Wall clock time and date at job start Sat Apr 11 2020 05:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47384 * 2 1 4 4 S 1.81405 * 109.46947 * 119.99972 * 2 1 3 5 5 O 1.42103 * 108.57684 * 70.51035 * 4 2 1 6 6 O 1.42099 * 108.57735 * 299.48180 * 4 2 1 7 7 C 1.81397 * 101.91981 * 184.99694 * 4 2 1 8 8 C 1.50698 * 109.47334 * 180.02562 * 7 4 2 9 9 O 1.21287 * 119.99499 * 359.97438 * 8 7 4 10 10 N 1.34777 * 120.00377 * 180.02562 * 8 7 4 11 11 C 1.46497 * 119.99928 * 359.97438 * 10 8 7 12 12 C 1.50698 * 109.46886 * 270.00390 * 11 10 8 13 13 H 1.07994 * 120.00600 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99702 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00197 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 120.00061 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.46778 * 89.99805 * 16 14 12 18 18 H 1.48499 * 109.47209 * 209.99860 * 16 14 12 19 19 H 1.48496 * 109.46893 * 329.99803 * 16 14 12 20 20 C 1.46504 * 119.99689 * 179.97438 * 10 8 7 21 21 C 1.50707 * 109.46935 * 90.00167 * 20 10 8 22 22 C 1.38227 * 119.62059 * 95.01845 * 21 20 10 23 23 C 1.38627 * 119.15702 * 179.74122 * 22 21 20 24 24 C 1.38669 * 118.42389 * 0.47826 * 23 22 21 25 25 C 1.38186 * 119.16143 * 359.49762 * 24 23 22 26 26 N 1.31856 * 119.61137 * 274.99275 * 21 20 10 27 27 H 1.09008 * 109.46833 * 300.00407 * 1 2 3 28 28 H 1.09000 * 109.47025 * 59.99642 * 1 2 3 29 29 H 1.08995 * 109.47547 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47117 * 239.99254 * 2 1 3 31 31 H 1.08995 * 109.47270 * 59.99732 * 3 2 1 32 32 H 1.08998 * 109.47088 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.46930 * 299.99862 * 3 2 1 34 34 H 1.08996 * 109.47364 * 59.99861 * 7 4 2 35 35 H 1.09001 * 109.47295 * 299.99607 * 7 4 2 36 36 H 1.08998 * 109.47243 * 30.00215 * 11 10 8 37 37 H 1.08997 * 109.46980 * 150.00484 * 11 10 8 38 38 H 0.96992 * 120.00111 * 179.97438 * 15 14 12 39 39 H 1.08997 * 109.47679 * 329.99634 * 20 10 8 40 40 H 1.09003 * 109.46652 * 209.99594 * 20 10 8 41 41 H 1.07998 * 120.41916 * 359.95342 * 22 21 20 42 42 H 1.08008 * 120.78688 * 180.22921 * 23 22 21 43 43 H 1.08002 * 120.42244 * 179.78279 * 24 23 22 44 44 H 1.07996 * 119.61757 * 180.25243 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1346 -0.8552 1.4812 5 8 1.8618 -2.2431 1.3456 6 8 1.6605 -0.1636 2.6284 7 6 3.9265 -0.6032 1.3540 8 6 4.6106 -1.2602 2.5251 9 8 3.9537 -1.8408 3.3633 10 7 5.9520 -1.2017 2.6417 11 6 6.7453 -0.4999 1.6295 12 6 7.1343 -1.4643 0.5388 13 1 6.8223 -2.4967 0.5942 14 6 7.8886 -1.0285 -0.5299 15 7 8.2286 -1.8702 -1.4816 16 14 8.4290 0.7572 -0.6254 17 1 9.7438 0.9130 0.0470 18 1 8.5498 1.1623 -2.0489 19 1 7.4228 1.6155 0.0498 20 6 6.6168 -1.8399 3.7805 21 6 6.9619 -3.2638 3.4273 22 6 8.2225 -3.5617 2.9449 23 6 8.5314 -4.8754 2.6281 24 6 7.5533 -5.8433 2.7997 25 6 6.3152 -5.4703 3.2872 26 7 6.0579 -4.2110 3.5826 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5140 -0.8899 31 1 1.6768 1.9563 0.8899 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 4.1445 0.4647 1.3578 35 1 4.2907 -1.0451 0.4265 36 1 6.1551 0.3114 1.2036 37 1 7.6443 -0.0918 2.0913 38 1 8.7589 -1.5635 -2.2336 39 1 5.9498 -1.8308 4.6425 40 1 7.5290 -1.2940 4.0213 41 1 8.9586 -2.7814 2.8197 42 1 9.5095 -5.1383 2.2528 43 1 7.7579 -6.8762 2.5597 44 1 5.5493 -6.2187 3.4275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103438891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:13 Heat of formation + Delta-G solvation = -64.224202 kcal Electronic energy + Delta-G solvation = -28653.402383 eV Core-core repulsion = 24698.741836 eV Total energy + Delta-G solvation = -3954.660547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.93696 -38.95813 -36.71129 -35.74571 -35.45173 -35.05936 -32.86526 -32.01049 -31.59902 -29.99265 -28.29576 -27.42869 -25.84872 -23.05570 -22.75240 -22.54886 -21.73051 -19.06260 -18.34818 -17.38621 -17.21086 -16.44158 -16.32404 -16.07625 -15.77533 -15.52933 -15.22997 -14.97704 -14.79729 -14.28760 -14.09840 -13.43517 -13.34035 -13.21090 -13.09603 -12.95259 -12.71028 -12.50558 -12.42515 -12.14811 -12.09051 -11.75418 -11.70801 -11.67342 -11.54892 -11.50515 -11.33046 -11.09729 -10.88024 -10.61038 -10.40588 -10.10248 -9.77711 -9.59191 -9.32026 -8.93172 -8.86275 -8.50730 -7.96226 -6.33168 -4.35916 0.12154 1.56285 1.83092 2.95937 3.03659 3.04426 3.11263 3.15367 3.48873 3.97805 4.12943 4.14165 4.40825 4.49270 4.60076 4.76104 4.86024 4.96366 4.97368 5.18330 5.22347 5.28344 5.31096 5.41120 5.45192 5.51331 5.60107 5.63942 5.70105 5.79313 5.84294 5.89562 5.94025 6.14525 6.23526 6.25658 6.45580 6.59751 6.67274 7.07815 7.18584 7.29000 7.86231 8.23644 8.55524 8.58649 8.76489 9.24562 10.78805 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009480 B = 0.005260 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.739456 B = 5321.998642 C = 7235.775767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.588 4.588 3 C -0.148 4.148 4 S 2.449 3.551 5 O -0.923 6.923 6 O -0.927 6.927 7 C -0.647 4.647 8 C 0.549 3.451 9 O -0.537 6.537 10 N -0.577 5.577 11 C 0.203 3.797 12 C -0.541 4.541 13 H 0.081 0.919 14 C 0.078 3.922 15 N -0.886 5.886 16 Si 0.867 3.133 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.264 1.264 20 C 0.170 3.830 21 C 0.116 3.884 22 C -0.127 4.127 23 C -0.079 4.079 24 C -0.177 4.177 25 C 0.088 3.912 26 N -0.460 5.460 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.139 0.861 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.154 0.846 35 H 0.170 0.830 36 H 0.037 0.963 37 H 0.034 0.966 38 H 0.267 0.733 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.691 3.755 3.031 6.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.696 4.696 3 C -0.206 4.206 4 S 2.627 3.373 5 O -0.920 6.920 6 O -0.924 6.924 7 C -0.776 4.776 8 C 0.334 3.666 9 O -0.415 6.415 10 N -0.307 5.307 11 C 0.082 3.918 12 C -0.579 4.579 13 H 0.099 0.901 14 C -0.126 4.126 15 N -0.523 5.523 16 Si 0.693 3.307 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.189 1.189 20 C 0.046 3.954 21 C -0.023 4.023 22 C -0.148 4.148 23 C -0.105 4.105 24 C -0.197 4.197 25 C -0.069 4.069 26 N -0.169 5.169 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.157 0.843 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.172 0.828 35 H 0.188 0.812 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.204 3.247 4.249 8.191 hybrid contribution 2.067 0.982 -1.836 2.934 sum -4.137 4.229 2.413 6.389 Atomic orbital electron populations 1.21605 0.89989 1.03786 1.04438 1.30216 1.07026 1.10030 1.22364 1.21769 1.01999 0.92127 1.04718 1.07565 0.77104 0.75930 0.76728 1.93564 1.82596 1.29576 1.86268 1.93523 1.77993 1.75797 1.45119 1.30790 1.25997 1.11701 1.09090 1.18892 0.83202 0.79870 0.84594 1.90814 1.64162 1.44131 1.42424 1.47686 1.05135 1.52852 1.25022 1.19970 0.91289 0.93159 0.87402 1.21365 1.34453 0.97835 1.04272 0.90123 1.24873 0.95263 0.97154 0.95275 1.69891 1.37051 1.34761 1.10569 0.87007 0.79994 0.85703 0.77987 1.19829 1.20871 1.18858 1.20209 0.98238 0.87374 0.89529 1.21490 0.89649 0.95554 0.95620 1.21904 0.97987 0.97019 0.97865 1.21474 0.99452 0.93070 0.96526 1.22048 0.95259 1.00371 1.01992 1.22646 0.95358 0.93129 0.95790 1.67540 1.33710 1.00710 1.14972 0.90747 0.90182 0.90989 0.84279 0.90500 0.90756 0.90295 0.82819 0.81241 0.94510 0.94806 0.92311 0.88656 0.89058 0.84835 0.85377 0.85553 0.83454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.19 37.16 0.34 -1.08 16 2 C -0.59 -6.67 3.35 -26.73 -0.09 -6.76 16 3 C -0.15 -1.41 8.90 37.16 0.33 -1.08 16 4 S 2.45 40.56 3.50 -107.50 -0.38 40.18 16 5 O -0.92 -18.93 17.95 -59.54 -1.07 -20.00 16 6 O -0.93 -17.38 17.91 -59.52 -1.07 -18.44 16 7 C -0.65 -10.89 4.23 36.00 0.15 -10.74 16 8 C 0.55 11.48 7.69 -10.99 -0.08 11.40 16 9 O -0.54 -12.65 15.20 2.54 0.04 -12.61 16 10 N -0.58 -11.56 2.44 -176.43 -0.43 -11.99 16 11 C 0.20 4.12 4.08 -5.20 -0.02 4.10 16 12 C -0.54 -13.16 9.69 -34.44 -0.33 -13.49 16 13 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 14 C 0.08 1.96 5.47 -17.82 -0.10 1.86 16 15 N -0.89 -24.22 13.96 55.43 0.77 -23.45 16 16 Si 0.87 18.22 27.47 -169.99 -4.67 13.55 16 17 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.26 -5.10 6.54 56.52 0.37 -4.73 16 20 C 0.17 3.09 5.76 -5.19 -0.03 3.06 16 21 C 0.12 2.24 6.36 -82.58 -0.53 1.72 16 22 C -0.13 -2.28 9.58 -39.44 -0.38 -2.65 16 23 C -0.08 -1.29 10.18 -39.28 -0.40 -1.69 16 24 C -0.18 -2.76 10.11 -39.44 -0.40 -3.16 16 25 C 0.09 1.54 11.18 -17.55 -0.20 1.35 16 26 N -0.46 -9.42 10.27 -9.47 -0.10 -9.51 16 27 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.14 1.35 8.14 -51.92 -0.42 0.93 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.65 6.39 -51.93 -0.33 0.32 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.15 2.01 6.03 -51.93 -0.31 1.69 16 35 H 0.17 2.79 8.00 -51.92 -0.42 2.37 16 36 H 0.04 0.70 5.50 -51.93 -0.29 0.41 16 37 H 0.03 0.65 7.32 -51.93 -0.38 0.27 16 38 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 39 H 0.10 1.73 7.42 -51.93 -0.39 1.35 16 40 H 0.09 1.35 7.79 -51.93 -0.40 0.95 16 41 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 42 H 0.13 1.78 8.06 -52.48 -0.42 1.35 16 43 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 44 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 381.13 15.07 5.74 5.74 Total: -1.00 -36.16 381.13 -9.22 -45.38 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.33 Total: 8.31 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -1.73 Total: -17.16 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.25 Total: -44.95 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -2.10 Total: -51.05 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -4.67 Total: 13.55 kcal Atomic # 16 Polarization: 40.56 SS G_CDS: -0.38 Total: 40.18 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.16 -9.22 -45.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103438891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.844 kcal (2) G-P(sol) polarization free energy of solvation -36.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds