Wall clock time and date at job start Sat Apr 11 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47123 * 2 1 4 4 C 1.50700 * 109.46756 * 239.99921 * 2 1 3 5 5 C 1.38233 * 119.99791 * 100.81798 * 4 2 1 6 6 C 1.38234 * 120.00003 * 179.97438 * 5 4 2 7 7 C 1.38237 * 119.99819 * 359.97438 * 6 5 4 8 8 C 1.38229 * 119.99994 * 359.97438 * 7 6 5 9 9 C 1.38233 * 119.99935 * 280.71725 * 4 2 1 10 10 N 1.46495 * 109.47110 * 119.99789 * 2 1 3 11 11 C 1.46501 * 120.00204 * 176.48293 * 10 2 1 12 12 C 1.50701 * 109.47044 * 82.64794 * 11 10 2 13 13 N 1.34770 * 120.00412 * 185.14160 * 12 11 10 14 14 O 1.21284 * 119.99483 * 5.14614 * 12 11 10 15 15 S 1.65610 * 120.00048 * 356.48721 * 10 2 1 16 16 O 1.42104 * 104.27307 * 197.60795 * 15 10 2 17 17 O 1.42095 * 104.27537 * 325.46458 * 15 10 2 18 18 C 1.81403 * 104.44821 * 81.53726 * 15 10 2 19 19 C 1.53001 * 109.46953 * 182.21452 * 18 15 10 20 20 C 1.50695 * 109.47079 * 179.97438 * 19 18 15 21 21 H 1.08000 * 120.00205 * 0.02562 * 20 19 18 22 22 C 1.37883 * 119.99773 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99605 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00012 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47548 * 89.99795 * 24 22 20 26 26 H 1.48498 * 109.47003 * 209.99821 * 24 22 20 27 27 H 1.48500 * 109.47067 * 329.99522 * 24 22 20 28 28 H 1.08999 * 109.47068 * 74.97403 * 1 2 3 29 29 H 1.08995 * 109.47073 * 194.97810 * 1 2 3 30 30 H 1.09004 * 109.46992 * 314.97457 * 1 2 3 31 31 H 1.07998 * 120.00418 * 0.24571 * 5 4 2 32 32 H 1.08004 * 120.00331 * 179.97438 * 6 5 4 33 33 H 1.07999 * 119.99704 * 179.97438 * 7 6 5 34 34 H 1.08004 * 119.99699 * 179.97438 * 8 7 6 35 35 H 1.08001 * 120.00375 * 0.09549 * 9 4 2 36 36 H 1.08993 * 109.47317 * 202.64999 * 11 10 2 37 37 H 1.09005 * 109.46662 * 322.65436 * 11 10 2 38 38 H 0.97003 * 119.99520 * 0.02562 * 13 12 11 39 39 H 0.96999 * 120.00661 * 180.02562 * 13 12 11 40 40 H 1.09003 * 109.46590 * 302.21248 * 18 15 10 41 41 H 1.08992 * 109.46959 * 62.21356 * 18 15 10 42 42 H 1.09001 * 109.47289 * 300.00320 * 19 18 15 43 43 H 1.09007 * 109.47056 * 59.99732 * 19 18 15 44 44 H 0.96997 * 119.99801 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.4745 0.0195 -2.3179 6 6 2.9357 -0.6321 -3.4464 7 6 2.9552 -2.0137 -3.4873 8 6 2.5140 -2.7436 -2.3994 9 6 2.0527 -2.0920 -1.2709 10 7 2.0184 -0.6905 1.1962 11 6 3.4564 -0.8922 1.3898 12 6 4.0641 0.3556 1.9769 13 7 5.3985 0.4402 2.1460 14 8 3.3522 1.2838 2.2973 15 16 0.9447 -1.2433 2.3295 16 8 1.7382 -1.4574 3.4887 17 8 -0.0986 -0.2786 2.3237 18 6 0.3547 -2.8232 1.6613 19 6 -0.6968 -3.4142 2.6026 20 6 -1.1874 -4.7263 2.0472 21 1 -0.7889 -5.1015 1.1162 22 6 -2.1445 -5.4485 2.7282 23 7 -2.5730 -6.5933 2.2433 24 14 -2.8332 -4.7999 4.3389 25 1 -4.0230 -3.9549 4.0640 26 1 -3.2258 -5.9409 5.2045 27 1 -1.7984 -3.9884 5.0287 28 1 -0.3633 0.2664 -0.9925 29 1 -0.3633 -0.9927 0.2656 30 1 -0.3633 0.7264 0.7270 31 1 2.4637 1.0989 -2.2842 32 1 3.2808 -0.0618 -4.2962 33 1 3.3151 -2.5228 -4.3691 34 1 2.5288 -3.8231 -2.4316 35 1 1.7073 -2.6624 -0.4213 36 1 3.6177 -1.7292 2.0691 37 1 3.9256 -1.1077 0.4298 38 1 5.9678 -0.3021 1.8895 39 1 5.7896 1.2432 2.5243 40 1 -0.0882 -2.6594 0.6788 41 1 1.1920 -3.5151 1.5716 42 1 -0.2540 -3.5779 3.5851 43 1 -1.5342 -2.7221 2.6923 44 1 -3.2465 -7.1012 2.7221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129347063.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:31 Heat of formation + Delta-G solvation = -97.593008 kcal Electronic energy + Delta-G solvation = -28865.132304 eV Core-core repulsion = 24909.024777 eV Total energy + Delta-G solvation = -3956.107527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.94621 -40.10814 -38.51358 -37.44732 -36.95545 -35.94164 -34.65860 -33.57232 -33.02097 -31.68211 -30.49526 -28.00943 -27.64191 -25.04725 -23.43141 -23.05474 -22.09654 -21.72607 -19.97991 -19.30613 -18.67404 -18.30393 -18.07880 -17.46450 -17.28795 -16.94464 -16.43049 -16.32327 -16.15211 -15.85229 -15.37243 -15.14834 -14.92548 -14.84158 -14.76484 -14.26410 -14.16993 -13.79360 -13.76161 -13.45725 -13.28843 -13.16124 -13.05049 -12.97809 -12.89530 -12.43641 -12.24451 -12.16576 -11.99748 -11.83825 -11.72184 -11.60385 -11.30151 -11.21540 -10.83933 -10.63212 -10.08939 -9.75260 -9.59773 -8.36136 -6.41037 -0.85439 0.45444 0.56643 1.30915 1.33566 1.42668 1.56012 1.64150 2.29160 2.58900 2.83271 2.92578 2.97956 3.11790 3.34810 3.74154 3.83778 3.93770 4.04874 4.11585 4.14627 4.21650 4.28227 4.34946 4.36599 4.52716 4.59677 4.68515 4.73003 4.80951 4.98735 5.02783 5.08258 5.12189 5.23144 5.39348 5.43375 5.47270 5.65431 5.71296 5.79326 5.93251 6.16585 6.17613 6.48286 6.64585 7.23191 7.37058 8.79157 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011332 B = 0.004481 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.348523 B = 6246.722947 C = 7738.118561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.200 3.800 3 H 0.093 0.907 4 C -0.101 4.101 5 C -0.113 4.113 6 C -0.119 4.119 7 C -0.121 4.121 8 C -0.126 4.126 9 C -0.124 4.124 10 N -0.972 5.972 11 C 0.095 3.905 12 C 0.496 3.504 13 N -0.833 5.833 14 O -0.585 6.585 15 S 2.603 3.397 16 O -0.988 6.988 17 O -0.976 6.976 18 C -0.590 4.590 19 C -0.014 4.014 20 C -0.521 4.521 21 H 0.055 0.945 22 C 0.019 3.981 23 N -0.937 5.937 24 Si 0.917 3.083 25 H -0.262 1.262 26 H -0.273 1.273 27 H -0.253 1.253 28 H 0.094 0.906 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.135 0.865 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.130 0.870 37 H 0.144 0.856 38 H 0.420 0.580 39 H 0.408 0.592 40 H 0.142 0.858 41 H 0.147 0.853 42 H 0.030 0.970 43 H 0.028 0.972 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.918 12.627 -11.282 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.095 3.905 3 H 0.110 0.890 4 C -0.102 4.102 5 C -0.131 4.131 6 C -0.136 4.136 7 C -0.139 4.139 8 C -0.144 4.144 9 C -0.143 4.143 10 N -0.808 5.808 11 C -0.034 4.034 12 C 0.279 3.721 13 N -0.399 5.399 14 O -0.464 6.464 15 S 2.701 3.299 16 O -0.979 6.979 17 O -0.966 6.966 18 C -0.722 4.722 19 C -0.053 4.053 20 C -0.560 4.560 21 H 0.073 0.927 22 C -0.180 4.180 23 N -0.577 5.577 24 Si 0.740 3.260 25 H -0.187 1.187 26 H -0.198 1.198 27 H -0.176 1.176 28 H 0.113 0.887 29 H 0.067 0.933 30 H 0.110 0.890 31 H 0.153 0.847 32 H 0.163 0.837 33 H 0.158 0.842 34 H 0.147 0.853 35 H 0.134 0.866 36 H 0.148 0.852 37 H 0.162 0.838 38 H 0.252 0.748 39 H 0.239 0.761 40 H 0.160 0.840 41 H 0.165 0.835 42 H 0.048 0.952 43 H 0.047 0.953 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 18.003 13.435 -10.276 24.702 hybrid contribution -0.291 -0.697 0.447 0.878 sum 17.712 12.737 -9.829 23.928 Atomic orbital electron populations 1.22805 0.93024 1.03720 1.05165 1.19806 0.94064 0.95860 0.80756 0.88957 1.20060 1.00646 0.94029 0.95511 1.21186 0.98461 1.00555 0.92905 1.21408 0.99233 0.94724 0.98280 1.21463 0.99198 0.94527 0.98683 1.21376 0.98791 1.00756 0.93468 1.21208 0.99910 0.94091 0.99045 1.57164 1.15679 1.71374 1.36582 1.21413 0.80552 0.96119 1.05323 1.21530 0.83539 0.89620 0.77387 1.43637 1.06577 1.23234 1.66447 1.90739 1.62200 1.41436 1.52018 1.05192 0.73814 0.77111 0.73739 1.93477 1.69277 1.87552 1.47556 1.93571 1.58623 1.57971 1.86481 1.30547 1.10370 1.19596 1.11641 1.19347 0.93990 0.96958 0.94974 1.21107 1.22511 1.03754 1.08674 0.92704 1.25767 0.96477 0.94858 1.00906 1.69990 1.31405 1.15158 1.41125 0.86141 0.80169 0.79127 0.80535 1.18690 1.19765 1.17630 0.88690 0.93278 0.89037 0.84678 0.83744 0.84159 0.85251 0.86620 0.85186 0.83838 0.74806 0.76094 0.83976 0.83483 0.95173 0.95341 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.19 7.64 71.98 0.55 -4.64 16 2 C 0.20 4.87 3.27 44.25 0.14 5.01 16 3 H 0.09 2.22 7.99 -2.39 -0.02 2.20 16 4 C -0.10 -2.02 3.87 -19.87 -0.08 -2.10 16 5 C -0.11 -1.83 9.67 22.27 0.22 -1.62 16 6 C -0.12 -1.65 10.05 22.27 0.22 -1.43 16 7 C -0.12 -1.80 10.05 22.27 0.22 -1.57 16 8 C -0.13 -2.31 10.05 22.27 0.22 -2.08 16 9 C -0.12 -2.60 8.70 22.27 0.19 -2.41 16 10 N -0.97 -26.13 1.72 -501.31 -0.86 -26.99 16 11 C 0.09 1.92 5.48 85.63 0.47 2.39 16 12 C 0.50 11.59 8.14 87.66 0.71 12.31 16 13 N -0.83 -10.70 8.87 -173.54 -1.54 -12.24 16 14 O -0.58 -19.94 17.27 -3.04 -0.05 -19.99 16 15 S 2.60 93.05 4.76 -56.49 -0.27 92.79 16 16 O -0.99 -39.86 16.64 -127.65 -2.12 -41.98 16 17 O -0.98 -39.84 13.68 -127.65 -1.75 -41.59 16 18 C -0.59 -21.26 4.43 71.98 0.32 -20.95 16 19 C -0.01 -0.64 4.05 29.85 0.12 -0.52 16 20 C -0.52 -28.94 9.66 25.60 0.25 -28.70 16 21 H 0.05 3.21 7.99 -2.91 -0.02 3.19 16 22 C 0.02 1.08 5.47 84.66 0.46 1.54 16 23 N -0.94 -56.90 13.96 21.45 0.30 -56.60 16 24 Si 0.92 43.88 27.47 68.60 1.88 45.76 16 25 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 26 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 27 H -0.25 -11.59 6.54 99.48 0.65 -10.94 16 28 H 0.09 2.13 8.05 -2.39 -0.02 2.11 16 29 H 0.05 1.44 4.37 -2.39 -0.01 1.43 16 30 H 0.09 2.92 6.24 -2.39 -0.01 2.90 16 31 H 0.14 1.79 8.03 -2.91 -0.02 1.77 16 32 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 33 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.12 2.59 5.37 -2.91 -0.02 2.57 16 36 H 0.13 2.36 7.27 -2.39 -0.02 2.34 16 37 H 0.14 1.86 6.84 -2.38 -0.02 1.85 16 38 H 0.42 2.12 8.83 -92.71 -0.82 1.30 16 39 H 0.41 4.60 8.93 -92.71 -0.83 3.77 16 40 H 0.14 4.73 5.68 -2.39 -0.01 4.71 16 41 H 0.15 4.58 7.92 -2.39 -0.02 4.56 16 42 H 0.03 1.41 7.20 -2.39 -0.02 1.40 16 43 H 0.03 1.33 7.57 -2.38 -0.02 1.31 16 44 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -81.97 366.41 -1.03 -83.00 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.65 Total: 22.59 kcal Atomic # 6 Polarization: -48.78 SS G_CDS: 4.03 Total: -44.75 kcal Atomic # 7 Polarization: -93.72 SS G_CDS: -2.10 Total: -95.82 kcal Atomic # 8 Polarization: -99.64 SS G_CDS: -3.92 Total: -103.56 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.76 kcal Atomic # 16 Polarization: 93.05 SS G_CDS: -0.27 Total: 92.79 kcal Total: -81.97 -1.03 -83.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129347063.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.593 kcal (2) G-P(sol) polarization free energy of solvation -81.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds