Wall clock time and date at job start Sat Apr 11 2020 05:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47049 * 2 1 4 4 C 1.52998 * 109.47370 * 239.99380 * 2 1 3 5 5 C 1.53003 * 109.47062 * 175.00262 * 4 2 1 6 6 S 1.81398 * 109.47269 * 180.02562 * 5 4 2 7 7 C 1.81395 * 103.00104 * 179.97438 * 6 5 4 8 8 O 1.42101 * 109.47157 * 63.60597 * 6 5 4 9 9 N 1.46499 * 109.47138 * 119.99045 * 2 1 3 10 10 C 1.34779 * 120.00544 * 275.00763 * 9 2 1 11 11 O 1.21581 * 119.99701 * 359.97438 * 10 9 2 12 12 N 1.34777 * 120.00001 * 179.97438 * 10 9 2 13 13 C 1.39943 * 119.99847 * 174.72652 * 12 10 9 14 14 C 1.38951 * 120.03550 * 146.09644 * 13 12 10 15 15 C 1.38167 * 120.06493 * 179.72038 * 14 13 12 16 16 C 1.38157 * 120.13882 * 0.55194 * 15 14 13 17 17 C 1.38916 * 120.07015 * 359.72505 * 16 15 14 18 18 O 1.35749 * 120.03302 * 179.97438 * 17 16 15 19 19 C 1.34835 * 117.00209 * 5.92091 * 18 17 16 20 20 H 1.08003 * 119.99969 * 5.40595 * 19 18 17 21 21 C 1.38648 * 119.99632 * 185.40357 * 19 18 17 22 22 N 1.31560 * 119.99560 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00666 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47334 * 89.99395 * 23 21 19 25 25 H 1.48495 * 109.47277 * 209.99895 * 23 21 19 26 26 H 1.48505 * 109.46879 * 329.99786 * 23 21 19 27 27 C 1.38705 * 120.03276 * 326.36888 * 13 12 10 28 28 H 1.09006 * 109.47123 * 60.00712 * 1 2 3 29 29 H 1.08997 * 109.47221 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47726 * 300.00695 * 1 2 3 31 31 H 1.08994 * 109.47095 * 295.00263 * 4 2 1 32 32 H 1.08994 * 109.46942 * 55.00268 * 4 2 1 33 33 H 1.09006 * 109.46802 * 299.99753 * 5 4 2 34 34 H 1.08994 * 109.47248 * 59.99629 * 5 4 2 35 35 H 1.08995 * 109.46964 * 59.99947 * 7 6 5 36 36 H 1.09006 * 109.46973 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.47067 * 299.99534 * 7 6 5 38 38 H 0.97003 * 119.99531 * 94.99826 * 9 2 1 39 39 H 0.97000 * 119.99751 * 354.44955 * 12 10 9 40 40 H 1.08003 * 119.96709 * 359.97342 * 14 13 12 41 41 H 1.08003 * 119.92730 * 180.27919 * 15 14 13 42 42 H 1.07996 * 119.97070 * 179.70319 * 16 15 14 43 43 H 0.97002 * 119.99927 * 180.02562 * 22 21 19 44 44 H 1.08005 * 120.07313 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5649 -0.6134 -1.3135 6 16 4.1696 -1.4680 -2.7949 7 6 5.9656 -1.2329 -2.6970 8 8 3.6696 -0.8168 -3.9547 9 7 2.0183 -0.6904 1.1963 10 6 2.1469 -0.0180 2.3573 11 8 1.8581 1.1618 2.4116 12 7 2.5957 -0.6534 3.4579 13 6 2.8343 0.0673 4.6335 14 6 2.6058 -0.5237 5.8701 15 6 2.8466 0.1854 7.0312 16 6 3.3043 1.4873 6.9667 17 6 3.5292 2.0857 5.7333 18 8 3.9784 3.3652 5.6708 19 6 4.3031 3.9578 6.8376 20 1 4.2842 3.3892 7.7557 21 6 4.6612 5.2971 6.8589 22 7 4.9784 5.8751 7.9973 23 14 4.6933 6.2808 5.2712 24 1 3.3614 6.8967 5.0434 25 1 5.7215 7.3475 5.3705 26 1 5.0224 5.3799 4.1374 27 6 3.2937 1.3743 4.5653 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.7516 -1.7716 -1.2054 32 1 1.6055 -0.2619 -2.1369 33 1 3.8532 0.4369 -1.3573 34 1 3.9994 -1.0728 -0.4257 35 1 6.3404 -1.6770 -1.7749 36 1 6.4420 -1.7131 -3.5518 37 1 6.1935 -0.1671 -2.7060 38 1 2.2489 -1.6316 1.1528 39 1 2.7495 -1.6109 3.4363 40 1 2.2434 -1.5397 5.9237 41 1 2.6725 -0.2777 7.9913 42 1 3.4871 2.0407 7.8759 43 1 5.2286 6.8122 8.0123 44 1 3.4683 1.8373 3.6053 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268858932.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:21 Heat of formation + Delta-G solvation = -64.829951 kcal Electronic energy + Delta-G solvation = -26615.565172 eV Core-core repulsion = 22660.878358 eV Total energy + Delta-G solvation = -3954.686814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.51083 -38.97527 -37.36363 -36.23406 -36.04326 -34.15546 -32.53341 -32.33428 -30.29191 -29.53351 -29.30786 -28.26128 -25.19556 -24.46361 -22.89263 -21.63045 -20.97971 -20.65633 -18.56683 -18.07666 -17.85333 -17.40233 -16.54327 -15.78454 -15.43870 -15.32231 -15.23245 -15.12123 -14.77427 -14.58591 -14.22106 -13.80790 -13.79337 -13.74883 -13.58221 -13.26432 -12.99605 -12.81966 -12.49030 -12.34979 -12.31630 -12.25416 -11.93153 -11.64583 -11.58044 -11.27719 -11.14773 -10.96285 -10.81452 -10.43052 -10.24169 -10.00982 -9.75193 -9.35339 -9.20222 -8.83197 -8.66806 -7.75339 -7.28007 -6.38458 -4.04683 1.10649 2.01276 2.19032 2.25850 2.61316 3.25345 3.27800 3.32509 3.37632 3.46969 4.09680 4.28894 4.33530 4.49756 4.53284 4.56385 4.70874 4.81963 4.96400 5.06606 5.12749 5.18604 5.22371 5.36828 5.50451 5.51456 5.57736 5.62673 5.73741 5.78618 6.04261 6.09475 6.14196 6.26748 6.39577 6.42918 6.72255 6.94183 7.12356 7.17697 7.35555 7.62782 7.83363 7.98006 8.06706 8.62072 8.97485 9.61336 10.69114 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.002544 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.382574 B =11001.737333 C =12186.601200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.165 3.835 3 H 0.090 0.910 4 C -0.105 4.105 5 C -0.449 4.449 6 S 1.240 4.760 7 C -0.490 4.490 8 O -0.854 6.854 9 N -0.740 5.740 10 C 0.699 3.301 11 O -0.562 6.562 12 N -0.682 5.682 13 C 0.195 3.805 14 C -0.229 4.229 15 C -0.059 4.059 16 C -0.234 4.234 17 C 0.174 3.826 18 O -0.215 6.215 19 C -0.388 4.388 20 H 0.107 0.893 21 C 0.064 3.936 22 N -0.880 5.880 23 Si 0.903 3.097 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.188 4.188 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.394 0.606 39 H 0.402 0.598 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.134 0.866 43 H 0.279 0.721 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.133 -23.077 -17.451 29.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.058 3.942 3 H 0.108 0.892 4 C -0.144 4.144 5 C -0.586 4.586 6 S 1.439 4.561 7 C -0.647 4.647 8 O -0.849 6.849 9 N -0.397 5.397 10 C 0.399 3.601 11 O -0.437 6.437 12 N -0.330 5.330 13 C 0.101 3.899 14 C -0.251 4.251 15 C -0.078 4.078 16 C -0.253 4.253 17 C 0.121 3.879 18 O -0.119 6.119 19 C -0.463 4.463 20 H 0.125 0.875 21 C -0.139 4.139 22 N -0.518 5.518 23 Si 0.729 3.271 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.184 1.184 27 C -0.209 4.209 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.228 0.772 39 H 0.236 0.764 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.151 0.849 43 H 0.089 0.911 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.782 -22.052 -18.280 28.892 hybrid contribution 0.886 1.818 -0.310 2.047 sum -2.896 -20.234 -18.589 27.629 Atomic orbital electron populations 1.22219 0.95147 1.02147 1.02968 1.20795 0.93782 0.97433 0.82171 0.89223 1.21492 0.92365 1.02020 0.98540 1.27703 1.03152 1.11105 1.16611 1.70334 0.85566 1.15823 0.84423 1.27629 1.21151 1.07446 1.08503 1.93143 1.73760 1.77406 1.40634 1.45191 1.72279 1.13485 1.08752 1.15984 0.78434 0.85374 0.80304 1.91019 1.54816 1.14029 1.83805 1.42501 1.69470 1.11066 1.09933 1.16897 0.97587 0.91557 0.83876 1.20302 1.12844 1.00950 0.90970 1.20547 0.96702 0.93670 0.96881 1.21291 1.09244 0.96492 0.98316 1.18863 0.91268 0.85045 0.92694 1.83603 1.72166 1.21794 1.34361 1.20777 1.45705 0.94928 0.84904 0.87542 1.24445 0.95678 0.95605 0.98170 1.69649 1.44119 1.13025 1.25019 0.86207 0.78301 0.79425 0.83182 1.19829 1.20807 1.18351 1.20027 1.09121 0.94166 0.97609 0.91664 0.92387 0.91560 0.90075 0.89724 0.89254 0.86328 0.86824 0.87644 0.90027 0.77243 0.76375 0.87218 0.86754 0.84862 0.91093 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 9.48 37.16 0.35 -1.11 16 2 C 0.16 1.48 2.57 -67.93 -0.17 1.30 16 3 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 4 C -0.11 -0.63 4.76 -26.73 -0.13 -0.75 16 5 C -0.45 -2.58 5.81 37.16 0.22 -2.36 16 6 S 1.24 6.03 13.80 -107.50 -1.48 4.55 16 7 C -0.49 -2.38 10.74 101.05 1.09 -1.30 16 8 O -0.85 -10.49 18.14 -35.23 -0.64 -11.13 16 9 N -0.74 -6.46 4.53 -58.68 -0.27 -6.72 16 10 C 0.70 9.80 8.26 -86.92 -0.72 9.08 16 11 O -0.56 -11.00 13.71 5.29 0.07 -10.92 16 12 N -0.68 -8.77 5.35 -14.24 -0.08 -8.84 16 13 C 0.19 3.40 6.27 -83.72 -0.53 2.87 16 14 C -0.23 -3.69 9.96 -39.34 -0.39 -4.08 16 15 C -0.06 -1.05 10.03 -39.64 -0.40 -1.44 16 16 C -0.23 -5.09 9.13 -39.36 -0.36 -5.45 16 17 C 0.17 4.21 6.64 -39.13 -0.26 3.95 16 18 O -0.21 -5.93 8.58 0.04 0.00 -5.93 16 19 C -0.39 -11.19 9.90 30.88 0.31 -10.88 16 20 H 0.11 3.10 5.53 -52.48 -0.29 2.81 16 21 C 0.06 1.85 5.49 -17.52 -0.10 1.75 16 22 N -0.88 -25.84 13.96 55.48 0.77 -25.07 16 23 Si 0.90 22.64 28.62 -169.99 -4.86 17.78 16 24 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.26 -6.62 7.11 56.52 0.40 -6.22 16 27 C -0.19 -4.08 8.59 -39.21 -0.34 -4.41 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.12 0.45 7.75 -51.93 -0.40 0.05 16 35 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.10 0.46 8.14 -51.92 -0.42 0.04 16 37 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 38 H 0.39 1.82 8.62 -40.82 -0.35 1.46 16 39 H 0.40 3.30 8.84 -40.82 -0.36 2.94 16 40 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 41 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 42 H 0.13 3.03 5.71 -52.49 -0.30 2.73 16 43 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.13 2.97 6.43 -52.48 -0.34 2.64 16 LS Contribution 383.83 15.07 5.78 5.78 Total: -1.00 -40.39 383.83 -8.35 -48.74 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.22 Total: 4.60 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -1.43 Total: -12.83 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.43 Total: -40.64 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.57 Total: -27.99 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.86 Total: 17.78 kcal Atomic # 16 Polarization: 6.03 SS G_CDS: -1.48 Total: 4.55 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -40.39 -8.35 -48.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268858932.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.095 kcal (2) G-P(sol) polarization free energy of solvation -40.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds