Wall clock time and date at job start Sat Apr 11 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47123 * 2 1 4 4 C 1.50700 * 109.46756 * 239.99921 * 2 1 3 5 5 C 1.38233 * 119.99791 * 100.81798 * 4 2 1 6 6 C 1.38234 * 120.00003 * 179.97438 * 5 4 2 7 7 C 1.38237 * 119.99819 * 359.97438 * 6 5 4 8 8 C 1.38229 * 119.99994 * 359.97438 * 7 6 5 9 9 C 1.38233 * 119.99935 * 280.71725 * 4 2 1 10 10 N 1.46495 * 109.47110 * 119.99789 * 2 1 3 11 11 C 1.46501 * 120.00204 * 176.48293 * 10 2 1 12 12 C 1.50701 * 109.47044 * 82.64794 * 11 10 2 13 13 N 1.34770 * 120.00412 * 185.14160 * 12 11 10 14 14 O 1.21284 * 119.99483 * 5.14614 * 12 11 10 15 15 S 1.65610 * 120.00048 * 356.48721 * 10 2 1 16 16 O 1.42104 * 104.27307 * 197.60795 * 15 10 2 17 17 O 1.42095 * 104.27537 * 325.46458 * 15 10 2 18 18 C 1.81403 * 104.44821 * 81.53726 * 15 10 2 19 19 C 1.53001 * 109.46953 * 182.21452 * 18 15 10 20 20 C 1.50695 * 109.47079 * 179.97438 * 19 18 15 21 21 H 1.08000 * 120.00205 * 0.02562 * 20 19 18 22 22 C 1.37883 * 119.99773 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99605 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00012 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47548 * 89.99795 * 24 22 20 26 26 H 1.48498 * 109.47003 * 209.99821 * 24 22 20 27 27 H 1.48500 * 109.47067 * 329.99522 * 24 22 20 28 28 H 1.08999 * 109.47068 * 74.97403 * 1 2 3 29 29 H 1.08995 * 109.47073 * 194.97810 * 1 2 3 30 30 H 1.09004 * 109.46992 * 314.97457 * 1 2 3 31 31 H 1.07998 * 120.00418 * 0.24571 * 5 4 2 32 32 H 1.08004 * 120.00331 * 179.97438 * 6 5 4 33 33 H 1.07999 * 119.99704 * 179.97438 * 7 6 5 34 34 H 1.08004 * 119.99699 * 179.97438 * 8 7 6 35 35 H 1.08001 * 120.00375 * 0.09549 * 9 4 2 36 36 H 1.08993 * 109.47317 * 202.64999 * 11 10 2 37 37 H 1.09005 * 109.46662 * 322.65436 * 11 10 2 38 38 H 0.97003 * 119.99520 * 0.02562 * 13 12 11 39 39 H 0.96999 * 120.00661 * 180.02562 * 13 12 11 40 40 H 1.09003 * 109.46590 * 302.21248 * 18 15 10 41 41 H 1.08992 * 109.46959 * 62.21356 * 18 15 10 42 42 H 1.09001 * 109.47289 * 300.00320 * 19 18 15 43 43 H 1.09007 * 109.47056 * 59.99732 * 19 18 15 44 44 H 0.96997 * 119.99801 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.4745 0.0195 -2.3179 6 6 2.9357 -0.6321 -3.4464 7 6 2.9552 -2.0137 -3.4873 8 6 2.5140 -2.7436 -2.3994 9 6 2.0527 -2.0920 -1.2709 10 7 2.0184 -0.6905 1.1962 11 6 3.4564 -0.8922 1.3898 12 6 4.0641 0.3556 1.9769 13 7 5.3985 0.4402 2.1460 14 8 3.3522 1.2838 2.2973 15 16 0.9447 -1.2433 2.3295 16 8 1.7382 -1.4574 3.4887 17 8 -0.0986 -0.2786 2.3237 18 6 0.3547 -2.8232 1.6613 19 6 -0.6968 -3.4142 2.6026 20 6 -1.1874 -4.7263 2.0472 21 1 -0.7889 -5.1015 1.1162 22 6 -2.1445 -5.4485 2.7282 23 7 -2.5730 -6.5933 2.2433 24 14 -2.8332 -4.7999 4.3389 25 1 -4.0230 -3.9549 4.0640 26 1 -3.2258 -5.9409 5.2045 27 1 -1.7984 -3.9884 5.0287 28 1 -0.3633 0.2664 -0.9925 29 1 -0.3633 -0.9927 0.2656 30 1 -0.3633 0.7264 0.7270 31 1 2.4637 1.0989 -2.2842 32 1 3.2808 -0.0618 -4.2962 33 1 3.3151 -2.5228 -4.3691 34 1 2.5288 -3.8231 -2.4316 35 1 1.7073 -2.6624 -0.4213 36 1 3.6177 -1.7292 2.0691 37 1 3.9256 -1.1077 0.4298 38 1 5.9678 -0.3021 1.8895 39 1 5.7896 1.2432 2.5243 40 1 -0.0882 -2.6594 0.6788 41 1 1.1920 -3.5151 1.5716 42 1 -0.2540 -3.5779 3.5851 43 1 -1.5342 -2.7221 2.6923 44 1 -3.2465 -7.1012 2.7221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129347063.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:31 Heat of formation + Delta-G solvation = -69.161081 kcal Electronic energy + Delta-G solvation = -28863.899403 eV Core-core repulsion = 24909.024777 eV Total energy + Delta-G solvation = -3954.874626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.04417 -39.22314 -37.14545 -36.33221 -35.50357 -34.02329 -33.78498 -32.15791 -31.55130 -30.92223 -29.61583 -26.67983 -26.10715 -24.01722 -22.65723 -21.42182 -21.16569 -20.67224 -18.64701 -17.83833 -17.50422 -17.23917 -16.77343 -16.57263 -16.20506 -15.65422 -15.28560 -15.09549 -14.91875 -14.38703 -14.23035 -13.98484 -13.77575 -13.74682 -13.44419 -13.26336 -12.79930 -12.70186 -12.39496 -12.08010 -12.00085 -11.93802 -11.65408 -11.49148 -11.33183 -11.26521 -11.02916 -10.99507 -10.52642 -10.43634 -10.23161 -10.14919 -9.82422 -9.72364 -9.43202 -9.02392 -8.98613 -8.80425 -8.67546 -6.18191 -4.19490 0.55141 1.21891 1.29788 2.56152 2.78735 3.26045 3.33452 3.37930 3.42422 3.68343 4.18842 4.34763 4.37353 4.46977 4.65271 4.79270 4.86018 4.90625 5.04297 5.05744 5.11657 5.14796 5.21449 5.36219 5.42276 5.43849 5.48386 5.61294 5.86094 5.87405 5.91355 6.02181 6.23659 6.32024 6.38229 6.44609 6.56101 6.61045 6.66167 6.79309 6.89152 6.91035 7.17357 7.52507 8.15858 8.34490 8.82590 9.41661 10.94084 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011332 B = 0.004481 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.348523 B = 6246.722947 C = 7738.118561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.196 3.804 3 H 0.090 0.910 4 C -0.096 4.096 5 C -0.111 4.111 6 C -0.121 4.121 7 C -0.122 4.122 8 C -0.115 4.115 9 C -0.109 4.109 10 N -0.979 5.979 11 C 0.103 3.897 12 C 0.502 3.498 13 N -0.858 5.858 14 O -0.529 6.529 15 S 2.586 3.414 16 O -0.963 6.963 17 O -0.950 6.950 18 C -0.593 4.593 19 C -0.005 4.005 20 C -0.518 4.518 21 H 0.078 0.922 22 C 0.073 3.927 23 N -0.895 5.895 24 Si 0.867 3.133 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.262 1.262 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.401 0.599 39 H 0.400 0.600 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.031 0.969 43 H 0.029 0.971 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.952 11.747 -10.054 22.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.091 3.909 3 H 0.108 0.892 4 C -0.097 4.097 5 C -0.130 4.130 6 C -0.139 4.139 7 C -0.140 4.140 8 C -0.133 4.133 9 C -0.127 4.127 10 N -0.813 5.813 11 C -0.027 4.027 12 C 0.284 3.716 13 N -0.423 5.423 14 O -0.403 6.403 15 S 2.686 3.314 16 O -0.953 6.953 17 O -0.940 6.940 18 C -0.725 4.725 19 C -0.044 4.044 20 C -0.557 4.557 21 H 0.096 0.904 22 C -0.130 4.130 23 N -0.533 5.533 24 Si 0.693 3.307 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.186 1.186 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.126 0.874 38 H 0.229 0.771 39 H 0.231 0.769 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.050 0.950 43 H 0.047 0.953 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.980 12.581 -9.048 22.260 hybrid contribution 0.190 -0.429 0.214 0.515 sum 16.170 12.152 -8.835 22.073 Atomic orbital electron populations 1.22824 0.91765 1.05131 1.04623 1.19796 0.94982 0.95599 0.80565 0.89184 1.20274 0.99429 0.94215 0.95822 1.20986 0.99057 0.99767 0.93202 1.21099 1.00238 0.94630 0.97951 1.21167 1.00189 0.94190 0.98494 1.21221 0.98538 1.00229 0.93322 1.21208 0.98923 0.93913 0.98694 1.57547 1.14920 1.71890 1.36917 1.21045 0.82219 0.96235 1.03163 1.21297 0.82448 0.90005 0.77808 1.43845 1.07893 1.22318 1.68265 1.90756 1.60654 1.39603 1.49310 1.05947 0.74016 0.77709 0.73777 1.93520 1.68741 1.87295 1.45749 1.93588 1.57102 1.57426 1.85884 1.30607 1.10946 1.18689 1.12246 1.19400 0.92475 0.98560 0.93980 1.20819 1.23012 1.02335 1.09571 0.90354 1.24965 0.95852 0.94604 0.97548 1.69876 1.30271 1.13734 1.39394 0.86959 0.80378 0.79187 0.84159 1.19596 1.20727 1.18638 0.90766 0.92082 0.86922 0.86067 0.86249 0.86271 0.85765 0.85629 0.86323 0.87410 0.77124 0.76931 0.85227 0.85557 0.95050 0.95253 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.56 7.64 37.16 0.28 -2.28 16 2 C 0.20 2.48 3.27 -69.08 -0.23 2.26 16 3 H 0.09 1.13 7.99 -51.93 -0.42 0.71 16 4 C -0.10 -1.05 3.87 -104.63 -0.40 -1.46 16 5 C -0.11 -1.07 9.67 -39.58 -0.38 -1.45 16 6 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 7 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 8 C -0.12 -1.18 10.05 -39.59 -0.40 -1.57 16 9 C -0.11 -1.23 8.70 -39.58 -0.34 -1.58 16 10 N -0.98 -13.58 1.72 -109.81 -0.19 -13.77 16 11 C 0.10 1.15 5.48 -5.19 -0.03 1.12 16 12 C 0.50 6.24 8.14 -10.99 -0.09 6.15 16 13 N -0.86 -6.52 8.87 31.22 0.28 -6.24 16 14 O -0.53 -9.09 17.27 5.55 0.10 -9.00 16 15 S 2.59 46.35 4.76 -107.50 -0.51 45.84 16 16 O -0.96 -19.51 16.64 -57.54 -0.96 -20.47 16 17 O -0.95 -19.06 13.68 -57.54 -0.79 -19.85 16 18 C -0.59 -10.72 4.43 37.16 0.16 -10.55 16 19 C 0.00 -0.11 4.05 -27.88 -0.11 -0.23 16 20 C -0.52 -14.18 9.66 -34.44 -0.33 -14.51 16 21 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 22 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 23 N -0.89 -26.71 13.96 55.43 0.77 -25.93 16 24 Si 0.87 21.38 27.47 -169.99 -4.67 16.71 16 25 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 28 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 29 H 0.06 0.89 4.37 -51.93 -0.23 0.67 16 30 H 0.11 1.75 6.24 -51.93 -0.32 1.43 16 31 H 0.12 0.99 8.03 -52.49 -0.42 0.57 16 32 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 33 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.13 1.46 5.37 -52.49 -0.28 1.18 16 36 H 0.12 1.19 7.27 -51.93 -0.38 0.81 16 37 H 0.11 0.86 6.84 -51.93 -0.36 0.50 16 38 H 0.40 1.64 8.83 -40.82 -0.36 1.28 16 39 H 0.40 2.69 8.93 -40.82 -0.36 2.32 16 40 H 0.13 2.15 5.68 -51.92 -0.29 1.85 16 41 H 0.13 2.00 7.92 -51.93 -0.41 1.59 16 42 H 0.03 0.74 7.20 -51.93 -0.37 0.37 16 43 H 0.03 0.68 7.57 -51.93 -0.39 0.29 16 44 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 366.41 15.07 5.52 5.52 Total: -1.00 -37.20 366.41 -9.08 -46.29 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.87 Total: 5.99 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: -2.76 Total: -25.09 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.86 Total: -45.94 kcal Atomic # 8 Polarization: -47.67 SS G_CDS: -1.65 Total: -49.32 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Atomic # 16 Polarization: 46.35 SS G_CDS: -0.51 Total: 45.84 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.20 -9.08 -46.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129347063.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.875 kcal (2) G-P(sol) polarization free energy of solvation -37.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds