Wall clock time and date at job start Sat Apr 11 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.46711 * 2 1 4 4 O 1.21283 * 119.99953 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99791 * 179.97438 * 3 2 1 6 6 C 1.39927 * 119.99853 * 185.28002 * 5 3 2 7 7 C 1.38871 * 120.06921 * 33.28716 * 6 5 3 8 8 C 1.38114 * 119.92504 * 180.02562 * 7 6 5 9 9 C 1.38288 * 120.07229 * 0.02562 * 8 7 6 10 10 S 1.76194 * 119.92909 * 179.97438 * 9 8 7 11 11 O 1.42104 * 106.40503 * 336.45813 * 10 9 8 12 12 O 1.42103 * 106.40361 * 203.53752 * 10 9 8 13 13 N 1.65598 * 107.21956 * 90.00011 * 10 9 8 14 14 C 1.46498 * 119.99985 * 270.00036 * 13 10 9 15 15 C 1.46499 * 120.00047 * 89.99959 * 13 10 9 16 16 H 1.09003 * 109.47054 * 0.02562 * 15 13 10 17 17 C 1.53004 * 109.47222 * 240.00243 * 15 13 10 18 18 C 1.50699 * 109.47277 * 120.00154 * 15 13 10 19 19 H 1.08001 * 120.00140 * 359.97438 * 18 15 13 20 20 C 1.37873 * 120.00116 * 180.02562 * 18 15 13 21 21 N 1.31519 * 120.00224 * 359.97438 * 20 18 15 22 22 Si 1.86797 * 120.00121 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47253 * 89.99712 * 22 20 18 24 24 H 1.48500 * 109.47258 * 209.99867 * 22 20 18 25 25 H 1.48502 * 109.47268 * 329.99584 * 22 20 18 26 26 C 1.38281 * 120.13850 * 0.25323 * 9 8 7 27 27 C 1.38116 * 120.07105 * 359.49175 * 26 9 8 28 28 H 1.09001 * 109.47028 * 59.99949 * 1 2 3 29 29 H 1.09005 * 109.46562 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47066 * 299.99544 * 1 2 3 31 31 H 1.08997 * 109.47066 * 240.00456 * 2 1 3 32 32 H 1.09000 * 109.47413 * 119.99679 * 2 1 3 33 33 H 0.96997 * 120.00015 * 5.28020 * 5 3 2 34 34 H 1.07999 * 120.03986 * 0.02562 * 7 6 5 35 35 H 1.08003 * 119.96740 * 179.97438 * 8 7 6 36 36 H 1.08999 * 109.46944 * 269.99821 * 14 13 10 37 37 H 1.09000 * 109.47229 * 29.99887 * 14 13 10 38 38 H 1.09003 * 109.47363 * 149.99885 * 14 13 10 39 39 H 1.08995 * 109.47117 * 59.99318 * 17 15 13 40 40 H 1.08998 * 109.47330 * 180.02562 * 17 15 13 41 41 H 1.09003 * 109.46968 * 299.99883 * 17 15 13 42 42 H 0.96998 * 120.00273 * 180.02562 * 21 20 18 43 43 H 1.08001 * 119.96431 * 179.74070 * 26 9 8 44 44 H 1.08004 * 120.03384 * 180.25116 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8246 2.9815 0.1120 7 6 3.1209 3.9081 0.8701 8 6 3.5845 5.2047 0.9777 9 6 4.7478 5.5806 0.3312 10 16 5.3354 7.2358 0.4705 11 8 4.2068 8.0365 0.7938 12 8 6.1529 7.4686 -0.6683 13 7 6.3397 7.2904 1.7860 14 6 5.7961 7.6027 3.1101 15 6 7.7718 7.0262 1.6258 16 1 7.9873 6.8151 0.5783 17 6 8.1670 5.8209 2.4813 18 6 8.5578 8.2342 2.0663 19 1 8.0421 9.1112 2.4289 20 6 9.9351 8.2203 2.0054 21 7 10.5630 7.1526 1.5633 22 14 10.9093 9.7179 2.5507 23 1 11.2199 9.6060 3.9985 24 1 12.1748 9.7937 1.7774 25 1 10.1078 10.9446 2.3097 26 6 5.4476 4.6616 -0.4291 27 6 4.9921 3.3622 -0.5364 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9871 0.9335 -0.0764 34 1 2.2122 3.6153 1.3749 35 1 3.0376 5.9261 1.5667 36 1 5.8270 8.6804 3.2705 37 1 4.7646 7.2558 3.1705 38 1 6.3924 7.1044 3.8745 39 1 7.5984 4.9472 2.1628 40 1 9.2325 5.6246 2.3624 41 1 7.9515 6.0324 3.5287 42 1 11.5320 7.1427 1.5208 43 1 6.3534 4.9593 -0.9362 44 1 5.5414 2.6439 -1.1271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103496362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:20 Heat of formation + Delta-G solvation = -80.216594 kcal Electronic energy + Delta-G solvation = -27740.394642 eV Core-core repulsion = 23785.040613 eV Total energy + Delta-G solvation = -3955.354029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.85421 -38.66813 -36.65278 -36.15727 -35.23368 -35.09934 -33.30638 -32.57407 -31.04926 -29.91995 -29.08289 -25.58279 -25.35625 -25.10914 -23.15156 -22.58632 -20.74739 -20.54818 -18.55234 -18.07590 -17.54374 -17.23036 -16.75566 -16.31382 -16.13263 -15.42869 -14.94824 -14.74987 -14.47656 -14.31350 -13.88450 -13.56554 -13.41105 -13.39142 -13.03972 -12.92589 -12.75558 -12.67689 -12.21442 -11.97144 -11.73884 -11.63742 -11.51944 -11.38859 -11.33833 -11.20782 -10.96146 -10.86242 -10.76074 -10.59193 -10.42774 -10.28373 -10.13750 -9.95524 -9.24072 -9.01579 -8.56011 -8.44851 -7.94202 -6.06805 -4.12923 0.71580 1.10276 1.34958 2.17943 2.61962 3.29508 3.36522 3.40599 3.44691 3.83440 4.17570 4.37384 4.43291 4.55654 4.60646 4.66450 4.87235 4.96281 5.05371 5.24822 5.29123 5.34735 5.37889 5.47572 5.52183 5.62233 5.79211 5.82644 5.96603 6.09847 6.17023 6.22519 6.27309 6.38339 6.63709 6.77655 6.81124 6.85753 6.96722 7.01869 7.44719 7.63977 7.69704 7.79193 8.04223 8.27868 8.89390 9.52723 10.98955 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022948 B = 0.002796 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.872038 B =10012.898636 C =10503.081386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.142 4.142 3 C 0.509 3.491 4 O -0.514 6.514 5 N -0.678 5.678 6 C 0.189 3.811 7 C -0.147 4.147 8 C -0.003 4.003 9 C -0.686 4.686 10 S 2.684 3.316 11 O -0.974 6.974 12 O -0.953 6.953 13 N -0.980 5.980 14 C 0.108 3.892 15 C 0.266 3.734 16 H 0.061 0.939 17 C -0.150 4.150 18 C -0.517 4.517 19 H 0.064 0.936 20 C 0.063 3.937 21 N -0.891 5.891 22 Si 0.899 3.101 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.006 3.994 27 C -0.168 4.168 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.413 0.587 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.011 0.989 40 H 0.094 0.906 41 H 0.034 0.966 42 H 0.263 0.737 43 H 0.147 0.853 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.833 -16.641 -0.905 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.182 4.182 3 C 0.297 3.703 4 O -0.388 6.388 5 N -0.323 5.323 6 C 0.095 3.905 7 C -0.168 4.168 8 C -0.023 4.023 9 C -0.771 4.771 10 S 2.774 3.226 11 O -0.965 6.965 12 O -0.943 6.943 13 N -0.820 5.820 14 C -0.038 4.038 15 C 0.164 3.836 16 H 0.079 0.921 17 C -0.209 4.209 18 C -0.557 4.557 19 H 0.082 0.918 20 C -0.139 4.139 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.014 4.014 27 C -0.189 4.189 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.250 0.750 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.030 0.970 40 H 0.112 0.888 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.164 0.836 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.503 -15.448 -1.482 21.241 hybrid contribution 0.965 -0.516 0.468 1.190 sum -13.537 -15.964 -1.014 20.955 Atomic orbital electron populations 1.21557 0.92552 1.01938 1.03639 1.21660 0.99064 0.92701 1.04796 1.21094 0.81458 0.92535 0.75198 1.90758 1.54934 1.46402 1.46686 1.43741 1.08188 1.07367 1.72992 1.17963 0.94043 0.84418 0.94103 1.21154 1.01652 0.93479 1.00482 1.20797 0.92206 0.95644 0.93603 1.31441 1.07108 1.27206 1.11336 1.02183 0.72815 0.73856 0.73772 1.93509 1.52414 1.65912 1.84630 1.93568 1.67915 1.83995 1.48854 1.57423 1.19775 1.84172 1.20677 1.21196 0.96599 1.00901 0.85149 1.18792 0.72778 0.94549 0.97504 0.92110 1.22138 1.03844 0.96007 0.98935 1.21331 0.91006 0.99901 1.43484 0.91827 1.24901 0.97600 0.96345 0.95049 1.69855 1.08763 1.27957 1.46430 0.86488 0.79402 0.83060 0.78420 1.20692 1.21155 1.19794 1.20805 0.97185 0.91363 0.92012 1.20966 0.97974 0.97369 1.02614 0.91799 0.91742 0.91767 0.88513 0.88363 0.75039 0.84357 0.84152 0.92958 0.93143 0.90849 0.97035 0.88797 0.94693 0.92722 0.83559 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.20 37.16 0.34 -0.50 16 2 C -0.14 -0.73 6.42 -27.88 -0.18 -0.91 16 3 C 0.51 4.82 7.57 -10.98 -0.08 4.73 16 4 O -0.51 -7.03 13.67 5.55 0.08 -6.95 16 5 N -0.68 -5.96 5.34 -9.86 -0.05 -6.01 16 6 C 0.19 2.38 6.28 -83.69 -0.53 1.85 16 7 C -0.15 -2.08 8.66 -39.39 -0.34 -2.42 16 8 C 0.00 -0.04 9.51 -39.61 -0.38 -0.42 16 9 C -0.69 -11.60 5.98 -39.55 -0.24 -11.84 16 10 S 2.68 53.77 5.64 -107.50 -0.61 53.16 16 11 O -0.97 -20.37 16.35 -57.17 -0.93 -21.31 16 12 O -0.95 -21.96 15.83 -57.17 -0.91 -22.87 16 13 N -0.98 -20.31 3.06 -115.85 -0.35 -20.67 16 14 C 0.11 1.91 9.53 59.85 0.57 2.48 16 15 C 0.27 6.41 2.62 -69.08 -0.18 6.22 16 16 H 0.06 1.59 6.91 -51.93 -0.36 1.23 16 17 C -0.15 -3.33 8.95 37.16 0.33 -3.00 16 18 C -0.52 -13.76 8.37 -34.44 -0.29 -14.05 16 19 H 0.06 1.69 7.65 -52.49 -0.40 1.28 16 20 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 21 N -0.89 -24.40 11.32 55.43 0.63 -23.77 16 22 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.01 0.09 9.51 -39.61 -0.38 -0.28 16 27 C -0.17 -2.13 9.96 -39.39 -0.39 -2.52 16 28 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.41 2.08 8.82 -40.82 -0.36 1.72 16 34 H 0.14 1.90 6.41 -52.49 -0.34 1.56 16 35 H 0.14 1.97 7.61 -52.48 -0.40 1.57 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.75 7.79 -51.93 -0.40 0.34 16 38 H 0.07 1.25 6.43 -51.93 -0.33 0.91 16 39 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 41 H 0.03 0.73 6.66 -51.93 -0.35 0.39 16 42 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 43 H 0.15 2.25 7.60 -52.49 -0.40 1.85 16 44 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 375.17 15.07 5.65 5.65 Total: -1.00 -34.42 375.17 -9.52 -43.93 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.17 Total: 1.93 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -1.83 Total: -19.05 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.22 Total: -50.45 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -1.76 Total: -51.13 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 53.77 SS G_CDS: -0.61 Total: 53.16 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.42 -9.52 -43.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103496362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.282 kcal (2) G-P(sol) polarization free energy of solvation -34.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds