Wall clock time and date at job start Sat Apr 11 2020 05:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35650 * 117.00002 * 2 1 4 4 C 1.38637 * 120.14474 * 359.97438 * 3 2 1 5 5 C 1.38208 * 120.07592 * 180.02562 * 4 3 2 6 6 Cl 1.73595 * 119.82047 * 179.97438 * 5 4 3 7 7 C 1.38696 * 120.35821 * 0.02562 * 5 4 3 8 8 C 1.37726 * 120.28805 * 359.73396 * 7 5 4 9 9 C 1.39740 * 119.92415 * 0.51632 * 8 7 5 10 10 C 1.47470 * 120.18537 * 179.76637 * 9 8 7 11 11 O 1.21589 * 120.00195 * 179.72552 * 10 9 8 12 12 N 1.34781 * 119.99801 * 359.72122 * 10 9 8 13 13 C 1.46493 * 120.00398 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47346 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.47177 * 65.00353 * 14 13 12 16 16 N 1.46493 * 109.47542 * 305.00099 * 14 13 12 17 17 C 1.36936 * 120.00314 * 154.99721 * 16 14 13 18 18 H 1.08001 * 120.00159 * 0.02562 * 17 16 14 19 19 C 1.38811 * 119.99842 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99540 * 179.72505 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 C 1.53006 * 109.47133 * 185.00123 * 14 13 12 26 26 C 1.53003 * 109.47119 * 300.00294 * 25 14 13 27 27 C 1.52998 * 109.47063 * 59.99974 * 25 14 13 28 28 H 1.08993 * 109.47004 * 60.00040 * 1 2 3 29 29 H 1.08998 * 109.47026 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47117 * 299.99877 * 1 2 3 31 31 H 1.08004 * 119.96374 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.85347 * 179.97438 * 7 5 4 33 33 H 1.08010 * 120.03907 * 180.26127 * 8 7 5 34 34 H 0.96998 * 119.99643 * 0.02562 * 12 10 9 35 35 H 1.09009 * 109.46774 * 60.00205 * 13 12 10 36 36 H 1.09002 * 109.47338 * 300.00832 * 13 12 10 37 37 H 0.97000 * 120.00040 * 334.99853 * 16 14 13 38 38 H 0.96999 * 119.99889 * 180.27497 * 20 19 17 39 39 H 1.08997 * 109.47326 * 180.02562 * 25 14 13 40 40 H 1.08997 * 109.47066 * 59.99786 * 26 25 14 41 41 H 1.09000 * 109.47191 * 180.02562 * 26 25 14 42 42 H 1.09004 * 109.47044 * 299.99680 * 26 25 14 43 43 H 1.09003 * 109.46883 * 60.00249 * 27 25 14 44 44 H 1.09000 * 109.46935 * 180.02562 * 27 25 14 45 45 H 1.08997 * 109.47266 * 300.00302 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2927 2.3733 -0.0005 5 6 1.9217 3.6040 -0.0011 6 17 0.9734 5.0580 -0.0024 7 6 3.3064 3.6835 -0.0016 8 6 4.0681 2.5361 0.0039 9 6 3.4446 1.2855 -0.0008 10 6 4.2546 0.0532 -0.0002 11 8 3.7087 -1.0333 0.0007 12 7 5.6002 0.1312 -0.0007 13 6 6.4050 -1.0929 0.0006 14 6 7.8904 -0.7266 0.0003 15 1 8.1392 -0.2171 0.9313 16 7 8.1751 0.1584 -1.1318 17 6 9.2428 1.0142 -1.0803 18 1 9.8753 1.0365 -0.2052 19 6 9.5121 1.8532 -2.1529 20 7 10.5352 2.6797 -2.1012 21 14 8.4178 1.8152 -3.6663 22 1 8.9486 0.8239 -4.6362 23 1 7.0390 1.4312 -3.2706 24 1 8.3957 3.1603 -4.2952 25 6 8.7296 -1.9999 -0.1241 26 6 8.4324 -2.9243 1.0583 27 6 8.3805 -2.7151 -1.4308 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.2141 2.3188 -0.0014 32 1 3.7893 4.6495 -0.0024 33 1 5.1461 2.6028 0.0077 34 1 6.0357 0.9979 -0.0011 35 1 6.1749 -1.6798 -0.8888 36 1 6.1754 -1.6778 0.8912 37 1 7.6072 0.1382 -1.9180 38 1 10.7211 3.2687 -2.8491 39 1 9.7879 -1.7391 -0.1238 40 1 7.3741 -3.1852 1.0584 41 1 9.0306 -3.8312 0.9699 42 1 8.6811 -2.4148 1.9893 43 1 8.5923 -2.0566 -2.2732 44 1 8.9780 -3.6224 -1.5193 45 1 7.3222 -2.9760 -1.4307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753838268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:19 Heat of formation + Delta-G solvation = -45.133306 kcal Electronic energy + Delta-G solvation = -27703.914774 eV Core-core repulsion = 23748.038364 eV Total energy + Delta-G solvation = -3955.876410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.74253 -39.07809 -37.87454 -37.38021 -36.51288 -33.85651 -33.29311 -31.49487 -30.77250 -30.49607 -27.97097 -27.25272 -26.71436 -24.44342 -23.34081 -22.45297 -22.18247 -20.38270 -19.10545 -18.44634 -17.87875 -17.04621 -16.76271 -16.06332 -15.79801 -15.42470 -15.24795 -15.04911 -14.47331 -14.26109 -13.93717 -13.82787 -13.63713 -13.51633 -13.04702 -12.92330 -12.70483 -12.68016 -12.45231 -12.14246 -12.05886 -11.64216 -11.56755 -11.29903 -11.26393 -11.12623 -11.07236 -10.99364 -10.67347 -10.50651 -10.16853 -9.85086 -9.65069 -9.63719 -9.22896 -8.98657 -8.73201 -8.45548 -7.36134 -5.84683 -3.21279 0.49266 1.05182 1.73064 2.80399 2.99171 3.31116 3.35875 3.39327 3.42699 3.69024 4.40476 4.51697 4.61661 4.74569 4.81904 4.89726 4.91686 5.15924 5.18047 5.24064 5.28229 5.32068 5.38497 5.56038 5.63761 5.68933 5.74179 5.82991 5.86008 5.94917 6.02232 6.05660 6.24064 6.25548 6.28614 6.36845 6.52685 6.62008 6.77952 6.88497 6.97591 7.06471 7.83001 7.91327 8.33951 8.48941 9.11987 9.84253 10.03651 11.33228 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010209 B = 0.003682 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.055002 B = 7603.750610 C = 9556.877661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.273 6.273 3 C 0.195 3.805 4 C -0.217 4.217 5 C 0.027 3.973 6 Cl -0.064 7.064 7 C -0.155 4.155 8 C -0.031 4.031 9 C -0.163 4.163 10 C 0.555 3.445 11 O -0.528 6.528 12 N -0.714 5.714 13 C 0.109 3.891 14 C 0.175 3.825 15 H 0.063 0.937 16 N -0.745 5.745 17 C -0.246 4.246 18 H 0.092 0.908 19 C 0.011 3.989 20 N -0.930 5.930 21 Si 0.877 3.123 22 H -0.284 1.284 23 H -0.276 1.276 24 H -0.291 1.291 25 C -0.110 4.110 26 C -0.149 4.149 27 C -0.142 4.142 28 H 0.056 0.944 29 H 0.104 0.896 30 H 0.057 0.943 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.407 0.593 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.362 0.638 38 H 0.260 0.740 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.051 0.949 43 H 0.061 0.939 44 H 0.042 0.958 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.131 -1.879 6.093 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.184 6.184 3 C 0.146 3.854 4 C -0.237 4.237 5 C 0.000 4.000 6 Cl -0.035 7.035 7 C -0.174 4.174 8 C -0.050 4.050 9 C -0.167 4.167 10 C 0.342 3.658 11 O -0.406 6.406 12 N -0.367 5.367 13 C -0.015 4.015 14 C 0.065 3.935 15 H 0.080 0.920 16 N -0.388 5.388 17 C -0.375 4.375 18 H 0.109 0.891 19 C -0.186 4.186 20 N -0.578 5.578 21 Si 0.707 3.293 22 H -0.211 1.211 23 H -0.202 1.202 24 H -0.217 1.217 25 C -0.132 4.132 26 C -0.207 4.207 27 C -0.200 4.200 28 H 0.075 0.925 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.167 0.833 34 H 0.244 0.756 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.196 0.804 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -19.306 -2.596 6.160 20.430 hybrid contribution -0.741 0.849 -1.294 1.715 sum -20.046 -1.748 4.866 20.702 Atomic orbital electron populations 1.23206 0.78681 1.04507 1.01277 1.86426 1.20774 1.24710 1.86467 1.18825 0.90774 0.84491 0.91302 1.21019 1.00847 0.90324 1.11491 1.20834 0.91950 0.87218 0.99982 1.98385 1.72362 1.36160 1.96547 1.20936 0.91212 1.00013 1.05263 1.21324 1.00835 0.90021 0.92819 1.19575 0.90828 0.94656 1.11687 1.17843 0.82257 0.88285 0.77433 1.90793 1.71785 1.28471 1.49563 1.45942 1.05335 1.11130 1.74304 1.21871 0.91313 0.86215 1.02085 1.20493 0.89811 0.90676 0.92506 0.91951 1.42833 1.34151 1.45143 1.16690 1.19045 1.03483 1.12252 1.02752 0.89054 1.24631 0.97661 0.98561 0.97720 1.69693 1.29597 1.26400 1.32079 0.86681 0.80793 0.77138 0.84678 1.21096 1.20224 1.21748 1.21685 1.01729 0.95662 0.94147 1.21918 1.01084 0.99237 0.98434 1.21789 1.00140 0.99501 0.98538 0.92496 0.87763 0.92482 0.83864 0.83875 0.83267 0.75625 0.91354 0.91118 0.80446 0.93004 0.90398 0.92904 0.93375 0.93007 0.91970 0.93860 0.93430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.27 -3.72 8.57 -40.54 -0.35 -4.07 16 3 C 0.20 2.60 6.70 -38.70 -0.26 2.34 16 4 C -0.22 -2.36 8.80 -39.44 -0.35 -2.71 16 5 C 0.03 0.30 6.32 -39.42 -0.25 0.05 16 6 Cl -0.06 -0.61 28.94 -51.86 -1.50 -2.11 16 7 C -0.16 -1.74 9.80 -39.60 -0.39 -2.13 16 8 C -0.03 -0.39 9.53 -39.21 -0.37 -0.76 16 9 C -0.16 -2.36 5.89 -104.84 -0.62 -2.98 16 10 C 0.56 9.31 7.76 -12.50 -0.10 9.21 16 11 O -0.53 -10.26 15.16 -16.60 -0.25 -10.51 16 12 N -0.71 -11.43 5.34 -61.37 -0.33 -11.76 16 13 C 0.11 1.75 4.51 -4.05 -0.02 1.73 16 14 C 0.18 3.03 2.27 -67.93 -0.15 2.88 16 15 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 16 N -0.75 -15.70 3.60 -53.43 -0.19 -15.89 16 17 C -0.25 -6.28 10.41 -15.06 -0.16 -6.44 16 18 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 19 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 20 N -0.93 -27.73 13.97 55.49 0.78 -26.95 16 21 Si 0.88 21.05 27.74 -169.99 -4.72 16.34 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.23 6.51 56.52 0.37 -5.86 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 C -0.11 -1.78 2.91 -90.62 -0.26 -2.04 16 26 C -0.15 -1.97 8.84 37.16 0.33 -1.64 16 27 C -0.14 -2.25 8.69 37.16 0.32 -1.92 16 28 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 31 H 0.14 1.21 6.30 -52.48 -0.33 0.88 16 32 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.15 1.75 6.40 -52.48 -0.34 1.41 16 34 H 0.41 6.33 6.17 -40.82 -0.25 6.08 16 35 H 0.07 1.15 6.18 -51.92 -0.32 0.83 16 36 H 0.07 1.07 6.71 -51.93 -0.35 0.72 16 37 H 0.36 7.81 5.65 -40.82 -0.23 7.58 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 39 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 40 H 0.05 0.67 6.54 -51.93 -0.34 0.33 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 1.11 7.60 -51.93 -0.39 0.72 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.70 6.32 -51.93 -0.33 0.37 16 LS Contribution 378.20 15.07 5.70 5.70 Total: -1.00 -31.44 378.20 -8.46 -39.90 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -6.22 Total: 12.44 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -1.38 Total: -3.08 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.26 Total: -54.60 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.60 Total: -14.58 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.72 Total: 16.34 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.44 -8.46 -39.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753838268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.231 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds