Wall clock time and date at job start Sat Apr 11 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47122 * 2 1 4 4 C 1.47203 * 109.46752 * 119.99916 * 2 1 3 5 5 C 2.64604 * 109.47035 * 119.99762 * 2 1 3 6 6 C 4.07804 * 109.47018 * 119.99805 * 2 1 3 7 7 O 1.21611 * 120.00101 * 323.81990 * 6 5 4 8 8 N 1.34776 * 119.99920 * 143.81201 * 6 5 4 9 9 C 1.46495 * 119.99803 * 180.02562 * 8 6 5 10 10 H 1.09000 * 110.78470 * 36.79251 * 9 8 6 11 11 C 1.54325 * 110.72250 * 273.54657 * 9 8 6 12 12 N 1.47018 * 107.40412 * 219.52320 * 11 9 8 13 13 C 1.34777 * 125.64981 * 178.82520 * 12 11 9 14 14 O 1.21280 * 119.99909 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.00100 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.46973 * 180.02562 * 15 13 12 17 17 C 1.76202 * 99.99954 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00069 * 359.97438 * 17 16 15 19 19 C 1.38797 * 119.99747 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00349 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99660 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47035 * 59.99918 * 21 19 17 23 23 H 1.48504 * 109.47165 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47082 * 300.00000 * 21 19 17 25 25 C 1.47426 * 108.70517 * 358.86539 * 12 11 9 26 26 C 1.54914 * 104.82992 * 24.12623 * 25 12 11 27 27 H 1.09000 * 111.00165 * 204.88167 * 26 25 12 28 28 O 1.42894 * 111.00242 * 81.06951 * 26 25 12 29 29 H 1.09000 * 109.47222 * 299.99878 * 1 2 3 30 30 H 1.08999 * 109.47388 * 60.00006 * 1 2 3 31 31 H 1.08998 * 109.47063 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46907 * 239.99896 * 2 1 3 33 33 H 1.08997 * 109.47193 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46984 * 300.00242 * 3 2 1 35 35 H 1.09000 * 109.46972 * 59.99969 * 3 2 1 36 36 H 0.96997 * 119.99763 * 0.02562 * 8 6 5 37 37 H 1.09002 * 109.88192 * 100.02760 * 11 9 8 38 38 H 1.09000 * 109.88128 * 339.01612 * 11 9 8 39 39 H 1.08996 * 109.47275 * 300.00392 * 15 13 12 40 40 H 1.09002 * 109.46941 * 60.00490 * 15 13 12 41 41 H 0.97001 * 119.99833 * 180.02562 * 20 19 17 42 42 H 1.08999 * 110.36956 * 142.96999 * 25 12 11 43 43 H 1.09003 * 110.36599 * 265.28903 * 25 12 11 44 44 H 0.96703 * 114.00602 * 61.45224 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6939 1.2019 5 6 2.4120 -1.2473 2.1605 6 6 2.8893 -1.9223 3.3298 7 8 2.1048 -2.2852 4.1852 8 7 4.2079 -2.1555 3.4821 9 6 4.6961 -2.8466 4.6780 10 1 3.9981 -3.6246 4.9872 11 6 4.9407 -1.8447 5.8261 12 7 6.1720 -2.2577 6.5153 13 6 6.7363 -1.6240 7.5624 14 8 6.2229 -0.6219 8.0132 15 6 8.0046 -2.1613 8.1738 16 16 8.5078 -1.0991 9.5503 17 6 9.9717 -1.9352 10.0627 18 1 10.2931 -2.8273 9.5458 19 6 10.7112 -1.4480 11.1314 20 7 10.3193 -0.3610 11.7619 21 14 12.2628 -2.3349 11.6751 22 1 13.2338 -2.3673 10.5520 23 1 12.8643 -1.6183 12.8284 24 1 11.9240 -3.7238 12.0768 25 6 6.6876 -3.4791 5.8707 26 6 6.1102 -3.4432 4.4337 27 1 6.0448 -4.4469 4.0137 28 8 6.8855 -2.5880 3.5914 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 4.8337 -1.8658 2.8000 37 1 4.1017 -1.8658 6.5216 38 1 5.0616 -0.8398 5.4216 39 1 7.8310 -3.1729 8.5406 40 1 8.7923 -2.1781 7.4206 41 1 10.8363 -0.0203 12.5085 42 1 7.7771 -3.4621 5.8423 43 1 6.3349 -4.3648 6.3992 44 1 7.8055 -2.8670 3.4875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001739621338.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:10 Heat of formation + Delta-G solvation = -98.083571 kcal Electronic energy + Delta-G solvation = -25913.715931 eV Core-core repulsion = 21957.587131 eV Total energy + Delta-G solvation = -3956.128800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.64510 -40.56163 -39.07405 -37.35203 -36.30794 -35.52640 -34.58712 -33.16562 -31.88344 -30.24123 -29.18472 -28.08055 -27.66791 -25.71330 -24.29951 -22.70023 -21.98222 -20.90573 -20.05334 -19.52349 -18.63609 -18.20708 -17.38840 -17.18818 -16.90820 -16.87805 -16.42496 -16.26027 -15.87659 -15.65110 -15.58567 -15.27787 -14.93988 -14.53015 -14.43831 -14.22379 -14.01790 -13.50106 -13.42840 -13.16074 -13.13342 -12.95688 -12.86207 -12.71597 -12.63097 -12.54627 -12.39505 -12.29609 -11.77519 -11.69310 -11.43081 -11.35807 -11.24497 -11.12650 -10.91467 -10.41545 -10.28626 -9.78289 -8.69558 -8.34308 -6.14010 0.39217 1.11438 1.23755 1.43752 1.44842 1.50490 1.54572 1.79987 2.10520 2.27171 2.35508 2.87285 2.99940 3.12442 3.23452 3.34600 3.48191 3.82271 3.89232 3.99649 4.03629 4.10367 4.15027 4.22321 4.40280 4.43695 4.49196 4.52867 4.61489 4.63658 4.76477 4.83417 4.92212 4.92710 5.08449 5.09979 5.21145 5.31493 5.32900 5.41290 6.14161 6.19366 6.25049 6.29177 6.78603 6.94800 7.04294 7.06463 8.74772 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024111 B = 0.001843 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.003880 B =15190.852358 C =15513.720645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.004 3.996 3 C -0.147 4.147 4 C -0.039 4.039 5 C -0.276 4.276 6 C 0.635 3.365 7 O -0.565 6.565 8 N -0.685 5.685 9 C 0.149 3.851 10 H 0.127 0.873 11 C 0.099 3.901 12 N -0.609 5.609 13 C 0.544 3.456 14 O -0.571 6.571 15 C -0.115 4.115 16 S -0.158 6.158 17 C -0.545 4.545 18 H 0.087 0.913 19 C 0.012 3.988 20 N -0.913 5.913 21 Si 1.001 2.999 22 H -0.260 1.260 23 H -0.281 1.281 24 H -0.261 1.261 25 C 0.057 3.943 26 C 0.107 3.893 27 H 0.136 0.864 28 O -0.570 6.570 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.130 0.870 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.424 0.576 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.271 0.729 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.775 -8.641 -30.566 33.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.014 4.014 3 C -0.204 4.204 4 C -0.041 4.041 5 C -0.279 4.279 6 C 0.423 3.577 7 O -0.445 6.445 8 N -0.336 5.336 9 C 0.043 3.957 10 H 0.145 0.855 11 C -0.025 4.025 12 N -0.344 5.344 13 C 0.333 3.667 14 O -0.450 6.450 15 C -0.266 4.266 16 S 0.069 5.931 17 C -0.693 4.693 18 H 0.105 0.895 19 C -0.192 4.192 20 N -0.549 5.549 21 Si 0.822 3.178 22 H -0.184 1.184 23 H -0.206 1.206 24 H -0.185 1.185 25 C -0.065 4.065 26 C 0.046 3.954 27 H 0.154 0.846 28 O -0.380 6.380 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.148 0.852 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.068 0.932 36 H 0.263 0.737 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.080 0.920 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -13.542 -6.958 -29.140 32.878 hybrid contribution 1.969 -1.135 0.429 2.313 sum -11.572 -8.093 -28.711 31.996 Atomic orbital electron populations 1.21887 0.92122 1.02912 1.03578 1.18890 0.96848 0.95648 0.89978 1.21875 1.01793 0.93127 1.03592 1.23515 0.95205 0.91564 0.93833 1.20552 1.05198 1.05019 0.97136 1.14928 0.82610 0.77504 0.82670 1.90852 1.56779 1.53089 1.43817 1.45435 1.06333 1.58819 1.23053 1.22198 0.96106 0.93758 0.83659 0.85502 1.22262 0.86719 0.98986 0.94567 1.48214 1.26064 1.28869 1.31294 1.19960 0.85140 0.82732 0.78892 1.90701 1.64771 1.27116 1.62400 1.23273 0.97208 1.04202 1.01902 1.85734 1.32389 1.38507 1.36438 1.23164 1.10630 1.15078 1.20388 0.89506 1.26170 1.02036 0.95805 0.95219 1.70192 1.40553 1.22710 1.21455 0.84973 0.76640 0.78238 0.77940 1.18420 1.20614 1.18533 1.23599 1.02026 0.87180 0.93679 1.23270 0.87930 0.95419 0.88734 0.84648 1.86330 1.28406 1.54843 1.68465 0.93147 0.88698 0.92242 0.85241 0.91968 0.88698 0.93175 0.73747 0.92803 0.93025 0.87011 0.86856 0.92024 0.87522 0.87422 0.73909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.15 71.98 0.66 -0.45 16 2 C 0.00 0.03 3.30 -12.60 -0.04 -0.01 16 3 C -0.15 -1.07 9.15 71.98 0.66 -0.41 16 4 C -0.04 -0.64 12.56 31.13 0.39 -0.25 16 5 C -0.28 -6.02 13.61 30.02 0.41 -5.61 16 6 C 0.63 15.77 7.65 85.49 0.65 16.42 16 7 O -0.57 -18.34 16.82 -4.07 -0.07 -18.41 16 8 N -0.68 -12.94 5.08 -444.07 -2.26 -15.19 16 9 C 0.15 2.72 3.13 46.27 0.14 2.87 16 10 H 0.13 2.21 7.70 -2.39 -0.02 2.19 16 11 C 0.10 2.77 6.61 86.73 0.57 3.34 16 12 N -0.61 -17.23 3.33 -811.78 -2.70 -19.93 16 13 C 0.54 21.67 7.87 87.66 0.69 22.36 16 14 O -0.57 -29.06 16.19 -3.03 -0.05 -29.10 16 15 C -0.11 -4.58 5.16 71.24 0.37 -4.21 16 16 S -0.16 -8.89 20.57 -56.49 -1.16 -10.05 16 17 C -0.54 -30.86 9.50 67.95 0.65 -30.21 16 18 H 0.09 4.47 7.80 -2.91 -0.02 4.45 16 19 C 0.01 0.70 5.49 84.86 0.47 1.17 16 20 N -0.91 -56.37 13.22 21.65 0.29 -56.09 16 21 Si 1.00 43.05 29.55 68.60 2.03 45.08 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 25 C 0.06 0.86 6.43 86.86 0.56 1.42 16 26 C 0.11 1.12 4.30 32.08 0.14 1.26 16 27 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 28 O -0.57 -6.25 12.23 -148.98 -1.82 -8.07 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.42 6.58 7.54 -92.71 -0.70 5.88 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.05 1.66 8.03 -2.39 -0.02 1.64 16 39 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 40 H 0.11 3.94 7.85 -2.39 -0.02 3.92 16 41 H 0.27 15.57 8.31 -92.71 -0.77 14.79 16 42 H 0.11 1.31 7.48 -2.39 -0.02 1.30 16 43 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.41 1.21 9.11 -74.06 -0.67 0.54 16 Total: -1.00 -90.32 395.58 0.23 -90.09 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -0.33 Total: 14.00 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 6.31 Total: 7.68 kcal Atomic # 7 Polarization: -86.54 SS G_CDS: -4.67 Total: -91.21 kcal Atomic # 8 Polarization: -53.64 SS G_CDS: -1.94 Total: -55.58 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.16 Total: -10.05 kcal Total: -90.32 0.23 -90.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001739621338.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.995 kcal (2) G-P(sol) polarization free energy of solvation -90.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds