Wall clock time and date at job start Sat Apr 11 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47397 * 2 1 4 4 C 1.53009 * 109.46690 * 119.99361 * 2 1 3 5 5 H 1.08997 * 109.46604 * 184.99789 * 4 2 1 6 6 C 1.52999 * 109.46984 * 305.00164 * 4 2 1 7 7 N 1.46506 * 109.46684 * 175.00142 * 6 4 2 8 8 C 1.34777 * 119.99873 * 180.02562 * 7 6 4 9 9 O 1.21695 * 119.99811 * 359.97438 * 8 7 6 10 10 C 1.46656 * 119.99952 * 179.97438 * 8 7 6 11 11 C 1.36550 * 125.98669 * 179.71495 * 10 8 7 12 12 C 1.40365 * 106.70700 * 179.84963 * 11 10 8 13 13 C 1.35135 * 107.11104 * 0.40845 * 12 11 10 14 14 O 1.33926 * 108.77013 * 359.74763 * 13 12 11 15 15 N 1.46497 * 109.46622 * 65.00033 * 4 2 1 16 16 C 1.34779 * 120.00134 * 85.00058 * 15 4 2 17 17 O 1.21278 * 119.99829 * 359.97438 * 16 15 4 18 18 C 1.50700 * 120.00123 * 179.97438 * 16 15 4 19 19 S 1.80995 * 109.47185 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00244 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99623 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00029 * 180.02562 * 20 19 18 23 23 N 1.31628 * 119.99972 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99761 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47029 * 90.00079 * 24 22 20 26 26 H 1.48495 * 109.47128 * 209.99855 * 24 22 20 27 27 H 1.48503 * 109.47245 * 329.99969 * 24 22 20 28 28 H 1.09005 * 109.47239 * 300.00859 * 1 2 3 29 29 H 1.09007 * 109.46708 * 60.00244 * 1 2 3 30 30 H 1.08996 * 109.47271 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47127 * 239.99294 * 2 1 3 32 32 H 1.08998 * 109.47491 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.46527 * 299.99836 * 3 2 1 34 34 H 1.08995 * 109.47123 * 59.99249 * 3 2 1 35 35 H 1.09000 * 109.47486 * 55.00077 * 6 4 2 36 36 H 1.09001 * 109.47362 * 294.99354 * 6 4 2 37 37 H 0.96995 * 120.00050 * 359.72237 * 7 6 4 38 38 H 1.07999 * 126.64202 * 359.95539 * 11 10 8 39 39 H 1.07995 * 126.44573 * 180.15183 * 12 11 10 40 40 H 1.07998 * 125.61090 * 179.78055 * 13 12 11 41 41 H 0.97001 * 120.00330 * 264.99061 * 15 4 2 42 42 H 1.08995 * 109.47336 * 300.00119 * 18 16 15 43 43 H 1.09006 * 109.46803 * 60.00223 * 18 16 15 44 44 H 0.96998 * 119.99446 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 3.1262 -0.6443 1.2953 6 6 1.4298 -0.0760 2.4954 7 7 1.8225 -0.8394 3.6825 8 6 1.3984 -0.4538 4.9024 9 8 0.6897 0.5287 5.0176 10 6 1.7911 -1.2183 6.0907 11 6 1.4381 -0.9358 7.3792 12 6 2.0282 -1.9224 8.1847 13 6 2.7143 -2.7480 7.3638 14 8 2.5691 -2.3204 6.1030 15 7 1.6523 -2.1327 1.1908 16 6 2.4221 -3.0159 0.5244 17 8 3.4354 -2.6419 -0.0270 18 6 2.0236 -4.4680 0.4646 19 16 3.2504 -5.3913 -0.4938 20 6 2.5549 -7.0078 -0.4047 21 1 1.6327 -7.1699 0.1335 22 6 3.1923 -8.0727 -1.0262 23 7 4.3160 -7.8749 -1.6826 24 14 2.4553 -9.7865 -0.9311 25 1 1.5327 -9.9928 -2.0764 26 1 3.5426 -10.7965 -0.9833 27 1 1.7046 -9.9326 0.3418 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 0.3433 -0.0733 2.4081 36 1 1.7895 0.9488 2.5871 37 1 2.3841 -1.6248 3.5902 38 1 0.8227 -0.1138 7.7135 39 1 1.9519 -2.0038 9.2589 40 1 3.2853 -3.6108 7.6736 41 1 0.8417 -2.4318 1.6316 42 1 1.9730 -4.8729 1.4753 43 1 1.0473 -4.5575 -0.0120 44 1 4.7611 -8.6191 -2.1172 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738307196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:05 Heat of formation + Delta-G solvation = -92.903489 kcal Electronic energy + Delta-G solvation = -26826.633177 eV Core-core repulsion = 22870.729003 eV Total energy + Delta-G solvation = -3955.904174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.65219 -41.31117 -40.34905 -38.32688 -35.45666 -34.58706 -34.39192 -34.01708 -31.45346 -30.82313 -28.80669 -28.06115 -27.64254 -25.31187 -23.70887 -22.69646 -22.11777 -21.41542 -20.53207 -19.94123 -19.42468 -18.01008 -17.80433 -17.44175 -17.35806 -16.87695 -16.76137 -16.37453 -16.15443 -15.79736 -15.55063 -15.02266 -14.83153 -14.67817 -14.57049 -14.14285 -14.08202 -13.92973 -13.73487 -13.59105 -13.54727 -13.15917 -12.89663 -12.87153 -12.70871 -12.60520 -12.31221 -11.91700 -11.72919 -11.58686 -11.46723 -11.13962 -11.05724 -10.94319 -10.35122 -10.26413 -10.13799 -9.66157 -8.65022 -8.34382 -6.11626 0.00272 1.26936 1.41229 1.42327 1.46895 1.56877 1.59457 1.65869 2.05216 2.10537 2.25749 2.29621 2.99981 3.31966 3.46004 3.68889 3.84352 3.95230 3.95681 4.00761 4.11006 4.19703 4.27153 4.31004 4.50673 4.52637 4.61853 4.69596 4.80969 4.81369 4.89107 4.95077 5.00467 5.01741 5.11290 5.24580 5.31754 5.38661 5.42452 5.43537 5.51101 5.81511 6.20187 6.28972 6.44736 6.88116 7.07382 7.22007 8.74644 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008945 B = 0.003014 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3129.341372 B = 9287.376500 C =11799.631169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.102 4.102 3 C -0.146 4.146 4 C 0.146 3.854 5 H 0.080 0.920 6 C 0.115 3.885 7 N -0.712 5.712 8 C 0.605 3.395 9 O -0.553 6.553 10 C -0.114 4.114 11 C -0.122 4.122 12 C -0.233 4.233 13 C 0.006 3.994 14 O -0.176 6.176 15 N -0.710 5.710 16 C 0.540 3.460 17 O -0.557 6.557 18 C -0.132 4.132 19 S -0.146 6.146 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.015 3.985 23 N -0.911 5.911 24 Si 0.996 3.004 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.258 1.258 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.411 0.589 38 H 0.164 0.836 39 H 0.184 0.816 40 H 0.247 0.753 41 H 0.413 0.587 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.851 15.461 17.376 24.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.203 4.203 4 C 0.041 3.959 5 H 0.098 0.902 6 C -0.009 4.009 7 N -0.363 5.363 8 C 0.393 3.607 9 O -0.434 6.434 10 C -0.166 4.166 11 C -0.143 4.143 12 C -0.252 4.252 13 C -0.064 4.064 14 O -0.071 6.071 15 N -0.364 5.364 16 C 0.326 3.674 17 O -0.434 6.434 18 C -0.283 4.283 19 S 0.081 5.919 20 C -0.694 4.694 21 H 0.100 0.900 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.818 3.182 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.182 1.182 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.247 0.753 38 H 0.181 0.819 39 H 0.201 0.799 40 H 0.263 0.737 41 H 0.250 0.750 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.413 16.613 16.136 24.317 hybrid contribution -1.242 -1.966 0.588 2.399 sum -8.655 14.647 16.724 23.856 Atomic orbital electron populations 1.21915 0.93507 1.02122 1.02991 1.21396 0.97382 0.96972 0.96454 1.21858 1.01047 0.94222 1.03216 1.21230 1.00256 0.79896 0.94536 0.90187 1.21936 1.01545 0.96066 0.81303 1.45895 1.52662 1.31944 1.05761 1.16635 0.79526 0.82911 0.81664 1.90857 1.39209 1.27297 1.85995 1.21958 1.05079 0.93093 0.96451 1.22271 1.00282 1.00800 0.90931 1.22232 1.03266 0.96891 1.02772 1.25340 1.00681 1.01044 0.79321 1.84093 1.54679 1.36297 1.32057 1.45827 1.27734 1.07563 1.55281 1.19969 0.82840 0.87072 0.77512 1.90706 1.26901 1.80137 1.45663 1.23383 1.04489 0.94777 1.05630 1.85546 1.33136 1.04404 1.68767 1.23204 1.12524 0.93790 1.39928 0.90033 1.26091 0.95072 1.04025 0.93845 1.70176 1.17679 1.33754 1.33113 0.84986 0.77914 0.76010 0.79283 1.19441 1.20319 1.18183 0.90758 0.91894 0.92880 0.92746 0.92976 0.91489 0.90814 0.88740 0.88540 0.75291 0.81864 0.79894 0.73688 0.75002 0.87272 0.87497 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.60 71.98 0.62 -1.72 16 2 C -0.10 -1.99 2.87 -10.79 -0.03 -2.02 16 3 C -0.15 -2.32 8.95 71.98 0.64 -1.68 16 4 C 0.15 2.96 1.90 44.99 0.09 3.04 16 5 H 0.08 1.97 7.58 -2.39 -0.02 1.95 16 6 C 0.11 1.92 4.53 86.38 0.39 2.31 16 7 N -0.71 -13.50 5.39 -467.09 -2.52 -16.02 16 8 C 0.60 13.66 7.79 86.44 0.67 14.33 16 9 O -0.55 -15.11 16.86 -4.33 -0.07 -15.18 16 10 C -0.11 -2.38 7.13 24.07 0.17 -2.21 16 11 C -0.12 -2.18 10.62 22.39 0.24 -1.94 16 12 C -0.23 -2.96 10.88 22.07 0.24 -2.72 16 13 C 0.01 0.07 12.08 67.10 0.81 0.88 16 14 O -0.18 -3.34 10.40 -4.94 -0.05 -3.39 16 15 N -0.71 -16.12 3.97 -442.53 -1.75 -17.88 16 16 C 0.54 18.40 7.81 87.66 0.68 19.08 16 17 O -0.56 -24.07 15.52 -3.02 -0.05 -24.12 16 18 C -0.13 -4.96 6.16 71.24 0.44 -4.52 16 19 S -0.15 -7.87 20.57 -56.49 -1.16 -9.03 16 20 C -0.55 -30.66 9.50 67.95 0.65 -30.01 16 21 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 22 C 0.01 0.82 5.49 84.86 0.47 1.28 16 23 N -0.91 -55.27 13.22 21.65 0.29 -54.98 16 24 Si 1.00 42.97 29.55 68.60 2.03 45.00 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 28 H 0.07 0.95 6.23 -2.38 -0.01 0.93 16 29 H 0.06 0.94 8.14 -2.38 -0.02 0.93 16 30 H 0.05 0.89 7.75 -2.39 -0.02 0.87 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.07 0.94 6.68 -2.39 -0.02 0.92 16 35 H 0.09 1.44 6.06 -2.39 -0.01 1.43 16 36 H 0.10 1.54 6.81 -2.39 -0.02 1.52 16 37 H 0.41 7.80 7.89 -92.71 -0.73 7.07 16 38 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 39 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 40 H 0.25 0.99 8.06 -2.91 -0.02 0.97 16 41 H 0.41 7.24 8.60 -92.71 -0.80 6.44 16 42 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 43 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 44 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -78.79 387.85 2.30 -76.49 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -0.49 Total: 24.99 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 6.08 Total: -5.90 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -3.98 Total: -88.88 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -0.17 Total: -42.69 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: -7.87 SS G_CDS: -1.16 Total: -9.03 kcal Total: -78.79 2.30 -76.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738307196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.413 kcal (2) G-P(sol) polarization free energy of solvation -78.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds