Wall clock time and date at job start Sat Apr 11 2020 05:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35655 * 116.99483 * 2 1 4 4 C 1.38644 * 120.14828 * 0.02562 * 3 2 1 5 5 C 1.38199 * 120.07649 * 180.02562 * 4 3 2 6 6 Cl 1.73592 * 119.82167 * 179.97438 * 5 4 3 7 7 C 1.38708 * 120.35802 * 359.97438 * 5 4 3 8 8 C 1.37729 * 120.28946 * 359.71886 * 7 5 4 9 9 C 1.39742 * 119.91597 * 0.58212 * 8 7 5 10 10 C 1.47476 * 120.17485 * 179.69535 * 9 8 7 11 11 O 1.21593 * 120.00353 * 179.72231 * 10 9 8 12 12 N 1.34777 * 120.00217 * 359.45138 * 10 9 8 13 13 C 1.46496 * 120.00344 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47401 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.46855 * 294.99711 * 14 13 12 16 16 N 1.46495 * 109.47181 * 54.99387 * 14 13 12 17 17 C 1.36939 * 120.00111 * 205.00335 * 16 14 13 18 18 H 1.07993 * 120.00064 * 0.02562 * 17 16 14 19 19 C 1.38814 * 120.00018 * 180.02562 * 17 16 14 20 20 N 1.31618 * 119.99779 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00042 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47298 * 90.00044 * 21 19 17 23 23 H 1.48500 * 109.47520 * 210.00038 * 21 19 17 24 24 H 1.48505 * 109.47363 * 330.00273 * 21 19 17 25 25 C 1.52995 * 109.47251 * 174.99794 * 14 13 12 26 26 C 1.53004 * 109.47105 * 59.99731 * 25 14 13 27 27 C 1.53005 * 109.47217 * 179.97438 * 25 14 13 28 28 H 1.09005 * 109.47153 * 299.99710 * 1 2 3 29 29 H 1.09000 * 109.47672 * 60.00117 * 1 2 3 30 30 H 1.09004 * 109.46811 * 179.97438 * 1 2 3 31 31 H 1.08004 * 119.95762 * 359.97438 * 4 3 2 32 32 H 1.08008 * 119.85099 * 180.02562 * 7 5 4 33 33 H 1.07996 * 120.04161 * 180.28137 * 8 7 5 34 34 H 0.97004 * 119.99647 * 359.97438 * 12 10 9 35 35 H 1.09007 * 109.47081 * 299.99675 * 13 12 10 36 36 H 1.08993 * 109.47302 * 59.99555 * 13 12 10 37 37 H 0.97004 * 120.00139 * 25.00259 * 16 14 13 38 38 H 0.97011 * 119.99706 * 180.02562 * 20 19 17 39 39 H 1.09004 * 109.47124 * 299.99753 * 25 14 13 40 40 H 1.08996 * 109.46840 * 60.00046 * 26 25 14 41 41 H 1.09001 * 109.46841 * 180.02562 * 26 25 14 42 42 H 1.09001 * 109.47311 * 299.99831 * 26 25 14 43 43 H 1.09000 * 109.46903 * 59.99836 * 27 25 14 44 44 H 1.08991 * 109.47201 * 179.97438 * 27 25 14 45 45 H 1.08991 * 109.46912 * 300.00178 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2088 0.0000 4 6 1.2925 2.3734 0.0005 5 6 1.9214 3.6040 0.0000 6 17 0.9731 5.0581 0.0000 7 6 3.3062 3.6837 -0.0005 8 6 4.0680 2.5363 0.0053 9 6 3.4444 1.2857 -0.0005 10 6 4.2546 0.0534 -0.0011 11 8 3.7088 -1.0331 -0.0011 12 7 5.6001 0.1315 -0.0072 13 6 6.4049 -1.0926 -0.0084 14 6 7.8905 -0.7263 -0.0163 15 1 8.1348 -0.2197 -0.9500 16 7 8.1803 0.1624 1.1117 17 6 9.2478 1.0182 1.0524 18 1 9.8757 1.0382 0.1740 19 6 9.5227 1.8599 2.1215 20 7 8.7577 1.8350 3.1922 21 14 10.9792 3.0267 2.0410 22 1 10.5452 4.3205 1.4553 23 1 11.5067 3.2553 3.4102 24 1 12.0437 2.4320 1.1933 25 6 8.7303 -1.9991 0.1083 26 6 8.4275 -2.9272 -1.0698 27 6 10.2158 -1.6328 0.0997 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2139 2.3188 0.0005 32 1 3.7891 4.6498 -0.0005 33 1 5.1459 2.6029 0.0094 34 1 6.0356 0.9983 -0.0116 35 1 6.1792 -1.6767 0.8839 36 1 6.1713 -1.6802 -0.8961 37 1 7.6161 0.1447 1.9006 38 1 8.9497 2.4235 3.9392 39 1 8.4860 -2.5056 1.0420 40 1 8.6718 -2.4206 -2.0035 41 1 9.0255 -3.8342 -0.9808 42 1 7.3692 -3.1882 -1.0641 43 1 10.4318 -0.9714 0.9388 44 1 10.8141 -2.5395 0.1889 45 1 10.4597 -1.1265 -0.8341 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753838267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:17 Heat of formation + Delta-G solvation = -50.185240 kcal Electronic energy + Delta-G solvation = -27512.194115 eV Core-core repulsion = 23556.098637 eV Total energy + Delta-G solvation = -3956.095478 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.63911 -38.91387 -37.78015 -37.15235 -36.43156 -33.82383 -33.12631 -31.44390 -30.40512 -30.29615 -28.10747 -27.31623 -26.09771 -24.31774 -23.36105 -22.42758 -21.69556 -20.22909 -19.37358 -18.59023 -17.47132 -16.86093 -16.67874 -15.97424 -15.54238 -15.27250 -15.18063 -14.89238 -14.53911 -14.02264 -13.95189 -13.62516 -13.56678 -13.40124 -13.21353 -12.78577 -12.60927 -12.23416 -12.05842 -12.01300 -11.91605 -11.61941 -11.55175 -11.20283 -11.05298 -10.98692 -10.94764 -10.81600 -10.63636 -10.30246 -10.10095 -9.95281 -9.56882 -9.50185 -9.13434 -8.93163 -8.61428 -8.35387 -7.04255 -5.83198 -3.12564 0.59299 1.14630 1.80551 2.91231 3.07974 3.37773 3.44718 3.46130 3.53434 3.80676 4.49659 4.52602 4.70427 4.83137 4.93003 4.96738 5.00121 5.27022 5.33379 5.36557 5.39254 5.42672 5.54534 5.64495 5.74502 5.79331 5.92673 5.95536 6.02764 6.05598 6.20285 6.26014 6.35266 6.38932 6.46827 6.54986 6.64074 6.69448 6.95779 7.08191 7.15367 7.30074 7.65563 7.97403 8.33959 8.62300 9.46085 10.01050 10.37191 11.38377 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010165 B = 0.003401 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.987481 B = 8230.326763 C =10517.299495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.273 6.273 3 C 0.194 3.806 4 C -0.218 4.218 5 C 0.027 3.973 6 Cl -0.066 7.066 7 C -0.156 4.156 8 C -0.028 4.028 9 C -0.161 4.161 10 C 0.556 3.444 11 O -0.531 6.531 12 N -0.709 5.709 13 C 0.115 3.885 14 C 0.170 3.830 15 H 0.053 0.947 16 N -0.722 5.722 17 C -0.238 4.238 18 H 0.073 0.927 19 C -0.009 4.009 20 N -0.928 5.928 21 Si 0.901 3.099 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.282 1.282 25 C -0.109 4.109 26 C -0.149 4.149 27 C -0.139 4.139 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.150 0.850 34 H 0.407 0.593 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.063 0.937 40 H 0.049 0.951 41 H 0.045 0.955 42 H 0.051 0.949 43 H 0.086 0.914 44 H 0.031 0.969 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.728 0.444 -8.415 16.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.184 6.184 3 C 0.145 3.855 4 C -0.237 4.237 5 C 0.000 4.000 6 Cl -0.037 7.037 7 C -0.174 4.174 8 C -0.047 4.047 9 C -0.165 4.165 10 C 0.342 3.658 11 O -0.409 6.409 12 N -0.362 5.362 13 C -0.009 4.009 14 C 0.059 3.941 15 H 0.071 0.929 16 N -0.363 5.363 17 C -0.369 4.369 18 H 0.091 0.909 19 C -0.206 4.206 20 N -0.576 5.576 21 Si 0.732 3.268 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 C -0.131 4.131 26 C -0.207 4.207 27 C -0.196 4.196 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.168 0.832 34 H 0.245 0.755 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.105 0.895 44 H 0.050 0.950 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -14.955 -0.312 -8.441 17.175 hybrid contribution 0.556 1.422 0.402 1.578 sum -14.399 1.110 -8.039 16.528 Atomic orbital electron populations 1.23198 0.78786 1.04444 1.01228 1.86431 1.20687 1.24733 1.86503 1.18832 0.90812 0.84448 0.91381 1.20999 1.00783 0.90338 1.11625 1.20819 0.91926 0.87122 1.00177 1.98379 1.72419 1.36293 1.96583 1.20923 0.91173 0.99981 1.05368 1.21320 1.00859 0.89956 0.92535 1.19583 0.90777 0.94710 1.11419 1.17831 0.82318 0.88220 0.77441 1.90789 1.71852 1.28500 1.49793 1.45888 1.05210 1.11118 1.73990 1.21736 0.91394 0.86170 1.01581 1.20553 0.89594 0.90925 0.93013 0.92856 1.42477 1.34101 1.43153 1.16592 1.19196 1.04487 1.12421 1.00749 0.90918 1.24717 0.99099 1.00219 0.96558 1.69665 1.39921 1.41589 1.06419 0.86290 0.82538 0.81226 0.76721 1.21772 1.21904 1.20762 1.21725 0.97170 0.96678 0.97512 1.21945 1.00788 0.99155 0.98829 1.21817 0.94522 1.00243 1.03054 0.92495 0.92571 0.87817 0.83949 0.84011 0.83212 0.75527 0.91827 0.91523 0.78061 0.93484 0.91878 0.93198 0.93592 0.92999 0.89501 0.95024 0.94079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.16 16 2 O -0.27 -3.90 8.57 -40.56 -0.35 -4.25 16 3 C 0.19 2.71 6.70 -38.70 -0.26 2.45 16 4 C -0.22 -2.49 8.80 -39.45 -0.35 -2.84 16 5 C 0.03 0.30 6.32 -39.42 -0.25 0.06 16 6 Cl -0.07 -0.66 28.94 -51.86 -1.50 -2.16 16 7 C -0.16 -1.83 9.80 -39.59 -0.39 -2.22 16 8 C -0.03 -0.37 9.53 -39.21 -0.37 -0.74 16 9 C -0.16 -2.44 5.89 -104.84 -0.62 -3.05 16 10 C 0.56 9.76 7.76 -12.50 -0.10 9.67 16 11 O -0.53 -10.79 15.16 -16.61 -0.25 -11.04 16 12 N -0.71 -11.92 5.34 -61.37 -0.33 -12.25 16 13 C 0.12 1.96 4.73 -4.04 -0.02 1.94 16 14 C 0.17 3.05 2.18 -67.93 -0.15 2.90 16 15 H 0.05 0.97 8.08 -51.93 -0.42 0.56 16 16 N -0.72 -15.94 4.44 -53.43 -0.24 -16.17 16 17 C -0.24 -5.83 7.57 -15.06 -0.11 -5.94 16 18 H 0.07 1.75 7.40 -52.49 -0.39 1.37 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 20 N -0.93 -26.09 13.06 55.49 0.72 -25.37 16 21 Si 0.90 21.03 29.55 -169.99 -5.02 16.00 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.11 -1.83 2.69 -90.62 -0.24 -2.08 16 26 C -0.15 -2.08 8.84 37.16 0.33 -1.76 16 27 C -0.14 -2.47 8.26 37.16 0.31 -2.16 16 28 H 0.06 0.42 7.66 -51.93 -0.40 0.03 16 29 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 30 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.14 1.28 6.30 -52.48 -0.33 0.95 16 32 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 33 H 0.15 1.89 6.40 -52.49 -0.34 1.55 16 34 H 0.41 6.71 6.17 -40.82 -0.25 6.46 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.07 6.71 -51.93 -0.35 0.72 16 37 H 0.39 9.41 7.80 -40.82 -0.32 9.09 16 38 H 0.26 7.08 8.31 -40.81 -0.34 6.74 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.69 6.54 -51.93 -0.34 0.35 16 43 H 0.09 1.83 6.01 -51.93 -0.31 1.52 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 380.85 15.07 5.74 5.74 Total: -1.00 -29.73 380.85 -8.91 -38.64 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -6.36 Total: 13.81 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -1.33 Total: -2.95 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.16 Total: -53.79 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.60 Total: -15.28 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.73 -8.91 -38.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753838267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.548 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds