Wall clock time and date at job start Sat Apr 11 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46980 * 2 1 4 4 H 1.09000 * 109.47145 * 55.00233 * 3 2 1 5 5 C 1.53006 * 109.47102 * 175.00470 * 3 2 1 6 6 N 1.46504 * 109.46883 * 175.00371 * 5 3 2 7 7 C 1.34775 * 119.99531 * 179.97438 * 6 5 3 8 8 O 1.21612 * 120.00327 * 0.02562 * 7 6 5 9 9 C 1.47378 * 119.99868 * 179.97438 * 7 6 5 10 10 C 1.36418 * 127.19230 * 359.69099 * 9 7 6 11 11 O 1.33649 * 108.39371 * 179.88903 * 10 9 7 12 12 C 1.34215 * 110.91441 * 0.38695 * 11 10 9 13 13 C 1.34174 * 109.12030 * 359.76270 * 12 11 10 14 14 C 1.50699 * 127.02225 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.47308 * 295.00087 * 3 2 1 16 16 C 1.34783 * 120.00018 * 85.00189 * 15 3 2 17 17 O 1.21285 * 119.99349 * 359.97438 * 16 15 3 18 18 C 1.50698 * 120.00276 * 179.97438 * 16 15 3 19 19 S 1.80996 * 109.47047 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99973 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00055 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00100 * 180.02562 * 20 19 18 23 23 N 1.31628 * 119.99910 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 119.99974 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47206 * 59.99820 * 24 22 20 26 26 H 1.48499 * 109.47105 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47323 * 299.99557 * 24 22 20 28 28 H 1.09002 * 109.46804 * 299.99482 * 1 2 3 29 29 H 1.08992 * 109.47145 * 59.99984 * 1 2 3 30 30 H 1.09007 * 109.46993 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46804 * 240.00518 * 2 1 3 32 32 H 1.08997 * 109.47615 * 120.00548 * 2 1 3 33 33 H 1.09001 * 109.47002 * 294.99868 * 5 3 2 34 34 H 1.08993 * 109.46955 * 55.00306 * 5 3 2 35 35 H 0.96992 * 119.99966 * 359.97438 * 6 5 3 36 36 H 1.07994 * 125.79858 * 0.02562 * 10 9 7 37 37 H 1.07999 * 125.43917 * 179.75670 * 12 11 10 38 38 H 1.09006 * 109.47140 * 270.02206 * 14 13 12 39 39 H 1.09005 * 109.47255 * 30.02364 * 14 13 12 40 40 H 1.09002 * 109.47484 * 150.02301 * 14 13 12 41 41 H 0.96995 * 120.00562 * 265.00143 * 15 3 2 42 42 H 1.08995 * 109.47082 * 300.00227 * 18 16 15 43 43 H 1.09002 * 109.46986 * 59.99783 * 18 16 15 44 44 H 0.97006 * 120.00063 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0630 2.8169 0.0059 7 6 5.3856 3.0631 0.0867 8 8 6.1655 2.1460 0.2585 9 6 5.8868 4.4437 -0.0342 10 6 5.1497 5.5741 -0.2344 11 8 5.9831 6.6178 -0.2833 12 6 7.2564 6.2218 -0.1306 13 6 7.2863 4.8900 0.0294 14 6 8.5053 4.0276 0.2323 15 7 1.6524 2.0975 -1.2518 16 6 0.4350 2.6644 -1.3669 17 8 -0.3396 2.6319 -0.4342 18 6 0.0365 3.3387 -2.6543 19 16 -1.6425 3.9960 -2.4965 20 6 -1.8442 4.7072 -4.0959 21 1 -1.0438 4.6472 -4.8185 22 6 -3.0315 5.3455 -4.4269 23 7 -4.0069 5.4191 -3.5461 24 14 -3.2451 6.1001 -6.1223 25 1 -3.1059 5.0428 -7.1558 26 1 -4.5923 6.7164 -6.2236 27 1 -2.2071 7.1404 -6.3354 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8500 1.0377 1.0959 34 1 3.9953 0.8312 -0.6661 35 1 3.4410 3.5483 -0.1315 36 1 4.0753 5.6182 -0.3341 37 1 8.1191 6.8715 -0.1357 38 1 8.8836 3.6997 -0.7360 39 1 9.2752 4.6021 0.7476 40 1 8.2390 3.1572 0.8320 41 1 2.2718 2.1232 -1.9978 42 1 0.7279 4.1542 -2.8665 43 1 0.0679 2.6147 -3.4685 44 1 -4.8365 5.8655 -3.7773 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001746188082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:14 Heat of formation + Delta-G solvation = -96.649565 kcal Electronic energy + Delta-G solvation = -26632.646090 eV Core-core repulsion = 22676.579473 eV Total energy + Delta-G solvation = -3956.066616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.52476 -41.16753 -40.27586 -37.56296 -35.07238 -34.78795 -34.56750 -33.59471 -31.86770 -30.64613 -29.13650 -28.13339 -27.62828 -25.33404 -23.57663 -22.55752 -21.57276 -21.39498 -21.04815 -19.83060 -19.09300 -17.93167 -17.46827 -17.19170 -17.15460 -16.86298 -16.70977 -16.46295 -16.14851 -15.79013 -15.64541 -14.90353 -14.65150 -14.63465 -14.42241 -14.29536 -14.21434 -13.99507 -13.79016 -13.48102 -13.43032 -13.15027 -12.98173 -12.85255 -12.63937 -12.48712 -12.44875 -12.15032 -11.76893 -11.70477 -11.14161 -11.11639 -10.83332 -10.62459 -10.24042 -10.16041 -10.04641 -9.62397 -8.62383 -8.33403 -6.09713 0.33100 1.07078 1.28843 1.43655 1.47876 1.57377 1.68239 1.96508 2.11560 2.26463 2.28953 2.35219 3.00878 3.34523 3.53045 3.60088 3.64530 3.96742 4.00897 4.07625 4.14924 4.33918 4.34901 4.40718 4.48763 4.53929 4.57459 4.65913 4.81287 4.84365 4.92914 4.94668 5.04095 5.06850 5.07584 5.19086 5.31243 5.43250 5.49710 5.51317 5.55355 5.99240 6.20816 6.41528 6.52484 7.08615 7.12224 7.30508 8.75099 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010254 B = 0.002737 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.998572 B =10227.389876 C =12466.165227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.142 3.858 4 H 0.083 0.917 5 C 0.123 3.877 6 N -0.717 5.717 7 C 0.589 3.411 8 O -0.571 6.571 9 C -0.267 4.267 10 C 0.038 3.962 11 O -0.177 6.177 12 C -0.036 4.036 13 C -0.163 4.163 14 C -0.081 4.081 15 N -0.712 5.712 16 C 0.540 3.460 17 O -0.546 6.546 18 C -0.133 4.133 19 S -0.143 6.143 20 C -0.547 4.547 21 H 0.081 0.919 22 C 0.015 3.985 23 N -0.910 5.910 24 Si 0.993 3.007 25 H -0.264 1.264 26 H -0.280 1.280 27 H -0.262 1.262 28 H 0.042 0.958 29 H 0.033 0.967 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.409 0.591 36 H 0.236 0.764 37 H 0.242 0.758 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.057 0.943 41 H 0.413 0.587 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.082 -3.593 6.162 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.037 3.963 4 H 0.101 0.899 5 C 0.000 4.000 6 N -0.369 5.369 7 C 0.378 3.622 8 O -0.451 6.451 9 C -0.272 4.272 10 C -0.032 4.032 11 O -0.072 6.072 12 C -0.101 4.101 13 C -0.165 4.165 14 C -0.138 4.138 15 N -0.367 5.367 16 C 0.325 3.675 17 O -0.423 6.423 18 C -0.284 4.284 19 S 0.084 5.916 20 C -0.695 4.695 21 H 0.099 0.901 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.815 3.185 25 H -0.189 1.189 26 H -0.206 1.206 27 H -0.186 1.186 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.245 0.755 36 H 0.252 0.748 37 H 0.258 0.742 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.076 0.924 41 H 0.250 0.750 42 H 0.128 0.872 43 H 0.120 0.880 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 23.105 -3.974 7.852 24.724 hybrid contribution 0.125 0.583 -2.244 2.322 sum 23.230 -3.391 5.608 24.136 Atomic orbital electron populations 1.21736 0.96354 1.00635 1.01379 1.21857 0.95399 0.94874 1.04145 1.21265 0.92986 0.94720 0.87335 0.89879 1.21648 0.91337 0.83019 1.04033 1.45769 1.06652 1.10583 1.73894 1.17414 0.82050 0.87218 0.75540 1.90746 1.56729 1.46540 1.51116 1.21498 0.95169 0.93825 1.16669 1.24957 0.97128 0.83282 0.97863 1.83838 1.17350 1.36148 1.69836 1.24384 0.85146 0.95047 1.05542 1.21705 0.94186 0.94746 1.05875 1.20180 0.92968 0.98360 1.02275 1.45846 1.15793 1.57834 1.17196 1.19847 0.81810 0.77615 0.88197 1.90730 1.51736 1.58839 1.40970 1.23398 1.02283 1.03719 0.99030 1.85518 1.13023 1.71912 1.21104 1.23175 1.04382 1.42008 0.99895 0.90110 1.26061 0.94437 0.95982 1.02534 1.70165 1.05670 1.42132 1.36724 0.85074 0.77714 0.78605 0.77065 1.18892 1.20551 1.18617 0.93866 0.94787 0.92498 0.90244 0.88758 0.89240 0.89820 0.75518 0.74811 0.74181 0.91262 0.89421 0.92362 0.75035 0.87160 0.87952 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 8.51 71.98 0.61 -3.03 16 2 C -0.12 -2.15 5.61 30.59 0.17 -1.98 16 3 C 0.14 2.52 2.42 44.99 0.11 2.63 16 4 H 0.08 1.80 7.58 -2.39 -0.02 1.78 16 5 C 0.12 1.86 5.23 86.38 0.45 2.31 16 6 N -0.72 -11.69 5.38 -466.41 -2.51 -14.20 16 7 C 0.59 12.76 7.81 86.65 0.68 13.43 16 8 O -0.57 -16.01 15.41 -4.07 -0.06 -16.07 16 9 C -0.27 -5.20 6.31 -18.99 -0.12 -5.32 16 10 C 0.04 0.58 11.61 67.39 0.78 1.36 16 11 O -0.18 -2.84 10.52 4.50 0.05 -2.79 16 12 C -0.04 -0.48 11.96 66.89 0.80 0.32 16 13 C -0.16 -2.94 6.37 -18.49 -0.12 -3.06 16 14 C -0.08 -1.31 10.00 71.24 0.71 -0.60 16 15 N -0.71 -14.29 4.47 -442.52 -1.98 -16.27 16 16 C 0.54 16.86 6.42 87.66 0.56 17.42 16 17 O -0.55 -21.64 13.00 -3.04 -0.04 -21.68 16 18 C -0.13 -4.75 6.16 71.24 0.44 -4.32 16 19 S -0.14 -7.48 20.57 -56.49 -1.16 -8.64 16 20 C -0.55 -30.15 9.50 67.95 0.65 -29.51 16 21 H 0.08 4.14 7.80 -2.91 -0.02 4.11 16 22 C 0.01 0.82 5.49 84.86 0.47 1.29 16 23 N -0.91 -54.74 13.22 21.65 0.29 -54.46 16 24 Si 0.99 42.65 29.55 68.60 2.03 44.67 16 25 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 26 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 27 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 28 H 0.04 1.23 7.85 -2.39 -0.02 1.22 16 29 H 0.03 1.06 5.64 -2.39 -0.01 1.05 16 30 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.41 5.63 7.11 -92.71 -0.66 4.97 16 36 H 0.24 2.06 7.47 -2.91 -0.02 2.04 16 37 H 0.24 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.06 1.22 6.92 -2.39 -0.02 1.20 16 41 H 0.41 6.22 8.60 -92.71 -0.80 5.42 16 42 H 0.11 3.46 8.14 -2.40 -0.02 3.44 16 43 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 44 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -79.63 385.48 2.39 -77.24 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -0.42 Total: 21.25 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 6.19 Total: -9.06 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -4.20 Total: -84.92 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -0.05 Total: -40.54 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: -7.48 SS G_CDS: -1.16 Total: -8.64 kcal Total: -79.63 2.39 -77.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746188082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.407 kcal (2) G-P(sol) polarization free energy of solvation -79.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds