Wall clock time and date at job start Sat Apr 11 2020 05:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42904 * 109.47018 * 138.33353 * 3 2 1 5 5 C 1.35979 * 116.99964 * 179.97438 * 4 3 2 6 6 C 1.38548 * 120.08222 * 359.97438 * 5 4 3 7 7 C 1.38246 * 120.01766 * 180.02562 * 6 5 4 8 8 C 1.38279 * 120.17193 * 359.97438 * 7 6 5 9 9 C 1.38198 * 120.16365 * 0.02562 * 8 7 6 10 10 C 1.38715 * 119.98563 * 0.02562 * 9 8 7 11 11 N 1.40158 * 120.08508 * 179.97438 * 10 9 8 12 12 C 1.34776 * 120.00308 * 24.77206 * 11 10 9 13 13 O 1.21591 * 119.99736 * 5.63829 * 12 11 10 14 14 N 1.34776 * 119.99873 * 185.63710 * 12 11 10 15 15 C 1.40180 * 120.00027 * 180.02562 * 14 12 11 16 16 C 1.40410 * 125.97247 * 359.71407 * 15 14 12 17 17 C 1.35244 * 107.86757 * 179.86358 * 16 15 14 18 18 N 1.34962 * 107.85537 * 0.39399 * 17 16 15 19 19 C 1.46508 * 125.97267 * 179.72661 * 18 17 16 20 20 C 1.50700 * 109.47093 * 125.00266 * 19 18 17 21 21 H 1.08003 * 119.99877 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99870 * 179.97438 * 20 19 18 23 23 N 1.31507 * 120.00020 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99831 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47005 * 60.00363 * 24 22 20 26 26 H 1.48500 * 109.47448 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47403 * 300.00271 * 24 22 20 28 28 N 1.31215 * 125.97555 * 180.02562 * 15 14 12 29 29 H 4.38447 * 5.44415 * 180.02562 * 4 1 2 30 30 H 1.08994 * 109.46983 * 18.32966 * 3 2 1 31 31 H 1.09008 * 109.46600 * 258.32735 * 3 2 1 32 32 H 1.08003 * 119.98979 * 359.97438 * 6 5 4 33 33 H 1.07998 * 119.91642 * 179.97438 * 7 6 5 34 34 H 1.07999 * 119.91288 * 179.74208 * 8 7 6 35 35 H 1.08008 * 120.00782 * 180.02562 * 9 8 7 36 36 H 0.97005 * 119.99208 * 204.77259 * 11 10 9 37 37 H 0.97001 * 119.99596 * 359.97438 * 14 12 11 38 38 H 1.07995 * 126.06066 * 0.02562 * 16 15 14 39 39 H 1.07992 * 126.07078 * 180.14856 * 17 16 15 40 40 H 1.09000 * 109.47034 * 244.99918 * 19 18 17 41 41 H 1.09003 * 109.47096 * 5.00093 * 19 18 17 42 42 H 0.97004 * 119.99832 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1219 1.0074 -0.8957 5 6 4.4699 1.1414 -1.0137 6 6 5.3158 0.3226 -0.2833 7 6 6.6861 0.4604 -0.4040 8 6 7.2165 1.4142 -1.2532 9 6 6.3795 2.2348 -1.9852 10 6 5.0036 2.1030 -1.8684 11 7 4.1527 2.9345 -2.6095 12 6 4.5859 3.4896 -3.7586 13 8 5.6760 3.1892 -4.2058 14 7 3.8109 4.3777 -4.4121 15 6 4.2612 4.9547 -5.6076 16 6 5.4938 4.7040 -6.2314 17 6 5.5476 5.4491 -7.3588 18 7 4.3993 6.1530 -7.4447 19 6 4.0439 7.0932 -8.5106 20 6 2.7218 6.6931 -9.1132 21 1 2.1984 5.8256 -8.7392 22 6 2.1799 7.4353 -10.1411 23 7 2.8171 8.4919 -10.5960 24 14 0.5415 6.9390 -10.8884 25 1 -0.5083 6.9605 -9.8383 26 1 0.1812 7.8920 -11.9688 27 1 0.6493 5.5696 -11.4527 28 7 3.6069 5.8280 -6.3364 29 1 -1.0501 -0.0001 0.0004 30 1 3.0097 -0.9747 -0.3232 31 1 3.0092 0.2088 1.0065 32 1 4.9046 -0.4230 0.3811 33 1 7.3440 -0.1784 0.1665 34 1 8.2876 1.5210 -1.3410 35 1 6.7966 2.9786 -2.6480 36 1 3.2520 3.1103 -2.2951 37 1 2.9411 4.6169 -4.0555 38 1 6.2615 4.0329 -5.8756 39 1 6.3659 5.4790 -8.0628 40 1 3.9652 8.0986 -8.0970 41 1 4.8144 7.0767 -9.2815 42 1 2.4356 9.0143 -11.3190 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187261451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:57 Heat of formation + Delta-G solvation = 97.541378 kcal Electronic energy + Delta-G solvation = -27296.579493 eV Core-core repulsion = 23245.782428 eV Total energy + Delta-G solvation = -4050.797065 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.42299 -41.69261 -40.61422 -38.48554 -36.37862 -35.90870 -35.27697 -34.36512 -32.81242 -31.14896 -30.94353 -30.41043 -28.56695 -28.28441 -25.32998 -24.25519 -23.39004 -22.72037 -21.85806 -21.30642 -19.70425 -19.42266 -19.07883 -18.69241 -18.38039 -17.76612 -17.17878 -16.89239 -16.80085 -16.57055 -16.13741 -15.81134 -15.69885 -15.55836 -15.01348 -14.77212 -14.51981 -14.28372 -14.10284 -13.82574 -13.68080 -13.63134 -12.96219 -12.77015 -12.68717 -12.51414 -12.45989 -12.28817 -12.10751 -11.69065 -11.65752 -11.55154 -11.37778 -11.12586 -10.96084 -10.72115 -9.78411 -9.56099 -9.16625 -8.75306 -8.32746 -6.46864 0.30180 0.45005 0.98084 1.07726 1.26393 1.37961 1.39821 1.48628 1.65166 1.77003 2.04098 2.30746 2.35445 2.60270 2.88251 2.98301 2.99846 3.41779 3.91484 3.94683 3.99593 4.20862 4.26269 4.33453 4.34322 4.50510 4.54765 4.69824 4.80265 4.88660 4.93454 4.95998 5.00773 5.09076 5.22620 5.34791 5.49395 5.56464 5.65308 5.72674 5.83687 5.84884 5.93596 6.28509 6.36551 6.53564 6.58703 6.66794 7.07342 7.22862 7.24878 8.74514 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013848 B = 0.002202 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.510316 B =12715.206366 C =14521.423433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.243 4.243 3 C 0.170 3.830 4 O -0.330 6.330 5 C 0.092 3.908 6 C -0.184 4.184 7 C -0.095 4.095 8 C -0.136 4.136 9 C -0.115 4.115 10 C 0.119 3.881 11 N -0.659 5.659 12 C 0.714 3.286 13 O -0.575 6.575 14 N -0.632 5.632 15 C 0.283 3.717 16 C -0.290 4.290 17 C 0.058 3.942 18 N -0.344 5.344 19 C 0.273 3.727 20 C -0.548 4.548 21 H 0.052 0.948 22 C 0.019 3.981 23 N -0.920 5.920 24 Si 0.970 3.030 25 H -0.274 1.274 26 H -0.273 1.273 27 H -0.270 1.270 28 N -0.346 5.346 29 H 0.251 0.749 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.164 0.836 33 H 0.159 0.841 34 H 0.144 0.856 35 H 0.135 0.865 36 H 0.421 0.579 37 H 0.421 0.579 38 H 0.170 0.830 39 H 0.203 0.797 40 H 0.022 0.978 41 H 0.060 0.940 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.517 -18.901 25.350 31.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.243 4.243 3 C 0.097 3.903 4 O -0.245 6.245 5 C 0.045 3.955 6 C -0.202 4.202 7 C -0.113 4.113 8 C -0.155 4.155 9 C -0.136 4.136 10 C 0.024 3.976 11 N -0.307 5.307 12 C 0.414 3.586 13 O -0.452 6.452 14 N -0.283 5.283 15 C 0.028 3.972 16 C -0.322 4.322 17 C -0.090 4.090 18 N -0.126 5.126 19 C 0.154 3.846 20 C -0.587 4.587 21 H 0.070 0.930 22 C -0.182 4.182 23 N -0.558 5.558 24 Si 0.795 3.205 25 H -0.199 1.199 26 H -0.197 1.197 27 H -0.195 1.195 28 N -0.177 5.177 29 H 0.268 0.732 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.181 0.819 33 H 0.176 0.824 34 H 0.162 0.838 35 H 0.152 0.848 36 H 0.259 0.741 37 H 0.258 0.742 38 H 0.187 0.813 39 H 0.219 0.781 40 H 0.040 0.960 41 H 0.078 0.922 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.205 -18.099 24.495 30.624 hybrid contribution -1.181 -0.050 -0.285 1.216 sum 2.024 -18.149 24.210 30.325 Atomic orbital electron populations 1.25901 0.96897 0.96684 0.97195 1.22824 0.94567 1.03580 1.03325 1.19527 0.84511 0.91777 0.94525 1.86004 1.18931 1.56341 1.63268 1.18612 0.82570 0.95490 0.98819 1.21413 0.94196 1.01766 1.02869 1.21327 0.94612 0.97767 0.97622 1.21279 1.00725 0.96400 0.97101 1.21366 0.90825 1.01281 1.00111 1.17091 0.90090 0.93798 0.96594 1.42154 1.17946 1.49102 1.21514 1.15618 0.83677 0.78980 0.80276 1.90805 1.21658 1.64918 1.67790 1.41301 1.21984 1.43456 1.21561 1.19020 0.93847 0.95873 0.88505 1.21696 1.00329 1.11305 0.98827 1.23173 0.91837 0.94369 0.99660 1.48838 1.12040 1.33895 1.17809 1.19344 0.97281 0.86140 0.81827 1.21373 1.05697 1.13151 1.18436 0.93014 1.25728 1.01510 0.94471 0.96469 1.69983 1.40475 1.17495 1.27894 0.85420 0.78784 0.78370 0.77976 1.19894 1.19725 1.19523 1.77255 1.19693 1.20915 0.99843 0.73240 0.87894 0.87322 0.81857 0.82354 0.83835 0.84778 0.74113 0.74164 0.81295 0.78052 0.96022 0.92221 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 19.25 74.32 1.43 -0.40 16 2 C -0.24 -3.62 13.73 31.13 0.43 -3.19 16 3 C 0.17 2.01 5.21 70.18 0.37 2.37 16 4 O -0.33 -6.00 9.51 -93.31 -0.89 -6.89 16 5 C 0.09 1.73 6.70 22.59 0.15 1.88 16 6 C -0.18 -2.38 9.04 22.35 0.20 -2.18 16 7 C -0.09 -1.19 10.04 22.28 0.22 -0.97 16 8 C -0.14 -2.35 10.04 22.27 0.22 -2.12 16 9 C -0.12 -2.74 8.72 22.37 0.20 -2.55 16 10 C 0.12 2.80 6.45 38.17 0.25 3.05 16 11 N -0.66 -15.91 5.30 -316.80 -1.68 -17.59 16 12 C 0.71 21.87 8.34 179.05 1.49 23.36 16 13 O -0.58 -20.42 10.64 -4.00 -0.04 -20.47 16 14 N -0.63 -20.19 5.45 -321.23 -1.75 -21.94 16 15 C 0.28 11.56 8.11 133.32 1.08 12.64 16 16 C -0.29 -11.52 9.61 22.11 0.21 -11.31 16 17 C 0.06 2.31 11.44 83.52 0.96 3.27 16 18 N -0.34 -16.35 3.67 -351.83 -1.29 -17.64 16 19 C 0.27 14.28 6.26 85.63 0.54 14.82 16 20 C -0.55 -31.24 9.24 25.60 0.24 -31.00 16 21 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 22 C 0.02 1.04 5.46 84.66 0.46 1.50 16 23 N -0.92 -52.43 13.29 21.45 0.28 -52.14 16 24 Si 0.97 43.97 29.54 68.60 2.03 45.99 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 N -0.35 -16.37 12.42 -54.44 -0.68 -17.04 16 29 H 0.25 1.13 7.80 -4.41 -0.03 1.10 16 30 H 0.10 0.84 7.67 -2.39 -0.02 0.82 16 31 H 0.11 0.75 7.66 -2.38 -0.02 0.73 16 32 H 0.16 0.97 6.30 -2.91 -0.02 0.95 16 33 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 34 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 35 H 0.13 3.80 5.79 -2.91 -0.02 3.78 16 36 H 0.42 8.22 8.36 -92.70 -0.78 7.45 16 37 H 0.42 11.01 8.84 -92.71 -0.82 10.19 16 38 H 0.17 6.46 5.91 -2.91 -0.02 6.44 16 39 H 0.20 6.31 8.06 -2.91 -0.02 6.29 16 40 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.06 3.04 8.07 -2.39 -0.02 3.02 16 42 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -74.74 373.59 3.93 -70.81 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: -0.50 Total: 27.74 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 8.44 Total: 9.17 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -5.11 Total: -126.35 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.93 Total: -27.35 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -74.74 3.93 -70.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187261451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.350 kcal (2) G-P(sol) polarization free energy of solvation -74.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds