Wall clock time and date at job start Sat Apr 11 2020 05:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35655 * 116.99483 * 2 1 4 4 C 1.38644 * 120.14828 * 0.02562 * 3 2 1 5 5 C 1.38199 * 120.07649 * 180.02562 * 4 3 2 6 6 Cl 1.73592 * 119.82167 * 179.97438 * 5 4 3 7 7 C 1.38708 * 120.35802 * 359.97438 * 5 4 3 8 8 C 1.37729 * 120.28946 * 359.71886 * 7 5 4 9 9 C 1.39742 * 119.91597 * 0.58212 * 8 7 5 10 10 C 1.47476 * 120.17485 * 179.69535 * 9 8 7 11 11 O 1.21593 * 120.00353 * 179.72231 * 10 9 8 12 12 N 1.34777 * 120.00217 * 359.45138 * 10 9 8 13 13 C 1.46496 * 120.00344 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47401 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.46855 * 294.99711 * 14 13 12 16 16 N 1.46495 * 109.47181 * 54.99387 * 14 13 12 17 17 C 1.36939 * 120.00111 * 205.00335 * 16 14 13 18 18 H 1.07993 * 120.00064 * 0.02562 * 17 16 14 19 19 C 1.38814 * 120.00018 * 180.02562 * 17 16 14 20 20 N 1.31618 * 119.99779 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00042 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47298 * 90.00044 * 21 19 17 23 23 H 1.48500 * 109.47520 * 210.00038 * 21 19 17 24 24 H 1.48505 * 109.47363 * 330.00273 * 21 19 17 25 25 C 1.52995 * 109.47251 * 174.99794 * 14 13 12 26 26 C 1.53004 * 109.47105 * 59.99731 * 25 14 13 27 27 C 1.53005 * 109.47217 * 179.97438 * 25 14 13 28 28 H 1.09005 * 109.47153 * 299.99710 * 1 2 3 29 29 H 1.09000 * 109.47672 * 60.00117 * 1 2 3 30 30 H 1.09004 * 109.46811 * 179.97438 * 1 2 3 31 31 H 1.08004 * 119.95762 * 359.97438 * 4 3 2 32 32 H 1.08008 * 119.85099 * 180.02562 * 7 5 4 33 33 H 1.07996 * 120.04161 * 180.28137 * 8 7 5 34 34 H 0.97004 * 119.99647 * 359.97438 * 12 10 9 35 35 H 1.09007 * 109.47081 * 299.99675 * 13 12 10 36 36 H 1.08993 * 109.47302 * 59.99555 * 13 12 10 37 37 H 0.97004 * 120.00139 * 25.00259 * 16 14 13 38 38 H 0.97011 * 119.99706 * 180.02562 * 20 19 17 39 39 H 1.09004 * 109.47124 * 299.99753 * 25 14 13 40 40 H 1.08996 * 109.46840 * 60.00046 * 26 25 14 41 41 H 1.09001 * 109.46841 * 180.02562 * 26 25 14 42 42 H 1.09001 * 109.47311 * 299.99831 * 26 25 14 43 43 H 1.09000 * 109.46903 * 59.99836 * 27 25 14 44 44 H 1.08991 * 109.47201 * 179.97438 * 27 25 14 45 45 H 1.08991 * 109.46912 * 300.00178 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2088 0.0000 4 6 1.2925 2.3734 0.0005 5 6 1.9214 3.6040 0.0000 6 17 0.9731 5.0581 0.0000 7 6 3.3062 3.6837 -0.0005 8 6 4.0680 2.5363 0.0053 9 6 3.4444 1.2857 -0.0005 10 6 4.2546 0.0534 -0.0011 11 8 3.7088 -1.0331 -0.0011 12 7 5.6001 0.1315 -0.0072 13 6 6.4049 -1.0926 -0.0084 14 6 7.8905 -0.7263 -0.0163 15 1 8.1348 -0.2197 -0.9500 16 7 8.1803 0.1624 1.1117 17 6 9.2478 1.0182 1.0524 18 1 9.8757 1.0382 0.1740 19 6 9.5227 1.8599 2.1215 20 7 8.7577 1.8350 3.1922 21 14 10.9792 3.0267 2.0410 22 1 10.5452 4.3205 1.4553 23 1 11.5067 3.2553 3.4102 24 1 12.0437 2.4320 1.1933 25 6 8.7303 -1.9991 0.1083 26 6 8.4275 -2.9272 -1.0698 27 6 10.2158 -1.6328 0.0997 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2139 2.3188 0.0005 32 1 3.7891 4.6498 -0.0005 33 1 5.1459 2.6029 0.0094 34 1 6.0356 0.9983 -0.0116 35 1 6.1792 -1.6767 0.8839 36 1 6.1713 -1.6802 -0.8961 37 1 7.6161 0.1447 1.9006 38 1 8.9497 2.4235 3.9392 39 1 8.4860 -2.5056 1.0420 40 1 8.6718 -2.4206 -2.0035 41 1 9.0255 -3.8342 -0.9808 42 1 7.3692 -3.1882 -1.0641 43 1 10.4318 -0.9714 0.9388 44 1 10.8141 -2.5395 0.1889 45 1 10.4597 -1.1265 -0.8341 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753838267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:16 Heat of formation + Delta-G solvation = -67.142125 kcal Electronic energy + Delta-G solvation = -27512.929421 eV Core-core repulsion = 23556.098637 eV Total energy + Delta-G solvation = -3956.830784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.69919 -40.19014 -38.75070 -38.60409 -37.35668 -35.25121 -34.88811 -32.58036 -31.96413 -31.35391 -29.51137 -28.17786 -27.43699 -25.84327 -24.76854 -23.51970 -22.99534 -21.54947 -20.75815 -19.72062 -19.06976 -18.20228 -17.73818 -16.98905 -16.82848 -16.63718 -16.33016 -16.04805 -15.93176 -15.57615 -15.16185 -14.93829 -14.83456 -14.73224 -14.38940 -14.13098 -13.73802 -13.57757 -13.40459 -12.96656 -12.89815 -12.82957 -12.81303 -12.66051 -12.42825 -12.36814 -12.25324 -12.05127 -11.99100 -11.85820 -11.72753 -11.42148 -11.25530 -10.94441 -10.75173 -10.14954 -9.93509 -9.37679 -8.92684 -7.83843 -5.11062 -0.43816 0.18704 0.90562 1.52302 1.54563 1.60814 1.75037 2.20669 2.26199 2.62646 2.65678 3.49117 3.58033 3.70842 3.87734 3.90450 3.94476 3.97134 4.25486 4.30710 4.33471 4.35210 4.36420 4.48350 4.48904 4.64920 4.71100 4.76765 4.85362 4.95151 5.00484 5.02340 5.06567 5.09943 5.17904 5.29297 5.34916 5.40863 5.55896 5.64455 5.68132 5.79907 6.25809 6.35751 6.61897 7.26696 7.44106 8.14980 8.40789 9.38854 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010165 B = 0.003401 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.987481 B = 8230.326763 C =10517.299495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.305 6.305 3 C 0.186 3.814 4 C -0.209 4.209 5 C 0.029 3.971 6 Cl -0.048 7.048 7 C -0.156 4.156 8 C -0.029 4.029 9 C -0.189 4.189 10 C 0.553 3.447 11 O -0.565 6.565 12 N -0.708 5.708 13 C 0.124 3.876 14 C 0.173 3.827 15 H 0.058 0.942 16 N -0.727 5.727 17 C -0.214 4.214 18 H 0.080 0.920 19 C -0.068 4.068 20 N -0.966 5.966 21 Si 0.956 3.044 22 H -0.288 1.288 23 H -0.307 1.307 24 H -0.273 1.273 25 C -0.106 4.106 26 C -0.141 4.141 27 C -0.134 4.134 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.115 0.885 31 H 0.169 0.831 32 H 0.160 0.840 33 H 0.149 0.851 34 H 0.409 0.591 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.372 0.628 38 H 0.246 0.754 39 H 0.049 0.951 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.508 0.893 -10.076 18.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.216 6.216 3 C 0.137 3.863 4 C -0.228 4.228 5 C 0.002 3.998 6 Cl -0.019 7.019 7 C -0.175 4.175 8 C -0.048 4.048 9 C -0.193 4.193 10 C 0.341 3.659 11 O -0.446 6.446 12 N -0.360 5.360 13 C 0.000 4.000 14 C 0.064 3.936 15 H 0.076 0.924 16 N -0.367 5.367 17 C -0.346 4.346 18 H 0.097 0.903 19 C -0.261 4.261 20 N -0.618 5.618 21 Si 0.787 3.213 22 H -0.216 1.216 23 H -0.234 1.234 24 H -0.198 1.198 25 C -0.128 4.128 26 C -0.199 4.199 27 C -0.192 4.192 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.133 0.867 31 H 0.187 0.813 32 H 0.177 0.823 33 H 0.167 0.833 34 H 0.246 0.754 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.204 0.796 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.725 0.126 -10.158 18.721 hybrid contribution 0.700 1.248 0.856 1.667 sum -15.025 1.374 -9.302 17.725 Atomic orbital electron populations 1.23522 0.76291 1.05894 1.02860 1.86385 1.23445 1.25299 1.86493 1.18974 0.90609 0.85268 0.91440 1.21204 1.01928 0.89377 1.10303 1.20946 0.92052 0.87843 0.98979 1.98390 1.71884 1.35190 1.96390 1.21117 0.91501 1.00146 1.04729 1.21315 1.00970 0.89864 0.92660 1.19534 0.91470 0.94157 1.14173 1.18236 0.82374 0.88775 0.76468 1.90751 1.72370 1.29899 1.51571 1.45877 1.05264 1.11032 1.73811 1.21629 0.90617 0.86333 1.01470 1.20679 0.90471 0.90885 0.91531 0.92361 1.42581 1.33298 1.43652 1.17171 1.19464 1.03984 1.11051 1.00112 0.90250 1.25311 1.01522 1.02439 0.96785 1.69812 1.41848 1.42964 1.07133 0.85396 0.80364 0.79715 0.75828 1.21569 1.23400 1.19775 1.21624 0.96321 0.96359 0.98471 1.21855 1.01501 0.98980 0.97544 1.21727 0.95319 1.00421 1.01684 0.91014 0.90639 0.86663 0.81330 0.82268 0.83327 0.75377 0.93398 0.90073 0.79599 0.94483 0.93222 0.92155 0.92115 0.92414 0.93166 0.93123 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.25 16 2 O -0.30 -8.62 8.57 -68.78 -0.59 -9.21 16 3 C 0.19 5.11 6.70 22.84 0.15 5.26 16 4 C -0.21 -4.40 8.80 22.36 0.20 -4.20 16 5 C 0.03 0.61 6.32 22.37 0.14 0.75 16 6 Cl -0.05 -0.84 28.94 -2.72 -0.08 -0.92 16 7 C -0.16 -3.47 9.80 22.26 0.22 -3.25 16 8 C -0.03 -0.76 9.53 22.51 0.21 -0.55 16 9 C -0.19 -5.79 5.89 -20.01 -0.12 -5.91 16 10 C 0.55 19.91 7.76 86.68 0.67 20.59 16 11 O -0.57 -23.53 15.16 16.92 0.26 -23.27 16 12 N -0.71 -24.21 5.34 -466.33 -2.49 -26.70 16 13 C 0.12 4.21 4.73 86.38 0.41 4.62 16 14 C 0.17 6.15 2.18 44.99 0.10 6.25 16 15 H 0.06 2.05 8.08 -2.38 -0.02 2.03 16 16 N -0.73 -32.45 4.44 -322.95 -1.43 -33.89 16 17 C -0.21 -10.52 7.57 84.03 0.64 -9.88 16 18 H 0.08 3.75 7.40 -2.91 -0.02 3.73 16 19 C -0.07 -3.61 5.50 84.86 0.47 -3.15 16 20 N -0.97 -55.71 13.06 21.65 0.28 -55.43 16 21 Si 0.96 43.61 29.55 68.60 2.03 45.64 16 22 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.31 -14.59 7.11 99.48 0.71 -13.88 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 25 C -0.11 -3.46 2.69 -10.79 -0.03 -3.49 16 26 C -0.14 -3.59 8.84 71.98 0.64 -2.95 16 27 C -0.13 -4.58 8.26 71.98 0.59 -3.98 16 28 H 0.07 0.92 7.66 -2.38 -0.02 0.90 16 29 H 0.08 0.90 7.66 -2.39 -0.02 0.88 16 30 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.17 2.54 6.30 -2.91 -0.02 2.52 16 32 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 33 H 0.15 3.80 6.40 -2.91 -0.02 3.79 16 34 H 0.41 13.72 6.17 -92.71 -0.57 13.15 16 35 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.08 2.54 6.71 -2.39 -0.02 2.52 16 37 H 0.37 18.68 7.80 -92.71 -0.72 17.95 16 38 H 0.25 14.09 8.31 -92.70 -0.77 13.32 16 39 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.06 1.41 6.54 -2.39 -0.02 1.40 16 43 H 0.05 2.08 6.01 -2.39 -0.01 2.07 16 44 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -64.83 380.85 3.11 -61.71 By element: Atomic # 1 Polarization: 40.98 SS G_CDS: -0.26 Total: 40.71 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 5.40 Total: 1.35 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -3.64 Total: -116.02 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.33 Total: -32.48 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.92 kcal Total: -64.83 3.11 -61.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753838267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.428 kcal (2) G-P(sol) polarization free energy of solvation -64.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds