Wall clock time and date at job start Sat Apr 11 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47384 * 2 1 4 4 S 1.81405 * 109.46947 * 119.99972 * 2 1 3 5 5 O 1.42103 * 108.57684 * 70.51035 * 4 2 1 6 6 O 1.42099 * 108.57735 * 299.48180 * 4 2 1 7 7 C 1.81397 * 101.91981 * 184.99694 * 4 2 1 8 8 C 1.50698 * 109.47334 * 180.02562 * 7 4 2 9 9 O 1.21287 * 119.99499 * 359.97438 * 8 7 4 10 10 N 1.34777 * 120.00377 * 180.02562 * 8 7 4 11 11 C 1.46497 * 119.99928 * 359.97438 * 10 8 7 12 12 C 1.50698 * 109.46886 * 270.00390 * 11 10 8 13 13 H 1.07994 * 120.00600 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99702 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00197 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 120.00061 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.46778 * 89.99805 * 16 14 12 18 18 H 1.48499 * 109.47209 * 209.99860 * 16 14 12 19 19 H 1.48496 * 109.46893 * 329.99803 * 16 14 12 20 20 C 1.46504 * 119.99689 * 179.97438 * 10 8 7 21 21 C 1.50707 * 109.46935 * 90.00167 * 20 10 8 22 22 C 1.38227 * 119.62059 * 95.01845 * 21 20 10 23 23 C 1.38627 * 119.15702 * 179.74122 * 22 21 20 24 24 C 1.38669 * 118.42389 * 0.47826 * 23 22 21 25 25 C 1.38186 * 119.16143 * 359.49762 * 24 23 22 26 26 N 1.31856 * 119.61137 * 274.99275 * 21 20 10 27 27 H 1.09008 * 109.46833 * 300.00407 * 1 2 3 28 28 H 1.09000 * 109.47025 * 59.99642 * 1 2 3 29 29 H 1.08995 * 109.47547 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47117 * 239.99254 * 2 1 3 31 31 H 1.08995 * 109.47270 * 59.99732 * 3 2 1 32 32 H 1.08998 * 109.47088 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.46930 * 299.99862 * 3 2 1 34 34 H 1.08996 * 109.47364 * 59.99861 * 7 4 2 35 35 H 1.09001 * 109.47295 * 299.99607 * 7 4 2 36 36 H 1.08998 * 109.47243 * 30.00215 * 11 10 8 37 37 H 1.08997 * 109.46980 * 150.00484 * 11 10 8 38 38 H 0.96992 * 120.00111 * 179.97438 * 15 14 12 39 39 H 1.08997 * 109.47679 * 329.99634 * 20 10 8 40 40 H 1.09003 * 109.46652 * 209.99594 * 20 10 8 41 41 H 1.07998 * 120.41916 * 359.95342 * 22 21 20 42 42 H 1.08008 * 120.78688 * 180.22921 * 23 22 21 43 43 H 1.08002 * 120.42244 * 179.78279 * 24 23 22 44 44 H 1.07996 * 119.61757 * 180.25243 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1346 -0.8552 1.4812 5 8 1.8618 -2.2431 1.3456 6 8 1.6605 -0.1636 2.6284 7 6 3.9265 -0.6032 1.3540 8 6 4.6106 -1.2602 2.5251 9 8 3.9537 -1.8408 3.3633 10 7 5.9520 -1.2017 2.6417 11 6 6.7453 -0.4999 1.6295 12 6 7.1343 -1.4643 0.5388 13 1 6.8223 -2.4967 0.5942 14 6 7.8886 -1.0285 -0.5299 15 7 8.2286 -1.8702 -1.4816 16 14 8.4290 0.7572 -0.6254 17 1 9.7438 0.9130 0.0470 18 1 8.5498 1.1623 -2.0489 19 1 7.4228 1.6155 0.0498 20 6 6.6168 -1.8399 3.7805 21 6 6.9619 -3.2638 3.4273 22 6 8.2225 -3.5617 2.9449 23 6 8.5314 -4.8754 2.6281 24 6 7.5533 -5.8433 2.7997 25 6 6.3152 -5.4703 3.2872 26 7 6.0579 -4.2110 3.5826 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5140 -0.8899 31 1 1.6768 1.9563 0.8899 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 4.1445 0.4647 1.3578 35 1 4.2907 -1.0451 0.4265 36 1 6.1551 0.3114 1.2036 37 1 7.6443 -0.0918 2.0913 38 1 8.7589 -1.5635 -2.2336 39 1 5.9498 -1.8308 4.6425 40 1 7.5290 -1.2940 4.0213 41 1 8.9586 -2.7814 2.8197 42 1 9.5095 -5.1383 2.2528 43 1 7.7579 -6.8762 2.5597 44 1 5.5493 -6.2187 3.4275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103438891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:12 Heat of formation + Delta-G solvation = -91.002105 kcal Electronic energy + Delta-G solvation = -28654.563560 eV Core-core repulsion = 24698.741836 eV Total energy + Delta-G solvation = -3955.821724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.39676 -40.46215 -38.08105 -37.18328 -36.96908 -35.98654 -34.64894 -33.45618 -33.02679 -31.33637 -30.01698 -28.26791 -27.24816 -24.59980 -24.23553 -23.65161 -23.09007 -20.53188 -19.66996 -19.11017 -18.62794 -17.89155 -17.72702 -17.40820 -17.15017 -16.92276 -16.59940 -16.44200 -16.02708 -15.80401 -15.40463 -14.80967 -14.70928 -14.40829 -14.23636 -14.16688 -14.02676 -14.01314 -13.71984 -13.53149 -13.24713 -13.17574 -13.15007 -13.04756 -12.79205 -12.63530 -12.42831 -12.36019 -12.32034 -12.06695 -11.86771 -11.65458 -11.22987 -11.13530 -10.74050 -10.71556 -10.35670 -9.90259 -9.55860 -8.22994 -6.30919 -1.11417 0.20114 0.46569 1.44366 1.46300 1.46633 1.54915 1.73294 2.05074 2.38484 2.71713 2.98859 3.02781 3.10878 3.39038 3.46653 3.58477 3.62395 3.86714 3.97605 4.03331 4.19130 4.22226 4.30061 4.33798 4.46009 4.55378 4.63114 4.64427 4.69656 4.74962 4.79787 4.83886 4.87916 4.91349 5.10532 5.23346 5.25308 5.32962 5.45273 5.54025 5.86278 6.16668 6.44573 6.75348 7.01798 7.17583 7.34147 8.92505 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009480 B = 0.005260 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.739456 B = 5321.998642 C = 7235.775767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.548 4.548 3 C -0.159 4.159 4 S 2.428 3.572 5 O -0.981 6.981 6 O -0.962 6.962 7 C -0.649 4.649 8 C 0.531 3.469 9 O -0.574 6.574 10 N -0.577 5.577 11 C 0.203 3.797 12 C -0.530 4.530 13 H 0.026 0.974 14 C 0.025 3.975 15 N -0.940 5.940 16 Si 0.933 3.067 17 H -0.268 1.268 18 H -0.291 1.291 19 H -0.226 1.226 20 C 0.162 3.838 21 C 0.095 3.905 22 C -0.139 4.139 23 C -0.087 4.087 24 C -0.168 4.168 25 C 0.069 3.931 26 N -0.502 5.502 27 H 0.075 0.925 28 H 0.116 0.884 29 H 0.066 0.934 30 H 0.163 0.837 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.194 0.806 35 H 0.171 0.829 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.266 0.734 39 H 0.086 0.914 40 H 0.125 0.875 41 H 0.141 0.859 42 H 0.154 0.846 43 H 0.164 0.836 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.175 6.543 1.727 7.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.662 4.662 3 C -0.217 4.217 4 S 2.612 3.388 5 O -0.978 6.978 6 O -0.959 6.959 7 C -0.777 4.777 8 C 0.318 3.682 9 O -0.456 6.456 10 N -0.306 5.306 11 C 0.082 3.918 12 C -0.568 4.568 13 H 0.045 0.955 14 C -0.174 4.174 15 N -0.579 5.579 16 Si 0.756 3.244 17 H -0.194 1.194 18 H -0.217 1.217 19 H -0.149 1.149 20 C 0.039 3.961 21 C -0.043 4.043 22 C -0.159 4.159 23 C -0.113 4.113 24 C -0.188 4.188 25 C -0.088 4.088 26 N -0.212 5.212 27 H 0.094 0.906 28 H 0.134 0.866 29 H 0.085 0.915 30 H 0.180 0.820 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.127 0.873 34 H 0.212 0.788 35 H 0.189 0.811 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.142 0.858 41 H 0.159 0.841 42 H 0.172 0.828 43 H 0.181 0.819 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.667 6.012 3.025 8.799 hybrid contribution 1.865 0.016 -1.483 2.383 sum -3.802 6.029 1.541 7.292 Atomic orbital electron populations 1.21835 0.88807 1.04198 1.06264 1.29918 1.07745 1.10656 1.17877 1.22003 1.02955 0.90330 1.06437 1.07959 0.76882 0.75319 0.78596 1.93487 1.83162 1.33524 1.87657 1.93466 1.78140 1.75713 1.48552 1.30819 1.26008 1.13784 1.07059 1.19614 0.83571 0.79684 0.85282 1.90788 1.64935 1.45708 1.44145 1.47786 1.05037 1.52597 1.25196 1.20003 0.92601 0.92682 0.86502 1.21342 1.33806 0.96147 1.05530 0.95519 1.25698 0.95188 1.01972 0.94540 1.70064 1.38704 1.37472 1.11693 0.85940 0.80517 0.80130 0.77832 1.19360 1.21715 1.14879 1.20446 0.99287 0.87576 0.88768 1.21673 0.90204 0.95862 0.96607 1.22073 0.97680 0.98157 0.98038 1.21897 1.00827 0.92690 0.95883 1.22421 0.94089 1.02104 1.00192 1.23116 0.96929 0.92784 0.95996 1.67510 1.34985 1.02140 1.16547 0.90605 0.86574 0.91507 0.81973 0.90106 0.89615 0.87253 0.78833 0.81114 0.91954 0.92394 0.92492 0.89605 0.85753 0.84120 0.82786 0.81862 0.81641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.19 71.98 0.66 -2.03 16 2 C -0.55 -10.90 3.35 30.59 0.10 -10.79 16 3 C -0.16 -2.33 8.90 71.98 0.64 -1.69 16 4 S 2.43 81.01 3.50 -56.49 -0.20 80.82 16 5 O -0.98 -42.42 17.95 -125.74 -2.26 -44.67 16 6 O -0.96 -36.82 17.91 -125.76 -2.25 -39.07 16 7 C -0.65 -21.36 4.23 71.24 0.30 -21.06 16 8 C 0.53 22.60 7.69 87.66 0.67 23.28 16 9 O -0.57 -28.45 15.20 -0.18 0.00 -28.45 16 10 N -0.58 -22.99 2.44 -830.49 -2.03 -25.01 16 11 C 0.20 7.81 4.08 85.63 0.35 8.16 16 12 C -0.53 -25.61 9.69 25.60 0.25 -25.36 16 13 H 0.03 1.56 8.06 -2.91 -0.02 1.54 16 14 C 0.03 1.23 5.47 84.65 0.46 1.70 16 15 N -0.94 -51.98 13.96 21.45 0.30 -51.69 16 16 Si 0.93 35.37 27.47 68.60 1.88 37.25 16 17 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 18 H -0.29 -11.40 7.11 99.48 0.71 -10.69 16 19 H -0.23 -7.16 6.54 99.48 0.65 -6.51 16 20 C 0.16 5.98 5.76 85.63 0.49 6.47 16 21 C 0.10 3.79 6.36 42.55 0.27 4.06 16 22 C -0.14 -5.03 9.58 22.36 0.21 -4.81 16 23 C -0.09 -2.80 10.18 22.47 0.23 -2.58 16 24 C -0.17 -5.16 10.11 22.36 0.23 -4.94 16 25 C 0.07 2.47 11.18 84.67 0.95 3.41 16 26 N -0.50 -21.48 10.27 -183.88 -1.89 -23.37 16 27 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.16 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.08 6.39 -2.39 -0.02 1.06 16 33 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.19 4.49 6.03 -2.39 -0.01 4.48 16 35 H 0.17 5.54 8.00 -2.39 -0.02 5.52 16 36 H 0.06 2.10 5.50 -2.39 -0.01 2.09 16 37 H 0.06 1.99 7.32 -2.39 -0.02 1.98 16 38 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 39 H 0.09 3.27 7.42 -2.39 -0.02 3.25 16 40 H 0.12 3.57 7.79 -2.39 -0.02 3.55 16 41 H 0.14 4.70 8.06 -2.91 -0.02 4.68 16 42 H 0.15 4.05 8.06 -2.91 -0.02 4.02 16 43 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 44 H 0.17 5.02 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -84.67 381.13 0.32 -84.34 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: 0.94 Total: 36.02 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 5.82 Total: -26.18 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -3.62 Total: -100.06 kcal Atomic # 8 Polarization: -107.68 SS G_CDS: -4.51 Total: -112.19 kcal Atomic # 14 Polarization: 35.37 SS G_CDS: 1.88 Total: 37.25 kcal Atomic # 16 Polarization: 81.01 SS G_CDS: -0.20 Total: 80.82 kcal Total: -84.67 0.32 -84.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103438891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.661 kcal (2) G-P(sol) polarization free energy of solvation -84.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds