Wall clock time and date at job start Sat Apr 11 2020 05:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47397 * 2 1 4 4 C 1.53009 * 109.46690 * 119.99361 * 2 1 3 5 5 H 1.08997 * 109.46604 * 184.99789 * 4 2 1 6 6 C 1.52999 * 109.46984 * 305.00164 * 4 2 1 7 7 N 1.46506 * 109.46684 * 175.00142 * 6 4 2 8 8 C 1.34777 * 119.99873 * 180.02562 * 7 6 4 9 9 O 1.21695 * 119.99811 * 359.97438 * 8 7 6 10 10 C 1.46656 * 119.99952 * 179.97438 * 8 7 6 11 11 C 1.36550 * 125.98669 * 179.71495 * 10 8 7 12 12 C 1.40365 * 106.70700 * 179.84963 * 11 10 8 13 13 C 1.35135 * 107.11104 * 0.40845 * 12 11 10 14 14 O 1.33926 * 108.77013 * 359.74763 * 13 12 11 15 15 N 1.46497 * 109.46622 * 65.00033 * 4 2 1 16 16 C 1.34779 * 120.00134 * 85.00058 * 15 4 2 17 17 O 1.21278 * 119.99829 * 359.97438 * 16 15 4 18 18 C 1.50700 * 120.00123 * 179.97438 * 16 15 4 19 19 S 1.80995 * 109.47185 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00244 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99623 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00029 * 180.02562 * 20 19 18 23 23 N 1.31628 * 119.99972 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99761 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47029 * 90.00079 * 24 22 20 26 26 H 1.48495 * 109.47128 * 209.99855 * 24 22 20 27 27 H 1.48503 * 109.47245 * 329.99969 * 24 22 20 28 28 H 1.09005 * 109.47239 * 300.00859 * 1 2 3 29 29 H 1.09007 * 109.46708 * 60.00244 * 1 2 3 30 30 H 1.08996 * 109.47271 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47127 * 239.99294 * 2 1 3 32 32 H 1.08998 * 109.47491 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.46527 * 299.99836 * 3 2 1 34 34 H 1.08995 * 109.47123 * 59.99249 * 3 2 1 35 35 H 1.09000 * 109.47486 * 55.00077 * 6 4 2 36 36 H 1.09001 * 109.47362 * 294.99354 * 6 4 2 37 37 H 0.96995 * 120.00050 * 359.72237 * 7 6 4 38 38 H 1.07999 * 126.64202 * 359.95539 * 11 10 8 39 39 H 1.07995 * 126.44573 * 180.15183 * 12 11 10 40 40 H 1.07998 * 125.61090 * 179.78055 * 13 12 11 41 41 H 0.97001 * 120.00330 * 264.99061 * 15 4 2 42 42 H 1.08995 * 109.47336 * 300.00119 * 18 16 15 43 43 H 1.09006 * 109.46803 * 60.00223 * 18 16 15 44 44 H 0.96998 * 119.99446 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 3.1262 -0.6443 1.2953 6 6 1.4298 -0.0760 2.4954 7 7 1.8225 -0.8394 3.6825 8 6 1.3984 -0.4538 4.9024 9 8 0.6897 0.5287 5.0176 10 6 1.7911 -1.2183 6.0907 11 6 1.4381 -0.9358 7.3792 12 6 2.0282 -1.9224 8.1847 13 6 2.7143 -2.7480 7.3638 14 8 2.5691 -2.3204 6.1030 15 7 1.6523 -2.1327 1.1908 16 6 2.4221 -3.0159 0.5244 17 8 3.4354 -2.6419 -0.0270 18 6 2.0236 -4.4680 0.4646 19 16 3.2504 -5.3913 -0.4938 20 6 2.5549 -7.0078 -0.4047 21 1 1.6327 -7.1699 0.1335 22 6 3.1923 -8.0727 -1.0262 23 7 4.3160 -7.8749 -1.6826 24 14 2.4553 -9.7865 -0.9311 25 1 1.5327 -9.9928 -2.0764 26 1 3.5426 -10.7965 -0.9833 27 1 1.7046 -9.9326 0.3418 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 0.3433 -0.0733 2.4081 36 1 1.7895 0.9488 2.5871 37 1 2.3841 -1.6248 3.5902 38 1 0.8227 -0.1138 7.7135 39 1 1.9519 -2.0038 9.2589 40 1 3.2853 -3.6108 7.6736 41 1 0.8417 -2.4318 1.6316 42 1 1.9730 -4.8729 1.4753 43 1 1.0473 -4.5575 -0.0120 44 1 4.7611 -8.6191 -2.1172 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738307196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:06 Heat of formation + Delta-G solvation = -67.936519 kcal Electronic energy + Delta-G solvation = -26825.550528 eV Core-core repulsion = 22870.729003 eV Total energy + Delta-G solvation = -3954.821525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.98149 -40.26420 -39.26691 -37.22896 -34.62137 -33.38460 -33.17646 -32.45785 -30.62153 -29.56434 -27.83430 -27.33140 -25.52905 -24.43795 -22.94301 -22.04652 -20.92806 -20.54416 -19.63738 -18.75760 -17.88607 -16.92526 -16.72871 -16.65951 -16.45297 -15.75377 -15.13839 -15.06244 -14.83191 -14.73282 -14.11230 -14.07740 -14.01867 -13.37032 -13.34895 -13.31913 -13.25305 -13.04429 -12.94945 -12.49402 -12.16044 -12.12861 -11.92489 -11.37344 -11.12959 -11.08973 -11.05220 -10.80019 -10.70270 -10.58814 -10.39926 -9.84795 -9.56678 -9.42209 -9.10208 -8.99526 -8.98442 -8.27546 -6.53403 -6.24771 -3.95438 0.74013 2.02723 2.35113 2.83439 2.87360 2.96967 3.03738 3.20113 3.25608 3.29255 3.64685 4.17510 4.30118 4.38471 4.56476 4.66081 4.72804 4.82740 4.96510 5.03373 5.09502 5.10643 5.25199 5.31089 5.43314 5.47833 5.49121 5.55233 5.60063 5.69614 5.71482 5.81127 5.83915 5.90985 5.96986 6.01333 6.09535 6.13501 6.22173 6.48509 6.53911 7.11278 7.56530 7.60222 7.73084 8.32187 8.52539 9.20807 10.82612 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008945 B = 0.003014 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3129.341372 B = 9287.376500 C =11799.631169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C -0.149 4.149 4 C 0.141 3.859 5 H 0.097 0.903 6 C 0.107 3.893 7 N -0.717 5.717 8 C 0.604 3.396 9 O -0.523 6.523 10 C -0.083 4.083 11 C -0.119 4.119 12 C -0.229 4.229 13 C 0.001 3.999 14 O -0.161 6.161 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.513 6.513 18 C -0.154 4.154 19 S -0.058 6.058 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.410 0.590 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.212 0.788 41 H 0.398 0.602 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.046 15.770 15.374 23.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.125 4.125 3 C -0.207 4.207 4 C 0.035 3.965 5 H 0.115 0.885 6 C -0.017 4.017 7 N -0.369 5.369 8 C 0.391 3.609 9 O -0.401 6.401 10 C -0.135 4.135 11 C -0.140 4.140 12 C -0.248 4.248 13 C -0.070 4.070 14 O -0.056 6.056 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.386 6.386 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.246 0.754 38 H 0.178 0.822 39 H 0.175 0.825 40 H 0.228 0.772 41 H 0.233 0.767 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.571 16.901 14.113 22.712 hybrid contribution -1.795 -2.150 1.108 3.012 sum -7.366 14.751 15.221 22.439 Atomic orbital electron populations 1.21931 0.94962 1.02107 1.01881 1.21465 0.96244 0.96388 0.98384 1.21875 1.01483 0.95277 1.02025 1.21188 1.00999 0.81047 0.93277 0.88519 1.21950 1.01100 0.96044 0.82566 1.45921 1.53035 1.32064 1.05847 1.16525 0.79985 0.83223 0.81186 1.90884 1.37716 1.26011 1.85513 1.22044 1.03193 0.91954 0.96333 1.21982 1.00705 1.00417 0.90885 1.21884 1.03763 0.97678 1.01497 1.24511 1.01499 1.00636 0.80317 1.84106 1.54524 1.36362 1.30588 1.46125 1.28314 1.07496 1.57174 1.20328 0.83005 0.87331 0.77318 1.90711 1.24825 1.79704 1.43396 1.23541 1.06519 0.94437 1.06012 1.85388 1.28864 1.02619 1.66307 1.22864 1.12266 0.93406 1.39900 0.90954 1.24987 0.94768 0.99278 0.94508 1.70014 1.15973 1.32315 1.31962 0.86175 0.78697 0.82033 0.78645 1.20260 1.20740 1.19693 0.92385 0.92441 0.92366 0.89578 0.92225 0.92229 0.92465 0.89854 0.89412 0.75363 0.82249 0.82524 0.77157 0.76743 0.89261 0.89232 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.60 37.16 0.32 -1.01 16 2 C -0.10 -1.06 2.87 -90.61 -0.26 -1.32 16 3 C -0.15 -1.27 8.95 37.16 0.33 -0.93 16 4 C 0.14 1.47 1.90 -67.93 -0.13 1.34 16 5 H 0.10 1.18 7.58 -51.93 -0.39 0.79 16 6 C 0.11 0.98 4.53 -4.04 -0.02 0.96 16 7 N -0.72 -7.16 5.39 -61.62 -0.33 -7.49 16 8 C 0.60 7.03 7.79 -12.86 -0.10 6.93 16 9 O -0.52 -7.32 16.86 5.19 0.09 -7.23 16 10 C -0.08 -0.90 7.13 -36.80 -0.26 -1.16 16 11 C -0.12 -1.13 10.62 -39.39 -0.42 -1.55 16 12 C -0.23 -1.72 10.88 -39.89 -0.43 -2.16 16 13 C 0.00 0.00 12.08 29.63 0.36 0.36 16 14 O -0.16 -1.63 10.40 5.02 0.05 -1.58 16 15 N -0.74 -8.73 3.97 -53.80 -0.21 -8.94 16 16 C 0.53 9.11 7.81 -10.98 -0.09 9.03 16 17 O -0.51 -10.76 15.52 5.56 0.09 -10.67 16 18 C -0.15 -2.96 6.16 36.01 0.22 -2.73 16 19 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 20 C -0.54 -14.99 9.50 30.94 0.29 -14.69 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.80 13.22 55.49 0.73 -25.06 16 24 Si 0.92 21.11 29.55 -169.99 -5.02 16.09 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H 0.06 0.45 6.23 -51.93 -0.32 0.13 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.54 7.75 -51.93 -0.40 0.14 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.06 0.42 6.68 -51.93 -0.35 0.08 16 35 H 0.08 0.74 6.06 -51.93 -0.31 0.42 16 36 H 0.09 0.78 6.81 -51.93 -0.35 0.43 16 37 H 0.41 4.07 7.89 -40.82 -0.32 3.75 16 38 H 0.16 1.36 8.06 -52.49 -0.42 0.93 16 39 H 0.16 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.21 0.79 8.06 -52.49 -0.42 0.36 16 41 H 0.40 3.90 8.60 -40.82 -0.35 3.55 16 42 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 43 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 387.85 15.07 5.84 5.84 Total: -1.00 -35.07 387.85 -7.41 -42.49 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -6.16 Total: 5.26 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -0.28 Total: -4.96 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.19 Total: -41.50 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: 0.23 Total: -19.47 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.07 -7.41 -42.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738307196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.451 kcal (2) G-P(sol) polarization free energy of solvation -35.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds