Wall clock time and date at job start Sat Apr 11 2020 05:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35650 * 117.00002 * 2 1 4 4 C 1.38637 * 120.14474 * 359.97438 * 3 2 1 5 5 C 1.38208 * 120.07592 * 180.02562 * 4 3 2 6 6 Cl 1.73595 * 119.82047 * 179.97438 * 5 4 3 7 7 C 1.38696 * 120.35821 * 0.02562 * 5 4 3 8 8 C 1.37726 * 120.28805 * 359.73396 * 7 5 4 9 9 C 1.39740 * 119.92415 * 0.51632 * 8 7 5 10 10 C 1.47470 * 120.18537 * 179.76637 * 9 8 7 11 11 O 1.21589 * 120.00195 * 179.72552 * 10 9 8 12 12 N 1.34781 * 119.99801 * 359.72122 * 10 9 8 13 13 C 1.46493 * 120.00398 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47346 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.47177 * 65.00353 * 14 13 12 16 16 N 1.46493 * 109.47542 * 305.00099 * 14 13 12 17 17 C 1.36936 * 120.00314 * 154.99721 * 16 14 13 18 18 H 1.08001 * 120.00159 * 0.02562 * 17 16 14 19 19 C 1.38811 * 119.99842 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99540 * 179.72505 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 C 1.53006 * 109.47133 * 185.00123 * 14 13 12 26 26 C 1.53003 * 109.47119 * 300.00294 * 25 14 13 27 27 C 1.52998 * 109.47063 * 59.99974 * 25 14 13 28 28 H 1.08993 * 109.47004 * 60.00040 * 1 2 3 29 29 H 1.08998 * 109.47026 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47117 * 299.99877 * 1 2 3 31 31 H 1.08004 * 119.96374 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.85347 * 179.97438 * 7 5 4 33 33 H 1.08010 * 120.03907 * 180.26127 * 8 7 5 34 34 H 0.96998 * 119.99643 * 0.02562 * 12 10 9 35 35 H 1.09009 * 109.46774 * 60.00205 * 13 12 10 36 36 H 1.09002 * 109.47338 * 300.00832 * 13 12 10 37 37 H 0.97000 * 120.00040 * 334.99853 * 16 14 13 38 38 H 0.96999 * 119.99889 * 180.27497 * 20 19 17 39 39 H 1.08997 * 109.47326 * 180.02562 * 25 14 13 40 40 H 1.08997 * 109.47066 * 59.99786 * 26 25 14 41 41 H 1.09000 * 109.47191 * 180.02562 * 26 25 14 42 42 H 1.09004 * 109.47044 * 299.99680 * 26 25 14 43 43 H 1.09003 * 109.46883 * 60.00249 * 27 25 14 44 44 H 1.09000 * 109.46935 * 180.02562 * 27 25 14 45 45 H 1.08997 * 109.47266 * 300.00302 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2927 2.3733 -0.0005 5 6 1.9217 3.6040 -0.0011 6 17 0.9734 5.0580 -0.0024 7 6 3.3064 3.6835 -0.0016 8 6 4.0681 2.5361 0.0039 9 6 3.4446 1.2855 -0.0008 10 6 4.2546 0.0532 -0.0002 11 8 3.7087 -1.0333 0.0007 12 7 5.6002 0.1312 -0.0007 13 6 6.4050 -1.0929 0.0006 14 6 7.8904 -0.7266 0.0003 15 1 8.1392 -0.2171 0.9313 16 7 8.1751 0.1584 -1.1318 17 6 9.2428 1.0142 -1.0803 18 1 9.8753 1.0365 -0.2052 19 6 9.5121 1.8532 -2.1529 20 7 10.5352 2.6797 -2.1012 21 14 8.4178 1.8152 -3.6663 22 1 8.9486 0.8239 -4.6362 23 1 7.0390 1.4312 -3.2706 24 1 8.3957 3.1603 -4.2952 25 6 8.7296 -1.9999 -0.1241 26 6 8.4324 -2.9243 1.0583 27 6 8.3805 -2.7151 -1.4308 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.2141 2.3188 -0.0014 32 1 3.7893 4.6495 -0.0024 33 1 5.1461 2.6028 0.0077 34 1 6.0357 0.9979 -0.0011 35 1 6.1749 -1.6798 -0.8888 36 1 6.1754 -1.6778 0.8912 37 1 7.6072 0.1382 -1.9180 38 1 10.7211 3.2687 -2.8491 39 1 9.7879 -1.7391 -0.1238 40 1 7.3741 -3.1852 1.0584 41 1 9.0306 -3.8312 0.9699 42 1 8.6811 -2.4148 1.9893 43 1 8.5923 -2.0566 -2.2732 44 1 8.9780 -3.6224 -1.5193 45 1 7.3222 -2.9760 -1.4307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753838268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:18 Heat of formation + Delta-G solvation = -63.700490 kcal Electronic energy + Delta-G solvation = -27704.719908 eV Core-core repulsion = 23748.038364 eV Total energy + Delta-G solvation = -3956.681544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.73717 -40.28419 -38.85118 -38.68885 -37.37764 -35.22531 -35.06051 -32.79610 -32.32954 -31.37971 -29.21343 -28.14908 -27.92549 -25.85907 -24.64608 -23.83823 -23.26733 -21.57192 -20.32518 -19.96027 -19.33283 -18.20411 -17.82271 -17.01850 -16.97057 -16.75323 -16.35397 -16.11909 -16.03972 -15.48446 -15.23213 -14.94581 -14.83453 -14.73271 -14.44375 -14.23297 -14.15972 -13.92414 -13.59806 -13.00017 -12.99534 -12.86253 -12.83024 -12.66915 -12.56022 -12.40292 -12.17358 -12.12005 -12.06977 -11.88260 -11.77160 -11.61004 -11.21859 -11.01236 -10.83700 -10.17813 -9.96834 -9.40466 -9.27571 -7.97227 -5.29750 -0.47084 0.15843 0.88914 1.39135 1.41816 1.47762 1.71651 2.16922 2.22410 2.50399 2.62007 3.35107 3.54218 3.56835 3.68522 3.84621 3.89609 3.93590 4.20698 4.23832 4.28532 4.31484 4.35062 4.44016 4.45394 4.49640 4.66617 4.71796 4.80738 4.89288 4.92433 4.99747 5.03306 5.10733 5.14968 5.20795 5.31383 5.37778 5.46386 5.57573 5.65906 5.85444 6.23061 6.26044 6.56407 7.11910 7.22174 7.86815 8.05964 9.24121 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010209 B = 0.003682 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.055002 B = 7603.750610 C = 9556.877661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.304 6.304 3 C 0.187 3.813 4 C -0.209 4.209 5 C 0.029 3.971 6 Cl -0.048 7.048 7 C -0.157 4.157 8 C -0.033 4.033 9 C -0.191 4.191 10 C 0.555 3.445 11 O -0.560 6.560 12 N -0.714 5.714 13 C 0.118 3.882 14 C 0.176 3.824 15 H 0.059 0.941 16 N -0.743 5.743 17 C -0.216 4.216 18 H 0.064 0.936 19 C -0.051 4.051 20 N -0.981 5.981 21 Si 0.938 3.062 22 H -0.289 1.289 23 H -0.253 1.253 24 H -0.299 1.299 25 C -0.108 4.108 26 C -0.141 4.141 27 C -0.139 4.139 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.169 0.831 32 H 0.160 0.840 33 H 0.151 0.849 34 H 0.408 0.592 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.363 0.637 38 H 0.255 0.745 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.036 0.964 44 H 0.059 0.941 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.693 -2.263 6.333 22.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.215 6.215 3 C 0.138 3.862 4 C -0.228 4.228 5 C 0.002 3.998 6 Cl -0.019 7.019 7 C -0.176 4.176 8 C -0.052 4.052 9 C -0.195 4.195 10 C 0.343 3.657 11 O -0.441 6.441 12 N -0.367 5.367 13 C -0.006 4.006 14 C 0.067 3.933 15 H 0.077 0.923 16 N -0.386 5.386 17 C -0.347 4.347 18 H 0.082 0.918 19 C -0.243 4.243 20 N -0.631 5.631 21 Si 0.767 3.233 22 H -0.216 1.216 23 H -0.178 1.178 24 H -0.226 1.226 25 C -0.129 4.129 26 C -0.199 4.199 27 C -0.196 4.196 28 H 0.090 0.910 29 H 0.134 0.866 30 H 0.093 0.907 31 H 0.186 0.814 32 H 0.178 0.822 33 H 0.169 0.831 34 H 0.246 0.754 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.196 0.804 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.078 0.922 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.907 -3.015 6.429 23.030 hybrid contribution -0.007 0.950 -1.259 1.578 sum -21.914 -2.065 5.170 22.610 Atomic orbital electron populations 1.23521 0.76268 1.05921 1.02854 1.86381 1.23440 1.25250 1.86454 1.18964 0.90611 0.85249 0.91348 1.21218 1.01962 0.89407 1.10224 1.20964 0.92090 0.87870 0.98916 1.98395 1.71899 1.35211 1.96374 1.21134 0.91515 1.00233 1.04677 1.21351 1.01063 0.89875 0.92874 1.19538 0.91468 0.94174 1.14293 1.18194 0.82260 0.88767 0.76489 1.90761 1.72272 1.29782 1.51240 1.45947 1.05401 1.11101 1.74202 1.21759 0.89884 0.86418 1.02504 1.20634 0.91206 0.90608 0.90829 0.92318 1.42768 1.32869 1.45139 1.17836 1.18960 1.03198 1.11434 1.01072 0.91841 1.25239 0.99260 0.99058 1.00731 1.69851 1.32102 1.28190 1.33005 0.85678 0.80257 0.76356 0.81045 1.21605 1.17810 1.22577 1.21577 0.99719 0.95610 0.95999 1.21845 1.02005 0.99031 0.97024 1.21756 1.01245 0.99548 0.97092 0.90986 0.86625 0.90709 0.81361 0.82235 0.83121 0.75444 0.91795 0.89765 0.80373 0.93555 0.92949 0.91875 0.91939 0.92465 0.94493 0.92195 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.30 -7.96 8.57 -68.72 -0.59 -8.55 16 3 C 0.19 4.75 6.70 22.84 0.15 4.91 16 4 C -0.21 -4.05 8.80 22.36 0.20 -3.85 16 5 C 0.03 0.56 6.32 22.37 0.14 0.70 16 6 Cl -0.05 -0.80 28.94 -2.72 -0.08 -0.88 16 7 C -0.16 -3.22 9.80 22.26 0.22 -3.00 16 8 C -0.03 -0.78 9.53 22.51 0.21 -0.57 16 9 C -0.19 -5.38 5.89 -20.01 -0.12 -5.49 16 10 C 0.55 18.34 7.76 86.68 0.67 19.01 16 11 O -0.56 -21.57 15.16 16.93 0.26 -21.32 16 12 N -0.71 -22.35 5.34 -466.35 -2.49 -24.84 16 13 C 0.12 3.65 4.51 86.38 0.39 4.04 16 14 C 0.18 5.97 2.27 44.99 0.10 6.07 16 15 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 16 N -0.74 -31.08 3.60 -322.95 -1.16 -32.25 16 17 C -0.22 -11.19 10.41 84.03 0.87 -10.31 16 18 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 19 C -0.05 -2.83 5.50 84.86 0.47 -2.36 16 20 N -0.98 -60.03 13.97 21.65 0.30 -59.73 16 21 Si 0.94 43.83 27.74 68.60 1.90 45.74 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.25 -10.73 6.51 99.48 0.65 -10.08 16 24 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 25 C -0.11 -3.36 2.91 -10.79 -0.03 -3.39 16 26 C -0.14 -3.43 8.84 71.98 0.64 -2.79 16 27 C -0.14 -4.20 8.69 71.98 0.63 -3.57 16 28 H 0.07 0.81 7.66 -2.39 -0.02 0.79 16 29 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 31 H 0.17 2.29 6.30 -2.91 -0.02 2.27 16 32 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.15 3.44 6.40 -2.91 -0.02 3.42 16 34 H 0.41 12.48 6.17 -92.71 -0.57 11.91 16 35 H 0.06 2.06 6.18 -2.38 -0.01 2.05 16 36 H 0.08 2.41 6.71 -2.39 -0.02 2.39 16 37 H 0.36 15.27 5.65 -92.71 -0.52 14.75 16 38 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 1.42 6.54 -2.39 -0.02 1.41 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.04 1.29 7.60 -2.39 -0.02 1.27 16 44 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.06 1.65 6.32 -2.39 -0.02 1.63 16 Total: -1.00 -68.77 378.20 3.68 -65.09 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: -0.12 Total: 36.11 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 5.66 Total: 0.61 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -3.35 Total: -116.81 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.33 Total: -29.86 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.90 Total: 45.74 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal Total: -68.77 3.68 -65.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753838268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.388 kcal (2) G-P(sol) polarization free energy of solvation -68.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds