV Core-core repulsion = 22658.125640 eV Total energy + Delta-G solvation = -3956.080614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.49852 -41.14501 -40.32127 -37.58290 -35.01076 -34.77144 -34.57907 -33.67487 -31.58773 -31.11889 -28.95004 -28.12422 -27.64043 -25.00171 -24.21679 -22.21619 -21.62207 -21.28669 -21.15089 -19.86611 -19.00532 -17.84992 -17.61142 -17.30440 -17.16588 -16.87651 -16.64717 -16.42579 -16.23715 -15.80836 -15.60669 -14.87200 -14.67448 -14.59590 -14.44509 -14.25977 -14.19992 -13.95746 -13.89655 -13.48259 -13.39595 -13.16239 -13.02586 -12.88576 -12.64297 -12.51811 -12.43172 -12.16228 -11.80611 -11.72065 -11.14308 -10.99692 -10.98374 -10.53733 -10.27393 -10.17162 -10.08122 -9.59952 -8.65704 -8.34647 -6.12100 0.38259 1.09454 1.26983 1.42334 1.46975 1.57209 1.60503 1.98855 2.12855 2.25941 2.29462 2.36329 2.99661 3.31970 3.52156 3.64027 3.67695 3.91352 4.02491 4.07571 4.12870 4.29012 4.35651 4.40106 4.50985 4.51626 4.53874 4.67968 4.79674 4.81548 4.92839 4.97201 5.04725 5.06604 5.10144 5.16000 5.36030 5.42247 5.42740 5.49686 5.52906 6.02059 6.19981 6.42843 6.50389 7.07095 7.20400 7.21913 8.74405 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011630 B = 0.002497 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.927147 B =11212.481195 C =12998.490465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.149 3.851 4 H 0.086 0.914 5 C 0.116 3.884 6 N -0.713 5.713 7 C 0.537 3.463 8 O -0.560 6.560 9 C -0.132 4.132 10 S -0.147 6.147 11 C -0.547 4.547 12 H 0.081 0.919 13 C 0.014 3.986 14 N -0.910 5.910 15 Si 0.997 3.003 16 H -0.269 1.269 17 H -0.277 1.277 18 H -0.258 1.258 19 N -0.713 5.713 20 C 0.590 3.410 21 O -0.558 6.558 22 C -0.266 4.266 23 C 0.039 3.961 24 O -0.178 6.178 25 C -0.038 4.038 26 C -0.163 4.163 27 C -0.081 4.081 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.412 0.588 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.271 0.729 39 H 0.410 0.590 40 H 0.242 0.758 41 H 0.239 0.761 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.940 -6.449 -8.819 29.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.044 3.956 4 H 0.104 0.896 5 C -0.008 4.008 6 N -0.368 5.368 7 C 0.323 3.677 8 O -0.438 6.438 9 C -0.283 4.283 10 S 0.081 5.919 11 C -0.694 4.694 12 H 0.100 0.900 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.818 3.182 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.182 1.182 19 N -0.366 5.366 20 C 0.380 3.620 21 O -0.438 6.438 22 C -0.270 4.270 23 C -0.032 4.032 24 O -0.072 6.072 25 C -0.104 4.104 26 C -0.165 4.165 27 C -0.138 4.138 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.248 0.752 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.080 0.920 39 H 0.247 0.753 40 H 0.258 0.742 41 H 0.255 0.745 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -25.957 -7.967 -8.112 28.338 hybrid contribution -0.347 2.174 -0.250 2.216 sum -26.304 -5.793 -8.362 28.202 Atomic orbital electron populations 1.21701 0.95402 1.00798 1.01582 1.21870 0.96251 0.94473 1.04046 1.21181 0.92154 0.94938 0.87355 0.89574 1.21716 0.92176 0.83148 1.03741 1.45723 1.06040 1.10485 1.74510 1.19963 0.82641 0.89700 0.75376 1.90707 1.56976 1.46939 1.49160 1.23383 1.01104 0.97200 1.06633 1.85534 0.99263 1.11868 1.95277 1.23196 0.96100 0.92722 1.57414 0.90049 1.26098 0.94770 1.04310 0.93896 1.70174 1.00044 1.37096 1.47386 0.84981 0.77969 0.76373 0.78834 1.19479 1.20268 1.18197 1.45828 1.16126 1.57612 1.17059 1.17340 0.81446 0.77084 0.86178 1.90775 1.51914 1.60310 1.40774 1.21504 0.97806 1.11314 0.96422 1.25039 0.97921 0.94266 0.85947 1.83833 1.24990 1.57700 1.40696 1.24320 0.87061 1.04414 0.94570 1.21679 0.96287 1.02095 0.96434 1.20166 0.93760 1.02266 0.97614 0.92499 0.93610 0.93955 0.90258 0.89448 0.90115 0.90107 0.75200 0.87064 0.87742 0.91990 0.75301 0.74223 0.74531 0.91584 0.89675 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.51 71.98 0.61 -1.74 16 2 C -0.13 -1.74 5.61 30.59 0.17 -1.56 16 3 C 0.15 2.25 2.42 44.99 0.11 2.36 16 4 H 0.09 1.59 7.58 -2.39 -0.02 1.57 16 5 C 0.12 2.11 5.23 86.38 0.45 2.56 16 6 N -0.71 -15.87 5.39 -463.05 -2.50 -18.37 16 7 C 0.54 18.29 7.85 87.65 0.69 18.98 16 8 O -0.56 -24.17 15.86 -3.04 -0.05 -24.22 16 9 C -0.13 -5.00 6.16 71.23 0.44 -4.56 16 10 S -0.15 -7.94 20.57 -56.49 -1.16 -9.10 16 11 C -0.55 -30.74 9.50 67.95 0.65 -30.09 16 12 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 13 C 0.01 0.79 5.49 84.86 0.47 1.26 16 14 N -0.91 -55.32 13.22 21.65 0.29 -55.04 16 15 Si 1.00 43.14 29.55 68.60 2.03 45.17 16 16 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 17 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 19 N -0.71 -9.82 4.46 -445.84 -1.99 -11.81 16 20 C 0.59 11.21 6.38 86.65 0.55 11.76 16 21 O -0.56 -14.11 12.54 -4.08 -0.05 -14.16 16 22 C -0.27 -4.52 6.31 -18.99 -0.12 -4.64 16 23 C 0.04 0.46 11.61 67.39 0.78 1.25 16 24 O -0.18 -2.43 10.52 4.46 0.05 -2.38 16 25 C -0.04 -0.46 11.96 66.89 0.80 0.34 16 26 C -0.16 -2.71 6.37 -18.49 -0.12 -2.83 16 27 C -0.08 -1.27 10.00 71.24 0.71 -0.56 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 29 H 0.04 0.92 7.84 -2.39 -0.02 0.90 16 30 H 0.04 0.85 5.64 -2.38 -0.01 0.83 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.41 7.40 8.13 -92.71 -0.75 6.65 16 36 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 37 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 38 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.41 3.87 7.57 -92.71 -0.70 3.17 16 40 H 0.24 0.98 7.47 -2.91 -0.02 0.96 16 41 H 0.24 1.02 8.06 -2.91 -0.02 0.99 16 42 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 43 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 44 H 0.06 1.20 6.91 -2.39 -0.02 1.18 16 Total: -1.00 -81.09 385.46 2.39 -78.70 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -0.42 Total: 18.70 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 6.19 Total: -7.50 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -4.20 Total: -85.21 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -0.05 Total: -40.76 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -7.94 SS G_CDS: -1.16 Total: -9.10 kcal Total: -81.09 2.39 -78.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721451593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.272 kcal (2) G-P(sol) polarization free energy of solvation -81.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds