Wall clock time and date at job start Sat Apr 11 2020 05:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42904 * 109.47018 * 138.33353 * 3 2 1 5 5 C 1.35979 * 116.99964 * 179.97438 * 4 3 2 6 6 C 1.38548 * 120.08222 * 359.97438 * 5 4 3 7 7 C 1.38246 * 120.01766 * 180.02562 * 6 5 4 8 8 C 1.38279 * 120.17193 * 359.97438 * 7 6 5 9 9 C 1.38198 * 120.16365 * 0.02562 * 8 7 6 10 10 C 1.38715 * 119.98563 * 0.02562 * 9 8 7 11 11 N 1.40158 * 120.08508 * 179.97438 * 10 9 8 12 12 C 1.34776 * 120.00308 * 24.77206 * 11 10 9 13 13 O 1.21591 * 119.99736 * 5.63829 * 12 11 10 14 14 N 1.34776 * 119.99873 * 185.63710 * 12 11 10 15 15 C 1.40180 * 120.00027 * 180.02562 * 14 12 11 16 16 C 1.40410 * 125.97247 * 359.71407 * 15 14 12 17 17 C 1.35244 * 107.86757 * 179.86358 * 16 15 14 18 18 N 1.34962 * 107.85537 * 0.39399 * 17 16 15 19 19 C 1.46508 * 125.97267 * 179.72661 * 18 17 16 20 20 C 1.50700 * 109.47093 * 125.00266 * 19 18 17 21 21 H 1.08003 * 119.99877 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99870 * 179.97438 * 20 19 18 23 23 N 1.31507 * 120.00020 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99831 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47005 * 60.00363 * 24 22 20 26 26 H 1.48500 * 109.47448 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47403 * 300.00271 * 24 22 20 28 28 N 1.31215 * 125.97555 * 180.02562 * 15 14 12 29 29 H 4.38447 * 5.44415 * 180.02562 * 4 1 2 30 30 H 1.08994 * 109.46983 * 18.32966 * 3 2 1 31 31 H 1.09008 * 109.46600 * 258.32735 * 3 2 1 32 32 H 1.08003 * 119.98979 * 359.97438 * 6 5 4 33 33 H 1.07998 * 119.91642 * 179.97438 * 7 6 5 34 34 H 1.07999 * 119.91288 * 179.74208 * 8 7 6 35 35 H 1.08008 * 120.00782 * 180.02562 * 9 8 7 36 36 H 0.97005 * 119.99208 * 204.77259 * 11 10 9 37 37 H 0.97001 * 119.99596 * 359.97438 * 14 12 11 38 38 H 1.07995 * 126.06066 * 0.02562 * 16 15 14 39 39 H 1.07992 * 126.07078 * 180.14856 * 17 16 15 40 40 H 1.09000 * 109.47034 * 244.99918 * 19 18 17 41 41 H 1.09003 * 109.47096 * 5.00093 * 19 18 17 42 42 H 0.97004 * 119.99832 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1219 1.0074 -0.8957 5 6 4.4699 1.1414 -1.0137 6 6 5.3158 0.3226 -0.2833 7 6 6.6861 0.4604 -0.4040 8 6 7.2165 1.4142 -1.2532 9 6 6.3795 2.2348 -1.9852 10 6 5.0036 2.1030 -1.8684 11 7 4.1527 2.9345 -2.6095 12 6 4.5859 3.4896 -3.7586 13 8 5.6760 3.1892 -4.2058 14 7 3.8109 4.3777 -4.4121 15 6 4.2612 4.9547 -5.6076 16 6 5.4938 4.7040 -6.2314 17 6 5.5476 5.4491 -7.3588 18 7 4.3993 6.1530 -7.4447 19 6 4.0439 7.0932 -8.5106 20 6 2.7218 6.6931 -9.1132 21 1 2.1984 5.8256 -8.7392 22 6 2.1799 7.4353 -10.1411 23 7 2.8171 8.4919 -10.5960 24 14 0.5415 6.9390 -10.8884 25 1 -0.5083 6.9605 -9.8383 26 1 0.1812 7.8920 -11.9688 27 1 0.6493 5.5696 -11.4527 28 7 3.6069 5.8280 -6.3364 29 1 -1.0501 -0.0001 0.0004 30 1 3.0097 -0.9747 -0.3232 31 1 3.0092 0.2088 1.0065 32 1 4.9046 -0.4230 0.3811 33 1 7.3440 -0.1784 0.1665 34 1 8.2876 1.5210 -1.3410 35 1 6.7966 2.9786 -2.6480 36 1 3.2520 3.1103 -2.2951 37 1 2.9411 4.6169 -4.0555 38 1 6.2615 4.0329 -5.8756 39 1 6.3659 5.4790 -8.0628 40 1 3.9652 8.0986 -8.0970 41 1 4.8144 7.0767 -9.2815 42 1 2.4356 9.0143 -11.3190 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187261451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:57 Heat of formation + Delta-G solvation = 118.475342 kcal Electronic energy + Delta-G solvation = -27295.671728 eV Core-core repulsion = 23245.782428 eV Total energy + Delta-G solvation = -4049.889301 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.21983 -40.46804 -39.54396 -37.72763 -35.10546 -34.73136 -33.82530 -33.34113 -31.08274 -30.35820 -29.64362 -29.24491 -27.78433 -26.62032 -23.89586 -22.86751 -22.53850 -21.56407 -20.35000 -19.91933 -18.97332 -18.71594 -17.99510 -17.38976 -16.58004 -16.49792 -16.36631 -16.06842 -15.52684 -15.24179 -14.94438 -14.65216 -14.39295 -14.22922 -14.07573 -13.81817 -13.40305 -13.02121 -12.79506 -12.34467 -12.25038 -12.05385 -11.86404 -11.78280 -11.75048 -11.09083 -11.06154 -10.86176 -10.75486 -10.61032 -10.38868 -10.25152 -10.06342 -9.65992 -9.51241 -8.81539 -8.62471 -8.17718 -7.99362 -7.42930 -6.23669 -4.28731 1.08543 1.17021 1.82441 2.24380 2.29544 2.60331 3.02964 3.17748 3.26149 3.29284 3.33647 3.53617 3.57956 3.82498 3.90128 4.19799 4.34478 4.50448 4.57816 4.75917 4.77386 4.98976 5.11410 5.20042 5.27198 5.38551 5.49716 5.61100 5.77613 5.83168 6.01201 6.20267 6.24672 6.37052 6.51219 6.53687 6.60565 6.84714 6.98823 7.03049 7.07643 7.09177 7.44071 7.68983 7.77785 7.92509 8.05584 8.43509 8.63907 8.80581 9.36802 10.84997 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013848 B = 0.002202 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.510316 B =12715.206366 C =14521.423433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.204 4.204 3 C 0.177 3.823 4 O -0.314 6.314 5 C 0.093 3.907 6 C -0.188 4.188 7 C -0.105 4.105 8 C -0.130 4.130 9 C -0.096 4.096 10 C 0.153 3.847 11 N -0.674 5.674 12 C 0.714 3.286 13 O -0.551 6.551 14 N -0.637 5.637 15 C 0.273 3.727 16 C -0.285 4.285 17 C 0.052 3.948 18 N -0.319 5.319 19 C 0.259 3.741 20 C -0.529 4.529 21 H 0.068 0.932 22 C 0.062 3.938 23 N -0.895 5.895 24 Si 0.908 3.092 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.275 1.275 28 N -0.305 5.305 29 H 0.225 0.775 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.159 0.841 36 H 0.412 0.588 37 H 0.409 0.591 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.765 -16.636 23.727 29.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.205 4.205 3 C 0.103 3.897 4 O -0.228 6.228 5 C 0.046 3.954 6 C -0.208 4.208 7 C -0.124 4.124 8 C -0.149 4.149 9 C -0.116 4.116 10 C 0.056 3.944 11 N -0.321 5.321 12 C 0.414 3.586 13 O -0.426 6.426 14 N -0.287 5.287 15 C 0.019 3.981 16 C -0.317 4.317 17 C -0.098 4.098 18 N -0.101 5.101 19 C 0.141 3.859 20 C -0.567 4.567 21 H 0.086 0.914 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.735 3.265 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.200 1.200 28 N -0.136 5.136 29 H 0.242 0.758 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.176 0.824 36 H 0.248 0.752 37 H 0.244 0.756 38 H 0.179 0.821 39 H 0.186 0.814 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.460 -15.805 22.811 27.966 hybrid contribution -1.301 -0.625 0.031 1.444 sum 2.159 -16.430 22.842 28.220 Atomic orbital electron populations 1.25075 0.95926 0.97848 0.98304 1.22255 0.93547 1.02440 1.02209 1.19222 0.84890 0.91722 0.93859 1.86036 1.19123 1.55290 1.62377 1.18532 0.81985 0.95767 0.99137 1.20988 0.94277 1.02057 1.03439 1.20913 0.94107 0.98610 0.98747 1.21032 1.00072 0.96519 0.97232 1.21450 0.90264 1.00638 0.99254 1.16843 0.89962 0.92403 0.95143 1.42349 1.17465 1.49649 1.22677 1.15531 0.84116 0.79182 0.79739 1.90828 1.20650 1.64157 1.66950 1.41316 1.21251 1.43436 1.22665 1.18742 0.94068 0.97249 0.87994 1.21507 1.00203 1.11165 0.98818 1.22561 0.92189 0.95836 0.99209 1.49077 1.10738 1.32745 1.17541 1.19744 0.98034 0.86658 0.81438 1.21220 1.04479 1.13318 1.17722 0.91365 1.24939 0.98205 0.94630 0.96288 1.69906 1.39059 1.16863 1.27530 0.86387 0.83087 0.78370 0.78650 1.19953 1.21043 1.20045 1.77337 1.18325 1.18968 0.98951 0.75845 0.89495 0.89519 0.85165 0.85715 0.85408 0.82390 0.75233 0.75606 0.82098 0.81446 0.93711 0.92490 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 19.25 29.55 0.57 -0.50 16 2 C -0.20 -1.67 13.73 -37.12 -0.51 -2.18 16 3 C 0.18 1.24 5.21 34.37 0.18 1.41 16 4 O -0.31 -3.07 9.51 -19.67 -0.19 -3.25 16 5 C 0.09 0.94 6.70 -39.08 -0.26 0.68 16 6 C -0.19 -1.51 9.04 -39.46 -0.36 -1.87 16 7 C -0.10 -0.83 10.04 -39.56 -0.40 -1.22 16 8 C -0.13 -1.21 10.04 -39.58 -0.40 -1.61 16 9 C -0.10 -1.13 8.72 -39.42 -0.34 -1.47 16 10 C 0.15 1.81 6.45 -83.49 -0.54 1.27 16 11 N -0.67 -8.07 5.30 -14.11 -0.07 -8.14 16 12 C 0.71 10.76 8.34 -86.92 -0.72 10.03 16 13 O -0.55 -9.57 10.64 5.29 0.06 -9.52 16 14 N -0.64 -10.03 5.45 -15.51 -0.08 -10.11 16 15 C 0.27 5.49 8.11 -154.37 -1.25 4.24 16 16 C -0.29 -5.63 9.61 -39.83 -0.38 -6.02 16 17 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 18 N -0.32 -7.42 3.67 -62.56 -0.23 -7.65 16 19 C 0.26 6.58 6.26 -5.19 -0.03 6.54 16 20 C -0.53 -14.75 9.24 -34.44 -0.32 -15.07 16 21 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.90 -25.36 13.29 55.43 0.74 -24.62 16 24 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 N -0.30 -7.02 12.42 31.44 0.39 -6.63 16 29 H 0.22 0.75 7.80 -54.08 -0.42 0.33 16 30 H 0.09 0.47 7.67 -51.93 -0.40 0.07 16 31 H 0.09 0.42 7.66 -51.92 -0.40 0.03 16 32 H 0.13 0.68 6.30 -52.48 -0.33 0.35 16 33 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 35 H 0.16 2.12 5.79 -52.48 -0.30 1.82 16 36 H 0.41 4.01 8.36 -40.82 -0.34 3.67 16 37 H 0.41 5.26 8.84 -40.82 -0.36 4.90 16 38 H 0.16 3.07 5.91 -52.49 -0.31 2.76 16 39 H 0.17 2.71 8.06 -52.49 -0.42 2.29 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 42 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -33.93 373.59 -8.36 -42.29 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -4.52 Total: 8.89 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -5.06 Total: -3.31 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: 0.74 Total: -57.15 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.13 Total: -12.77 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.93 -8.36 -42.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187261451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.765 kcal (2) G-P(sol) polarization free energy of solvation -33.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds