Wall clock time and date at job start Sat Apr 11 2020 05:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47420 * 2 1 4 4 C 1.52999 * 109.47138 * 119.99980 * 2 1 3 5 5 H 1.09010 * 109.47158 * 184.99916 * 4 2 1 6 6 C 1.52996 * 109.47208 * 65.00400 * 4 2 1 7 7 N 1.46500 * 109.47364 * 184.99986 * 6 4 2 8 8 C 1.34779 * 120.00169 * 179.97438 * 7 6 4 9 9 O 1.21282 * 119.99922 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.00037 * 180.02562 * 8 7 6 11 11 O 1.42905 * 109.46972 * 180.02562 * 10 8 7 12 12 C 1.35919 * 117.00019 * 180.02562 * 11 10 8 13 13 C 1.38724 * 120.04013 * 359.72155 * 12 11 10 14 14 C 1.38146 * 119.95459 * 179.79050 * 13 12 11 15 15 C 1.38362 * 120.04558 * 0.46631 * 14 13 12 16 16 Cl 1.73601 * 119.96015 * 179.76526 * 15 14 13 17 17 C 1.38371 * 120.08168 * 359.78811 * 15 14 13 18 18 C 1.38138 * 120.04326 * 359.97438 * 17 15 14 19 19 N 1.46499 * 109.47482 * 305.00004 * 4 2 1 20 20 C 1.36941 * 120.00007 * 274.99990 * 19 4 2 21 21 H 1.08000 * 119.99814 * 0.02562 * 20 19 4 22 22 C 1.38812 * 119.99820 * 179.97438 * 20 19 4 23 23 N 1.31622 * 119.99961 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99965 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47087 * 90.00461 * 24 22 20 26 26 H 1.48497 * 109.47504 * 210.00668 * 24 22 20 27 27 H 1.48507 * 109.47255 * 330.00947 * 24 22 20 28 28 H 1.08995 * 109.47006 * 299.99837 * 1 2 3 29 29 H 1.08998 * 109.46693 * 59.99721 * 1 2 3 30 30 H 1.09000 * 109.46850 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47364 * 240.00164 * 2 1 3 32 32 H 1.09003 * 109.46718 * 59.99769 * 3 2 1 33 33 H 1.09002 * 109.47742 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47359 * 300.00390 * 3 2 1 35 35 H 1.09004 * 109.47694 * 64.99732 * 6 4 2 36 36 H 1.09004 * 109.46785 * 304.99831 * 6 4 2 37 37 H 0.96996 * 119.99986 * 359.97438 * 7 6 4 38 38 H 1.09000 * 109.47247 * 60.00371 * 10 8 7 39 39 H 1.09001 * 109.47358 * 299.99798 * 10 8 7 40 40 H 1.07996 * 120.02535 * 0.02562 * 13 12 11 41 41 H 1.08003 * 119.97910 * 180.22530 * 14 13 12 42 42 H 1.07997 * 119.97765 * 179.97438 * 17 15 14 43 43 H 1.08000 * 120.02355 * 179.97438 * 18 17 15 44 44 H 0.97001 * 119.99715 * 94.99429 * 19 4 2 45 45 H 0.96999 * 119.99415 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1264 -0.6443 1.2951 6 6 1.6353 -2.1954 1.1879 7 7 2.0184 -2.8594 2.4364 8 6 1.7589 -4.1705 2.6096 9 8 1.2085 -4.8009 1.7317 10 6 2.1524 -4.8533 3.8941 11 8 1.7746 -6.2303 3.8367 12 6 2.0596 -6.9942 4.9242 13 6 2.6951 -6.4311 6.0212 14 6 2.9801 -7.2081 7.1273 15 6 2.6408 -8.5495 7.1376 16 17 3.0054 -9.5253 8.5263 17 6 2.0115 -9.1142 6.0423 18 6 1.7205 -8.3393 4.9363 19 7 1.4559 -0.1037 2.4424 20 6 2.0442 1.0002 2.9998 21 1 2.9386 1.4157 2.5595 22 6 1.4904 1.5856 4.1300 23 7 0.4002 1.0794 4.6663 24 14 2.2933 3.0909 4.8908 25 1 1.7228 4.3182 4.2796 26 1 2.0384 3.1019 6.3536 27 1 3.7571 3.0494 4.6437 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 2.1409 -2.6766 0.3506 36 1 0.5563 -2.2707 1.0527 37 1 2.4589 -2.3554 3.1384 38 1 1.6468 -4.3720 4.7312 39 1 3.2314 -4.7784 4.0296 40 1 2.9635 -5.3851 6.0121 41 1 3.4716 -6.7693 7.9830 42 1 1.7478 -10.1614 6.0520 43 1 1.2297 -8.7805 4.0814 44 1 0.6524 -0.4767 2.8376 45 1 0.0135 1.4883 5.4563 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753844129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:21 Heat of formation + Delta-G solvation = -52.173179 kcal Electronic energy + Delta-G solvation = -26596.862914 eV Core-core repulsion = 22640.681232 eV Total energy + Delta-G solvation = -3956.181682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -40.58870 -39.37315 -37.88128 -37.22009 -36.36874 -33.99073 -32.97729 -31.57026 -30.59361 -30.13502 -28.94206 -27.23716 -26.35889 -23.85600 -23.24423 -22.59163 -21.94062 -20.32823 -18.86691 -18.65659 -17.55917 -17.00128 -16.80596 -16.48823 -15.98379 -15.50232 -15.16488 -14.79332 -14.48407 -14.29070 -14.00169 -13.85250 -13.63843 -13.40029 -13.20170 -13.09684 -12.87253 -12.48111 -12.28956 -12.17567 -11.81830 -11.59648 -11.35958 -11.07242 -11.03939 -11.00479 -10.92185 -10.87801 -10.60068 -10.34002 -10.19224 -9.98523 -9.69357 -9.52986 -9.43975 -9.00464 -8.76209 -8.40573 -7.10316 -5.89153 -3.18275 0.90220 0.93962 1.89894 2.51558 2.71320 3.31670 3.34081 3.40289 3.42174 3.71390 4.39782 4.47482 4.49703 4.69971 4.84916 4.90558 4.98183 5.05167 5.18963 5.30180 5.36407 5.46041 5.58907 5.66466 5.68076 5.78210 5.81772 5.92260 5.94657 6.03620 6.16820 6.23719 6.29656 6.35673 6.47708 6.58091 6.63118 6.76385 6.82327 7.02436 7.04049 7.24590 7.59908 7.74182 8.28061 8.37365 9.40522 9.94583 10.30794 11.32454 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012708 B = 0.002273 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.864486 B =12317.063089 C =14133.323780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.142 4.142 4 C 0.167 3.833 5 H 0.054 0.946 6 C 0.114 3.886 7 N -0.706 5.706 8 C 0.513 3.487 9 O -0.532 6.532 10 C 0.038 3.962 11 O -0.285 6.285 12 C 0.140 3.860 13 C -0.199 4.199 14 C -0.067 4.067 15 C -0.077 4.077 16 Cl -0.076 7.076 17 C -0.070 4.070 18 C -0.139 4.139 19 N -0.718 5.718 20 C -0.237 4.237 21 H 0.073 0.927 22 C -0.010 4.010 23 N -0.929 5.929 24 Si 0.902 3.098 25 H -0.290 1.290 26 H -0.293 1.293 27 H -0.282 1.282 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.033 0.967 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.412 0.588 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.387 -16.051 1.468 16.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.057 3.943 5 H 0.072 0.928 6 C -0.010 4.010 7 N -0.360 5.360 8 C 0.297 3.703 9 O -0.408 6.408 10 C -0.040 4.040 11 O -0.196 6.196 12 C 0.094 3.906 13 C -0.218 4.218 14 C -0.086 4.086 15 C -0.104 4.104 16 Cl -0.047 7.047 17 C -0.089 4.089 18 C -0.157 4.157 19 N -0.360 5.360 20 C -0.368 4.368 21 H 0.091 0.909 22 C -0.206 4.206 23 N -0.577 5.577 24 Si 0.733 3.267 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.208 1.208 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.248 0.752 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.159 0.841 41 H 0.154 0.846 42 H 0.157 0.843 43 H 0.160 0.840 44 H 0.220 0.780 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.038 -16.487 0.837 17.260 hybrid contribution 0.443 1.227 1.224 1.789 sum 5.481 -15.260 2.061 16.345 Atomic orbital electron populations 1.21774 0.95643 1.00651 1.01761 1.21614 0.96226 0.97184 0.97888 1.21840 0.99547 0.96352 1.02170 1.20560 0.96943 0.88249 0.88556 0.92771 1.21786 1.00795 0.93446 0.84953 1.45808 1.61035 1.08555 1.20564 1.19846 0.79876 0.82682 0.87865 1.90723 1.41771 1.64805 1.43524 1.22590 1.01803 0.81014 0.98640 1.86177 1.76831 1.20340 1.36298 1.19162 0.93879 0.91290 0.86271 1.21317 1.05003 1.01437 0.94034 1.20854 0.97879 0.91540 0.98292 1.20782 1.06450 0.92531 0.90621 1.98362 1.93668 1.70785 1.41898 1.20847 0.96670 1.00319 0.91051 1.20406 1.04524 0.90931 0.99878 1.42434 1.31920 1.33212 1.28425 1.19192 1.07113 1.03900 1.06609 0.90914 1.24715 0.97786 0.99457 0.98663 1.69655 1.21920 1.42209 1.23903 0.86284 0.78623 0.83299 0.78517 1.21773 1.21890 1.20805 0.90962 0.94372 0.93781 0.93209 0.89585 0.94136 0.94808 0.91745 0.91203 0.75185 0.88359 0.88836 0.84145 0.84554 0.84273 0.83992 0.78032 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.74 37.16 0.32 -2.00 16 2 C -0.11 -1.73 2.74 -90.62 -0.25 -1.98 16 3 C -0.14 -2.39 8.46 37.16 0.31 -2.08 16 4 C 0.17 2.85 2.28 -67.93 -0.16 2.70 16 5 H 0.05 0.93 8.08 -51.92 -0.42 0.51 16 6 C 0.11 1.80 5.10 -4.04 -0.02 1.78 16 7 N -0.71 -10.56 5.39 -60.29 -0.32 -10.89 16 8 C 0.51 7.91 7.91 -10.99 -0.09 7.83 16 9 O -0.53 -10.22 16.50 -14.35 -0.24 -10.45 16 10 C 0.04 0.45 5.22 36.01 0.19 0.64 16 11 O -0.28 -3.86 9.67 -39.40 -0.38 -4.25 16 12 C 0.14 1.61 6.69 -39.22 -0.26 1.35 16 13 C -0.20 -1.97 9.04 -39.44 -0.36 -2.33 16 14 C -0.07 -0.62 9.82 -39.57 -0.39 -1.01 16 15 C -0.08 -0.74 6.32 -39.49 -0.25 -0.98 16 16 Cl -0.08 -0.68 28.95 -51.86 -1.50 -2.18 16 17 C -0.07 -0.63 9.82 -39.57 -0.39 -1.02 16 18 C -0.14 -1.41 9.99 -39.44 -0.39 -1.81 16 19 N -0.72 -15.00 3.53 -53.42 -0.19 -15.19 16 20 C -0.24 -5.63 7.75 -15.06 -0.12 -5.75 16 21 H 0.07 1.70 7.32 -52.49 -0.38 1.32 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -25.46 13.06 55.49 0.72 -24.73 16 24 Si 0.90 20.66 29.55 -169.99 -5.02 15.64 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 28 H 0.07 1.40 7.47 -51.93 -0.39 1.02 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.04 0.69 6.46 -51.93 -0.34 0.35 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.72 5.99 -51.93 -0.31 1.41 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.19 6.34 -51.93 -0.33 0.86 16 37 H 0.41 5.98 8.14 -40.82 -0.33 5.65 16 38 H 0.10 1.04 7.67 -51.93 -0.40 0.64 16 39 H 0.09 0.86 7.65 -51.93 -0.40 0.46 16 40 H 0.14 1.16 6.30 -52.49 -0.33 0.83 16 41 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 42 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 43 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 44 H 0.39 8.91 7.80 -40.82 -0.32 8.59 16 45 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 385.78 15.07 5.81 5.81 Total: -1.00 -28.93 385.78 -9.52 -38.45 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -6.46 Total: 12.81 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.94 Total: -5.02 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.21 Total: -50.81 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.62 Total: -14.70 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.93 -9.52 -38.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753844129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.724 kcal (2) G-P(sol) polarization free energy of solvation -28.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds