Wall clock time and date at job start Sat Apr 11 2020 05:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47049 * 2 1 4 4 C 1.52998 * 109.47370 * 239.99380 * 2 1 3 5 5 C 1.53003 * 109.47062 * 175.00262 * 4 2 1 6 6 S 1.81398 * 109.47269 * 180.02562 * 5 4 2 7 7 C 1.81395 * 103.00104 * 179.97438 * 6 5 4 8 8 O 1.42101 * 109.47157 * 63.60597 * 6 5 4 9 9 N 1.46499 * 109.47138 * 119.99045 * 2 1 3 10 10 C 1.34779 * 120.00544 * 275.00763 * 9 2 1 11 11 O 1.21581 * 119.99701 * 359.97438 * 10 9 2 12 12 N 1.34777 * 120.00001 * 179.97438 * 10 9 2 13 13 C 1.39943 * 119.99847 * 174.72652 * 12 10 9 14 14 C 1.38951 * 120.03550 * 146.09644 * 13 12 10 15 15 C 1.38167 * 120.06493 * 179.72038 * 14 13 12 16 16 C 1.38157 * 120.13882 * 0.55194 * 15 14 13 17 17 C 1.38916 * 120.07015 * 359.72505 * 16 15 14 18 18 O 1.35749 * 120.03302 * 179.97438 * 17 16 15 19 19 C 1.34835 * 117.00209 * 5.92091 * 18 17 16 20 20 H 1.08003 * 119.99969 * 5.40595 * 19 18 17 21 21 C 1.38648 * 119.99632 * 185.40357 * 19 18 17 22 22 N 1.31560 * 119.99560 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00666 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47334 * 89.99395 * 23 21 19 25 25 H 1.48495 * 109.47277 * 209.99895 * 23 21 19 26 26 H 1.48505 * 109.46879 * 329.99786 * 23 21 19 27 27 C 1.38705 * 120.03276 * 326.36888 * 13 12 10 28 28 H 1.09006 * 109.47123 * 60.00712 * 1 2 3 29 29 H 1.08997 * 109.47221 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47726 * 300.00695 * 1 2 3 31 31 H 1.08994 * 109.47095 * 295.00263 * 4 2 1 32 32 H 1.08994 * 109.46942 * 55.00268 * 4 2 1 33 33 H 1.09006 * 109.46802 * 299.99753 * 5 4 2 34 34 H 1.08994 * 109.47248 * 59.99629 * 5 4 2 35 35 H 1.08995 * 109.46964 * 59.99947 * 7 6 5 36 36 H 1.09006 * 109.46973 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.47067 * 299.99534 * 7 6 5 38 38 H 0.97003 * 119.99531 * 94.99826 * 9 2 1 39 39 H 0.97000 * 119.99751 * 354.44955 * 12 10 9 40 40 H 1.08003 * 119.96709 * 359.97342 * 14 13 12 41 41 H 1.08003 * 119.92730 * 180.27919 * 15 14 13 42 42 H 1.07996 * 119.97070 * 179.70319 * 16 15 14 43 43 H 0.97002 * 119.99927 * 180.02562 * 22 21 19 44 44 H 1.08005 * 120.07313 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5649 -0.6134 -1.3135 6 16 4.1696 -1.4680 -2.7949 7 6 5.9656 -1.2329 -2.6970 8 8 3.6696 -0.8168 -3.9547 9 7 2.0183 -0.6904 1.1963 10 6 2.1469 -0.0180 2.3573 11 8 1.8581 1.1618 2.4116 12 7 2.5957 -0.6534 3.4579 13 6 2.8343 0.0673 4.6335 14 6 2.6058 -0.5237 5.8701 15 6 2.8466 0.1854 7.0312 16 6 3.3043 1.4873 6.9667 17 6 3.5292 2.0857 5.7333 18 8 3.9784 3.3652 5.6708 19 6 4.3031 3.9578 6.8376 20 1 4.2842 3.3892 7.7557 21 6 4.6612 5.2971 6.8589 22 7 4.9784 5.8751 7.9973 23 14 4.6933 6.2808 5.2712 24 1 3.3614 6.8967 5.0434 25 1 5.7215 7.3475 5.3705 26 1 5.0224 5.3799 4.1374 27 6 3.2937 1.3743 4.5653 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.7516 -1.7716 -1.2054 32 1 1.6055 -0.2619 -2.1369 33 1 3.8532 0.4369 -1.3573 34 1 3.9994 -1.0728 -0.4257 35 1 6.3404 -1.6770 -1.7749 36 1 6.4420 -1.7131 -3.5518 37 1 6.1935 -0.1671 -2.7060 38 1 2.2489 -1.6316 1.1528 39 1 2.7495 -1.6109 3.4363 40 1 2.2434 -1.5397 5.9237 41 1 2.6725 -0.2777 7.9913 42 1 3.4871 2.0407 7.8759 43 1 5.2286 6.8122 8.0123 44 1 3.4683 1.8373 3.6053 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268858932.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:20 Heat of formation + Delta-G solvation = -97.430293 kcal Electronic energy + Delta-G solvation = -26616.978829 eV Core-core repulsion = 22660.878358 eV Total energy + Delta-G solvation = -3956.100471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.73495 -40.60536 -38.70060 -37.42125 -36.80804 -35.53018 -34.45399 -33.36156 -31.30315 -30.93845 -29.77403 -29.61372 -27.23315 -25.18934 -24.15567 -23.06496 -22.18192 -21.71946 -19.89912 -19.75801 -19.10299 -18.35818 -17.57026 -16.97563 -16.74599 -16.45560 -16.29729 -16.08533 -15.89389 -15.71232 -15.53783 -15.49391 -15.22205 -14.57944 -14.43610 -14.31787 -14.21547 -14.16177 -13.83871 -13.55499 -13.31035 -13.11978 -12.93770 -12.85387 -12.74915 -12.59170 -12.49487 -12.17195 -12.07201 -11.93236 -11.57200 -11.34669 -11.08907 -11.04611 -10.86811 -10.15096 -9.34552 -9.21875 -8.85571 -8.53087 -6.24029 0.46281 0.66333 0.67642 1.24043 1.28630 1.45293 1.57006 1.75949 2.10468 2.23932 2.75753 2.87992 2.99350 3.13378 3.37626 3.75308 3.89956 4.03207 4.13421 4.25234 4.37303 4.38571 4.42636 4.47374 4.48858 4.66757 4.71490 4.73486 4.77138 4.88523 4.91033 5.05827 5.13547 5.16380 5.31228 5.37223 5.38766 5.47711 5.54384 5.70437 5.79615 5.91739 6.06539 6.25813 6.82555 7.10488 7.56548 7.60575 8.58668 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.002544 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.382574 B =11001.737333 C =12186.601200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.164 3.836 3 H 0.047 0.953 4 C -0.101 4.101 5 C -0.453 4.453 6 S 1.314 4.686 7 C -0.495 4.495 8 O -0.930 6.930 9 N -0.710 5.710 10 C 0.694 3.306 11 O -0.622 6.622 12 N -0.663 5.663 13 C 0.206 3.794 14 C -0.194 4.194 15 C -0.051 4.051 16 C -0.251 4.251 17 C 0.133 3.867 18 O -0.252 6.252 19 C -0.395 4.395 20 H 0.089 0.911 21 C 0.015 3.985 22 N -0.919 5.919 23 Si 0.961 3.039 24 H -0.271 1.271 25 H -0.260 1.260 26 H -0.274 1.274 27 C -0.204 4.204 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.031 0.969 31 H 0.129 0.871 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.113 0.887 37 H 0.057 0.943 38 H 0.421 0.579 39 H 0.431 0.569 40 H 0.169 0.831 41 H 0.156 0.844 42 H 0.112 0.888 43 H 0.285 0.715 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.846 -28.156 -18.400 33.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.057 3.943 3 H 0.065 0.935 4 C -0.140 4.140 5 C -0.590 4.590 6 S 1.514 4.486 7 C -0.653 4.653 8 O -0.925 6.925 9 N -0.368 5.368 10 C 0.394 3.606 11 O -0.501 6.501 12 N -0.313 5.313 13 C 0.110 3.890 14 C -0.215 4.215 15 C -0.069 4.069 16 C -0.271 4.271 17 C 0.084 3.916 18 O -0.160 6.160 19 C -0.471 4.471 20 H 0.106 0.894 21 C -0.183 4.183 22 N -0.560 5.560 23 Si 0.784 3.216 24 H -0.196 1.196 25 H -0.184 1.184 26 H -0.199 1.199 27 C -0.226 4.226 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.050 0.950 31 H 0.147 0.853 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.131 0.869 37 H 0.076 0.924 38 H 0.260 0.740 39 H 0.271 0.729 40 H 0.186 0.814 41 H 0.174 0.826 42 H 0.130 0.870 43 H 0.095 0.905 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.506 -27.260 -19.277 33.690 hybrid contribution 1.026 3.014 -0.060 3.184 sum -3.480 -24.246 -19.336 31.207 Atomic orbital electron populations 1.22181 0.94705 1.03615 1.01593 1.20790 0.94135 0.95993 0.83369 0.93460 1.21504 0.92154 1.04280 0.96027 1.27789 1.03500 1.09495 1.18257 1.69438 0.84407 1.13208 0.81533 1.27694 1.20726 1.06264 1.10633 1.93005 1.76013 1.78843 1.44683 1.44891 1.70603 1.14509 1.06802 1.16251 0.78085 0.84756 0.81482 1.91009 1.57244 1.17080 1.84783 1.42226 1.68683 1.12133 1.08240 1.17010 0.95466 0.90145 0.86333 1.20906 1.08666 1.02796 0.89103 1.21022 0.94553 0.91690 0.99676 1.21337 1.10697 0.98565 0.96540 1.19386 0.93155 0.84403 0.94662 1.83547 1.74991 1.23923 1.33520 1.20757 1.46008 0.95287 0.85047 0.89373 1.25127 0.95822 0.96455 1.00942 1.69708 1.46178 1.13695 1.26429 0.85372 0.78813 0.78234 0.79187 1.19592 1.18406 1.19896 1.20072 1.10591 0.96219 0.95743 0.91109 0.89368 0.94967 0.85300 0.90847 0.92445 0.83619 0.83730 0.86861 0.92350 0.74028 0.72938 0.81399 0.82616 0.87016 0.90550 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.48 71.98 0.68 -1.94 16 2 C 0.16 2.72 2.57 44.99 0.12 2.83 16 3 H 0.05 1.22 7.58 -2.38 -0.02 1.20 16 4 C -0.10 -0.94 4.76 30.59 0.15 -0.79 16 5 C -0.45 -4.28 5.81 71.98 0.42 -3.86 16 6 S 1.31 10.12 13.80 -56.49 -0.78 9.34 16 7 C -0.49 -3.77 10.74 113.37 1.22 -2.55 16 8 O -0.93 -22.50 18.14 -148.98 -2.70 -25.20 16 9 N -0.71 -10.21 4.53 -457.82 -2.08 -12.28 16 10 C 0.69 18.16 8.26 179.05 1.48 19.64 16 11 O -0.62 -24.87 13.71 -3.97 -0.05 -24.92 16 12 N -0.66 -14.46 5.35 -317.24 -1.70 -16.16 16 13 C 0.21 6.62 6.27 38.13 0.24 6.86 16 14 C -0.19 -5.21 9.96 22.42 0.22 -4.99 16 15 C -0.05 -1.63 10.03 22.23 0.22 -1.41 16 16 C -0.25 -11.14 9.13 22.41 0.20 -10.94 16 17 C 0.13 6.74 6.64 22.56 0.15 6.89 16 18 O -0.25 -14.88 8.58 -22.79 -0.20 -15.08 16 19 C -0.39 -24.28 9.90 67.92 0.67 -23.61 16 20 H 0.09 5.54 5.53 -2.91 -0.02 5.52 16 21 C 0.02 0.92 5.49 84.83 0.47 1.38 16 22 N -0.92 -56.32 13.96 21.61 0.30 -56.02 16 23 Si 0.96 48.91 28.62 68.60 1.96 50.87 16 24 H -0.27 -13.49 7.11 99.48 0.71 -12.79 16 25 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 26 H -0.27 -14.41 7.11 99.48 0.71 -13.70 16 27 C -0.20 -9.05 8.59 22.51 0.19 -8.86 16 28 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.15 0.54 7.75 -2.39 -0.02 0.52 16 35 H 0.14 0.20 8.14 -2.39 -0.02 0.19 16 36 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.42 1.57 8.62 -92.71 -0.80 0.77 16 39 H 0.43 4.41 8.84 -92.71 -0.82 3.59 16 40 H 0.17 2.75 8.06 -2.91 -0.02 2.72 16 41 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 42 H 0.11 5.38 5.71 -2.91 -0.02 5.37 16 43 H 0.28 16.01 8.31 -92.71 -0.77 15.24 16 44 H 0.10 5.11 6.43 -2.91 -0.02 5.09 16 Total: -1.00 -99.38 383.83 0.61 -98.77 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -0.58 Total: 12.01 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 6.43 Total: -21.33 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -3.47 Total: -84.46 kcal Atomic # 8 Polarization: -62.25 SS G_CDS: -2.95 Total: -65.20 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 1.96 Total: 50.87 kcal Atomic # 16 Polarization: 10.12 SS G_CDS: -0.78 Total: 9.34 kcal Total: -99.38 0.61 -98.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268858932.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.335 kcal (2) G-P(sol) polarization free energy of solvation -99.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds