Wall clock time and date at job start Sat Apr 11 2020 05:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46980 * 2 1 4 4 H 1.09000 * 109.47145 * 55.00233 * 3 2 1 5 5 C 1.53006 * 109.47102 * 175.00470 * 3 2 1 6 6 N 1.46504 * 109.46883 * 175.00371 * 5 3 2 7 7 C 1.34775 * 119.99531 * 179.97438 * 6 5 3 8 8 O 1.21612 * 120.00327 * 0.02562 * 7 6 5 9 9 C 1.47378 * 119.99868 * 179.97438 * 7 6 5 10 10 C 1.36418 * 127.19230 * 359.69099 * 9 7 6 11 11 O 1.33649 * 108.39371 * 179.88903 * 10 9 7 12 12 C 1.34215 * 110.91441 * 0.38695 * 11 10 9 13 13 C 1.34174 * 109.12030 * 359.76270 * 12 11 10 14 14 C 1.50699 * 127.02225 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.47308 * 295.00087 * 3 2 1 16 16 C 1.34783 * 120.00018 * 85.00189 * 15 3 2 17 17 O 1.21285 * 119.99349 * 359.97438 * 16 15 3 18 18 C 1.50698 * 120.00276 * 179.97438 * 16 15 3 19 19 S 1.80996 * 109.47047 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99973 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00055 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00100 * 180.02562 * 20 19 18 23 23 N 1.31628 * 119.99910 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 119.99974 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47206 * 59.99820 * 24 22 20 26 26 H 1.48499 * 109.47105 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47323 * 299.99557 * 24 22 20 28 28 H 1.09002 * 109.46804 * 299.99482 * 1 2 3 29 29 H 1.08992 * 109.47145 * 59.99984 * 1 2 3 30 30 H 1.09007 * 109.46993 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46804 * 240.00518 * 2 1 3 32 32 H 1.08997 * 109.47615 * 120.00548 * 2 1 3 33 33 H 1.09001 * 109.47002 * 294.99868 * 5 3 2 34 34 H 1.08993 * 109.46955 * 55.00306 * 5 3 2 35 35 H 0.96992 * 119.99966 * 359.97438 * 6 5 3 36 36 H 1.07994 * 125.79858 * 0.02562 * 10 9 7 37 37 H 1.07999 * 125.43917 * 179.75670 * 12 11 10 38 38 H 1.09006 * 109.47140 * 270.02206 * 14 13 12 39 39 H 1.09005 * 109.47255 * 30.02364 * 14 13 12 40 40 H 1.09002 * 109.47484 * 150.02301 * 14 13 12 41 41 H 0.96995 * 120.00562 * 265.00143 * 15 3 2 42 42 H 1.08995 * 109.47082 * 300.00227 * 18 16 15 43 43 H 1.09002 * 109.46986 * 59.99783 * 18 16 15 44 44 H 0.97006 * 120.00063 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0630 2.8169 0.0059 7 6 5.3856 3.0631 0.0867 8 8 6.1655 2.1460 0.2585 9 6 5.8868 4.4437 -0.0342 10 6 5.1497 5.5741 -0.2344 11 8 5.9831 6.6178 -0.2833 12 6 7.2564 6.2218 -0.1306 13 6 7.2863 4.8900 0.0294 14 6 8.5053 4.0276 0.2323 15 7 1.6524 2.0975 -1.2518 16 6 0.4350 2.6644 -1.3669 17 8 -0.3396 2.6319 -0.4342 18 6 0.0365 3.3387 -2.6543 19 16 -1.6425 3.9960 -2.4965 20 6 -1.8442 4.7072 -4.0959 21 1 -1.0438 4.6472 -4.8185 22 6 -3.0315 5.3455 -4.4269 23 7 -4.0069 5.4191 -3.5461 24 14 -3.2451 6.1001 -6.1223 25 1 -3.1059 5.0428 -7.1558 26 1 -4.5923 6.7164 -6.2236 27 1 -2.2071 7.1404 -6.3354 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8500 1.0377 1.0959 34 1 3.9953 0.8312 -0.6661 35 1 3.4410 3.5483 -0.1315 36 1 4.0753 5.6182 -0.3341 37 1 8.1191 6.8715 -0.1357 38 1 8.8836 3.6997 -0.7360 39 1 9.2752 4.6021 0.7476 40 1 8.2390 3.1572 0.8320 41 1 2.2718 2.1232 -1.9978 42 1 0.7279 4.1542 -2.8665 43 1 0.0679 2.6147 -3.4685 44 1 -4.8365 5.8655 -3.7773 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001746188082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:15 Heat of formation + Delta-G solvation = -71.401475 kcal Electronic energy + Delta-G solvation = -26631.551250 eV Core-core repulsion = 22676.579473 eV Total energy + Delta-G solvation = -3954.971777 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.87072 -40.12881 -39.25724 -36.51806 -34.17539 -34.10842 -32.49186 -32.45779 -31.14921 -29.38546 -28.12554 -27.50694 -25.53055 -24.48874 -22.79300 -21.53889 -20.77202 -20.44602 -20.24585 -18.46573 -17.82496 -16.76673 -16.49657 -16.42116 -16.30424 -15.77201 -15.32945 -15.16086 -14.93989 -14.84326 -14.24724 -13.76219 -13.69928 -13.56876 -13.47816 -13.35942 -13.16167 -13.05415 -12.79144 -12.55534 -12.33769 -11.82396 -11.80574 -11.49988 -11.24718 -11.08377 -11.07460 -10.83442 -10.78726 -10.24995 -9.87410 -9.86806 -9.49849 -9.35561 -9.10684 -9.00333 -8.96604 -8.30298 -6.55521 -6.26274 -3.97282 1.03393 1.71828 2.61049 2.79091 2.94790 3.01167 3.09269 3.20212 3.24557 3.27407 3.63336 4.16183 4.20149 4.29083 4.35973 4.68167 4.83799 4.94774 4.97916 5.07607 5.09167 5.10936 5.21034 5.37573 5.40548 5.43724 5.55111 5.57435 5.61523 5.71566 5.75161 5.79677 5.84091 6.01075 6.06786 6.08821 6.16201 6.19853 6.52017 6.59450 6.63849 7.18135 7.54674 7.58917 7.93342 8.30290 8.51188 9.19276 10.80967 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010254 B = 0.002737 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.998572 B =10227.389876 C =12466.165227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.134 3.866 4 H 0.096 0.904 5 C 0.115 3.885 6 N -0.726 5.726 7 C 0.589 3.411 8 O -0.535 6.535 9 C -0.239 4.239 10 C 0.029 3.971 11 O -0.169 6.169 12 C -0.047 4.047 13 C -0.133 4.133 14 C -0.086 4.086 15 N -0.737 5.737 16 C 0.532 3.468 17 O -0.507 6.507 18 C -0.155 4.155 19 S -0.057 6.057 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.402 0.598 36 H 0.212 0.788 37 H 0.207 0.793 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.398 0.602 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.985 -3.928 7.324 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.029 3.971 4 H 0.114 0.886 5 C -0.009 4.009 6 N -0.379 5.379 7 C 0.377 3.623 8 O -0.413 6.413 9 C -0.244 4.244 10 C -0.041 4.041 11 O -0.064 6.064 12 C -0.113 4.113 13 C -0.135 4.135 14 C -0.143 4.143 15 N -0.393 5.393 16 C 0.318 3.682 17 O -0.381 6.381 18 C -0.306 4.306 19 S 0.169 5.831 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.237 0.763 36 H 0.228 0.772 37 H 0.224 0.776 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.232 0.768 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 20.974 -4.299 9.027 23.235 hybrid contribution 0.692 0.743 -2.670 2.856 sum 21.666 -3.556 6.357 22.858 Atomic orbital electron populations 1.21806 0.93968 1.00762 1.03850 1.21876 0.97826 0.94878 1.02247 1.21257 0.92256 0.94838 0.88782 0.88573 1.21700 0.92786 0.83067 1.03342 1.45836 1.07136 1.10171 1.74712 1.17233 0.81841 0.87067 0.76128 1.90766 1.55833 1.45505 1.49225 1.21383 0.94214 0.93843 1.14932 1.24532 0.96240 0.83986 0.99385 1.83813 1.16725 1.35901 1.69926 1.23748 0.84815 0.95164 1.07560 1.21411 0.94062 0.93689 1.04362 1.20230 0.92573 0.98993 1.02474 1.46146 1.17474 1.59495 1.16137 1.20278 0.80767 0.77513 0.89604 1.90727 1.50196 1.57129 1.40030 1.23552 1.07112 1.02819 0.97119 1.85379 1.06326 1.70890 1.20457 1.22820 1.03933 1.42245 0.99551 0.91018 1.24983 0.94829 0.95531 0.98168 1.70000 1.05027 1.40911 1.34314 0.86236 0.77557 0.79273 0.82519 1.19940 1.20795 1.19923 0.91991 0.91741 0.93555 0.91668 0.91134 0.89844 0.90625 0.76278 0.77155 0.77603 0.91206 0.91738 0.89990 0.76766 0.89364 0.89306 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.51 37.16 0.32 -1.57 16 2 C -0.13 -1.26 5.61 -26.73 -0.15 -1.41 16 3 C 0.13 1.31 2.42 -67.93 -0.16 1.15 16 4 H 0.10 1.09 7.58 -51.93 -0.39 0.70 16 5 C 0.12 0.99 5.23 -4.04 -0.02 0.97 16 6 N -0.73 -6.55 5.38 -61.39 -0.33 -6.88 16 7 C 0.59 6.66 7.81 -12.54 -0.10 6.56 16 8 O -0.54 -7.60 15.41 5.27 0.08 -7.52 16 9 C -0.24 -2.45 6.31 -103.27 -0.65 -3.11 16 10 C 0.03 0.25 11.61 30.08 0.35 0.60 16 11 O -0.17 -1.53 10.52 7.66 0.08 -1.45 16 12 C -0.05 -0.37 11.96 29.30 0.35 -0.02 16 13 C -0.13 -1.28 6.37 -102.49 -0.65 -1.93 16 14 C -0.09 -0.72 10.00 36.01 0.36 -0.36 16 15 N -0.74 -8.11 4.47 -53.80 -0.24 -8.35 16 16 C 0.53 8.51 6.42 -10.98 -0.07 8.44 16 17 O -0.51 -9.90 13.00 5.55 0.07 -9.83 16 18 C -0.16 -2.85 6.16 36.00 0.22 -2.63 16 19 S -0.06 -1.46 20.57 -107.50 -2.21 -3.68 16 20 C -0.54 -14.80 9.50 30.94 0.29 -14.50 16 21 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.56 13.22 55.49 0.73 -24.82 16 24 Si 0.92 20.95 29.55 -169.99 -5.02 15.93 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H 0.06 0.87 7.85 -51.93 -0.41 0.47 16 29 H 0.06 1.01 5.64 -51.93 -0.29 0.72 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.40 3.17 7.11 -40.82 -0.29 2.88 16 36 H 0.21 1.17 7.47 -52.49 -0.39 0.78 16 37 H 0.21 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.84 6.92 -51.93 -0.36 0.48 16 41 H 0.40 3.58 8.60 -40.82 -0.35 3.23 16 42 H 0.09 1.47 8.14 -51.92 -0.42 1.05 16 43 H 0.09 1.54 8.14 -51.91 -0.42 1.12 16 44 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 385.48 15.07 5.81 5.81 Total: -1.00 -35.23 385.48 -7.30 -42.53 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.26 Total: 4.09 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -0.01 Total: -5.84 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.16 Total: -40.05 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: 0.23 Total: -18.79 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.23 -7.30 -42.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746188082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.875 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds