Wall clock time and date at job start Sat Apr 11 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47166 * 2 1 4 4 O 1.21289 * 119.99994 * 359.97438 * 3 2 1 5 5 N 1.34771 * 120.00154 * 180.02562 * 3 2 1 6 6 C 1.39926 * 120.00016 * 185.27417 * 5 3 2 7 7 C 1.38879 * 120.06801 * 213.54214 * 6 5 3 8 8 C 1.38107 * 119.92320 * 180.21118 * 7 6 5 9 9 C 1.38288 * 120.07615 * 359.51471 * 8 7 6 10 10 S 1.76199 * 119.93094 * 180.25545 * 9 8 7 11 11 O 1.42097 * 106.39968 * 203.53787 * 10 9 8 12 12 O 1.42094 * 106.40356 * 336.45726 * 10 9 8 13 13 N 1.65604 * 107.21923 * 89.99967 * 10 9 8 14 14 C 1.46503 * 119.99757 * 270.00047 * 13 10 9 15 15 C 1.46502 * 119.99958 * 89.99716 * 13 10 9 16 16 H 1.08999 * 109.46962 * 0.02562 * 15 13 10 17 17 C 1.52996 * 109.46742 * 120.00100 * 15 13 10 18 18 C 1.50696 * 109.46950 * 240.00166 * 15 13 10 19 19 H 1.07998 * 120.00215 * 0.02562 * 18 15 13 20 20 C 1.37881 * 119.99873 * 180.02562 * 18 15 13 21 21 N 1.31514 * 119.99912 * 180.02562 * 20 18 15 22 22 Si 1.86794 * 119.99792 * 359.97438 * 20 18 15 23 23 H 1.48500 * 109.47173 * 90.00117 * 22 20 18 24 24 H 1.48497 * 109.47393 * 210.00163 * 22 20 18 25 25 H 1.48496 * 109.47494 * 330.00476 * 22 20 18 26 26 C 1.38283 * 120.13617 * 0.27642 * 9 8 7 27 27 C 1.38107 * 120.07258 * 359.95585 * 26 9 8 28 28 H 1.09003 * 109.47161 * 60.00008 * 1 2 3 29 29 H 1.08993 * 109.47244 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47287 * 300.00010 * 1 2 3 31 31 H 1.09002 * 109.46970 * 240.00346 * 2 1 3 32 32 H 1.08994 * 109.47112 * 120.00128 * 2 1 3 33 33 H 0.97004 * 119.99941 * 5.27725 * 5 3 2 34 34 H 1.07995 * 120.03800 * 0.02562 * 7 6 5 35 35 H 1.08002 * 119.96296 * 179.78926 * 8 7 6 36 36 H 1.08993 * 109.46913 * 89.99928 * 14 13 10 37 37 H 1.08997 * 109.46760 * 210.00228 * 14 13 10 38 38 H 1.08999 * 109.47211 * 329.99692 * 14 13 10 39 39 H 1.08999 * 109.47346 * 299.99673 * 17 15 13 40 40 H 1.08999 * 109.47230 * 60.00362 * 17 15 13 41 41 H 1.09002 * 109.46719 * 179.97438 * 17 15 13 42 42 H 0.97005 * 119.99710 * 180.02562 * 21 20 18 43 43 H 1.07999 * 119.95931 * 179.97438 * 26 9 8 44 44 H 1.08000 * 120.03811 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8247 2.9813 0.1109 7 6 4.9898 3.3631 -0.5415 8 6 5.4507 4.6598 -0.4260 9 6 4.7483 5.5803 0.3301 10 16 5.3362 7.2354 0.4694 11 8 4.7870 7.7564 1.6719 12 8 6.7323 7.1886 0.2090 13 7 4.6585 8.1023 -0.7683 14 6 5.3462 8.1973 -2.0583 15 6 3.3712 8.7739 -0.5731 16 1 3.0165 8.5917 0.4413 17 6 3.5431 10.2786 -0.7903 18 6 2.3687 8.2350 -1.5607 19 1 2.6610 7.4686 -2.2632 20 6 1.0781 8.7204 -1.5675 21 7 0.2031 8.2498 -2.4290 22 14 0.5724 10.0456 -0.3519 23 1 0.8144 11.3835 -0.9491 24 1 -0.8704 9.8997 -0.0325 25 1 1.3713 9.9071 0.8921 26 6 3.5855 5.2043 0.9773 27 6 3.1218 3.9079 0.8697 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.9870 0.9333 -0.0782 34 1 5.5363 2.6461 -1.1360 35 1 6.3585 4.9566 -0.9303 36 1 5.0274 7.3770 -2.7013 37 1 5.0997 9.1474 -2.5323 38 1 6.4232 8.1384 -1.9012 39 1 4.2682 10.6684 -0.0759 40 1 3.8979 10.4611 -1.8046 41 1 2.5852 10.7782 -0.6455 42 1 -0.7048 8.5916 -2.4340 43 1 3.0394 5.9254 1.5674 44 1 2.2134 3.6150 1.3751 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103496360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:17 Heat of formation + Delta-G solvation = -70.685841 kcal Electronic energy + Delta-G solvation = -28212.748891 eV Core-core repulsion = 24257.808147 eV Total energy + Delta-G solvation = -3954.940745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.67532 -38.51512 -36.81344 -36.38333 -35.36337 -34.97794 -33.13030 -32.47951 -30.91722 -30.00535 -29.78471 -25.79026 -25.17177 -24.96412 -23.02300 -22.47484 -20.82487 -20.43505 -18.57793 -17.96226 -17.44215 -17.28753 -16.83332 -16.43157 -16.06465 -15.56577 -14.98994 -14.62706 -14.47373 -14.25865 -13.71883 -13.68523 -13.41786 -13.32152 -13.02886 -12.87385 -12.67963 -12.50230 -12.25814 -12.09608 -12.03308 -11.95822 -11.62903 -11.45708 -11.41211 -11.33234 -11.20751 -11.01607 -10.68504 -10.60880 -10.40202 -10.10166 -9.95404 -9.54309 -9.36958 -8.86607 -8.61550 -8.41983 -8.05411 -6.10939 -4.12264 0.80446 1.08481 1.49196 2.37690 2.77888 3.26039 3.39331 3.40462 3.45366 3.79645 4.26803 4.34723 4.37438 4.69068 4.72629 4.76955 4.98020 4.98770 5.17961 5.19654 5.42471 5.50197 5.53443 5.57665 5.60031 5.66446 5.94414 6.01076 6.08116 6.12532 6.21372 6.24756 6.27939 6.34588 6.41461 6.44670 6.56821 6.57743 6.87309 7.00478 7.12911 7.31439 7.36923 7.65595 7.90307 8.47533 8.93416 9.49363 11.01678 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.004430 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.075987 B = 6318.479021 C = 8152.228192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.140 4.140 3 C 0.504 3.496 4 O -0.502 6.502 5 N -0.679 5.679 6 C 0.194 3.806 7 C -0.172 4.172 8 C -0.001 4.001 9 C -0.682 4.682 10 S 2.691 3.309 11 O -0.963 6.963 12 O -0.975 6.975 13 N -0.974 5.974 14 C 0.096 3.904 15 C 0.238 3.762 16 H 0.058 0.942 17 C -0.160 4.160 18 C -0.528 4.528 19 H 0.082 0.918 20 C 0.077 3.923 21 N -0.892 5.892 22 Si 0.875 3.125 23 H -0.276 1.276 24 H -0.294 1.294 25 H -0.260 1.260 26 C 0.015 3.985 27 C -0.142 4.142 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.411 0.589 34 H 0.131 0.869 35 H 0.140 0.860 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.036 0.964 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.265 0.735 43 H 0.143 0.857 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.199 -15.528 3.951 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.180 4.180 3 C 0.292 3.708 4 O -0.374 6.374 5 N -0.325 5.325 6 C 0.099 3.901 7 C -0.193 4.193 8 C -0.021 4.021 9 C -0.768 4.768 10 S 2.781 3.219 11 O -0.953 6.953 12 O -0.965 6.965 13 N -0.813 5.813 14 C -0.049 4.049 15 C 0.133 3.867 16 H 0.076 0.924 17 C -0.219 4.219 18 C -0.566 4.566 19 H 0.100 0.900 20 C -0.127 4.127 21 N -0.529 5.529 22 Si 0.704 3.296 23 H -0.203 1.203 24 H -0.222 1.222 25 H -0.185 1.185 26 C -0.005 4.005 27 C -0.163 4.163 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.247 0.753 34 H 0.148 0.852 35 H 0.158 0.842 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.161 0.839 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.933 -14.621 4.514 17.236 hybrid contribution -0.636 -0.334 -0.053 0.721 sum 7.297 -14.955 4.462 17.228 Atomic orbital electron populations 1.21565 0.92528 1.01822 1.03900 1.21638 0.99118 0.92717 1.04536 1.21115 0.81525 0.92578 0.75601 1.90836 1.54750 1.46199 1.45643 1.43723 1.08179 1.07177 1.73426 1.17958 0.93896 0.84489 0.93782 1.20870 0.98302 0.97408 1.02757 1.20633 0.97078 0.91803 0.92605 1.31103 1.08144 1.25338 1.12247 1.01826 0.73119 0.73435 0.73485 1.93543 1.79829 1.77913 1.44044 1.93500 1.29920 1.87323 1.85744 1.57105 1.33724 1.63949 1.26565 1.21358 0.95148 1.03382 0.85049 1.19132 0.79953 0.88897 0.98698 0.92426 1.22432 0.99895 0.98404 1.01123 1.21208 0.93771 1.23173 1.18496 0.89975 1.24889 0.96307 0.96312 0.95167 1.69880 1.04553 1.42755 1.35745 0.87052 0.77382 0.82328 0.82821 1.20276 1.22153 1.18472 1.20814 0.91307 0.95754 0.92595 1.21176 1.01301 0.93522 1.00323 0.91593 0.91848 0.91730 0.88627 0.88574 0.75296 0.85159 0.84191 0.93238 0.90294 0.91552 0.94514 0.92157 0.93161 0.92494 0.83888 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.20 37.16 0.34 -0.84 16 2 C -0.14 -0.99 6.42 -27.88 -0.18 -1.17 16 3 C 0.50 5.96 7.57 -10.99 -0.08 5.88 16 4 O -0.50 -8.61 13.67 5.55 0.08 -8.54 16 5 N -0.68 -7.06 5.34 -9.86 -0.05 -7.12 16 6 C 0.19 2.75 6.28 -83.69 -0.53 2.23 16 7 C -0.17 -2.27 9.96 -39.39 -0.39 -2.67 16 8 C 0.00 -0.02 9.51 -39.61 -0.38 -0.40 16 9 C -0.68 -12.14 5.98 -39.55 -0.24 -12.37 16 10 S 2.69 51.69 5.69 -107.50 -0.61 51.08 16 11 O -0.96 -20.70 15.84 -57.18 -0.91 -21.61 16 12 O -0.97 -18.65 15.88 -57.18 -0.91 -19.56 16 13 N -0.97 -19.73 3.06 -115.86 -0.35 -20.08 16 14 C 0.10 1.67 9.90 59.85 0.59 2.26 16 15 C 0.24 5.56 2.21 -69.08 -0.15 5.41 16 16 H 0.06 1.41 5.97 -51.93 -0.31 1.10 16 17 C -0.16 -3.43 8.65 37.16 0.32 -3.11 16 18 C -0.53 -14.25 8.95 -34.44 -0.31 -14.56 16 19 H 0.08 2.40 7.89 -52.49 -0.41 1.98 16 20 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 21 N -0.89 -26.89 13.96 55.43 0.77 -26.12 16 22 Si 0.87 21.57 24.37 -169.99 -4.14 17.43 16 23 H -0.28 -6.54 6.87 56.52 0.39 -6.15 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.26 -6.21 6.53 56.52 0.37 -5.84 16 26 C 0.02 0.28 9.51 -39.61 -0.38 -0.10 16 27 C -0.14 -2.40 8.66 -39.39 -0.34 -2.74 16 28 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.41 2.45 8.82 -40.82 -0.36 2.09 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.14 1.83 7.61 -52.49 -0.40 1.43 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.33 6.43 -51.93 -0.33 0.99 16 38 H 0.07 1.00 7.02 -51.93 -0.36 0.63 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 1.21 6.66 -51.93 -0.35 0.86 16 41 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 43 H 0.14 2.60 7.61 -52.49 -0.40 2.20 16 44 H 0.14 2.35 6.42 -52.49 -0.34 2.01 16 LS Contribution 367.54 15.07 5.54 5.54 Total: -1.00 -36.14 367.54 -8.39 -44.53 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -5.99 Total: 4.54 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -1.81 Total: -20.10 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.37 Total: -53.31 kcal Atomic # 8 Polarization: -47.97 SS G_CDS: -1.74 Total: -49.70 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.14 Total: 17.43 kcal Atomic # 16 Polarization: 51.69 SS G_CDS: -0.61 Total: 51.08 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.14 -8.39 -44.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103496360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.152 kcal (2) G-P(sol) polarization free energy of solvation -36.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds