Wall clock time and date at job start Sat Apr 11 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46820 * 2 1 4 4 C 1.52998 * 109.46785 * 120.00029 * 2 1 3 5 5 C 1.53002 * 109.47130 * 185.00304 * 4 2 1 6 6 S 1.81399 * 109.47596 * 180.02562 * 5 4 2 7 7 C 1.81394 * 103.00064 * 180.02562 * 6 5 4 8 8 O 1.42097 * 109.47039 * 63.60781 * 6 5 4 9 9 N 1.46504 * 109.47166 * 239.99934 * 2 1 3 10 10 C 1.34770 * 120.00015 * 85.00198 * 9 2 1 11 11 O 1.21594 * 120.00123 * 359.97438 * 10 9 2 12 12 N 1.34776 * 120.00206 * 179.97438 * 10 9 2 13 13 C 1.39949 * 120.00172 * 174.52167 * 12 10 9 14 14 C 1.38958 * 120.03330 * 325.04306 * 13 12 10 15 15 C 1.38161 * 120.06396 * 180.27124 * 14 13 12 16 16 C 1.38163 * 120.14006 * 0.02562 * 15 14 13 17 17 C 1.38912 * 120.07016 * 359.97438 * 16 15 14 18 18 O 1.35746 * 120.03729 * 179.97438 * 17 16 15 19 19 C 1.34829 * 117.00520 * 185.66696 * 18 17 16 20 20 H 1.08007 * 119.99646 * 5.38270 * 19 18 17 21 21 C 1.38649 * 120.00180 * 185.37972 * 19 18 17 22 22 N 1.31556 * 120.00034 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99916 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47444 * 59.99814 * 23 21 19 25 25 H 1.48504 * 109.47174 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46926 * 300.00202 * 23 21 19 27 27 C 1.38705 * 120.03218 * 145.31673 * 13 12 10 28 28 H 1.08996 * 109.47561 * 300.00098 * 1 2 3 29 29 H 1.09004 * 109.47205 * 60.00507 * 1 2 3 30 30 H 1.09006 * 109.47010 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47520 * 304.99788 * 4 2 1 32 32 H 1.08996 * 109.47509 * 65.00386 * 4 2 1 33 33 H 1.09001 * 109.47013 * 300.00179 * 5 4 2 34 34 H 1.09009 * 109.47093 * 59.99495 * 5 4 2 35 35 H 1.08992 * 109.47324 * 59.99806 * 7 6 5 36 36 H 1.09004 * 109.46847 * 180.02562 * 7 6 5 37 37 H 1.09004 * 109.47336 * 299.99675 * 7 6 5 38 38 H 0.96997 * 119.99642 * 264.99849 * 9 2 1 39 39 H 0.96999 * 120.00088 * 354.52290 * 12 10 9 40 40 H 1.07995 * 119.96556 * 0.27630 * 14 13 12 41 41 H 1.08002 * 119.92797 * 180.02562 * 15 14 13 42 42 H 1.07997 * 119.97069 * 180.02562 * 16 15 14 43 43 H 0.97006 * 119.99549 * 179.97438 * 22 21 19 44 44 H 1.08000 * 120.06765 * 359.69956 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3138 6 16 4.1695 -1.4690 2.7945 7 6 5.9655 -1.2337 2.6969 8 8 3.8668 -2.8540 2.6980 9 7 2.0184 -0.6906 -1.1962 10 6 2.1471 -0.0183 -2.3571 11 8 1.8576 1.1614 -2.4118 12 7 2.5969 -0.6535 -3.4574 13 6 2.6224 0.0120 -4.6883 14 6 1.6266 0.9282 -5.0043 15 6 1.6481 1.5814 -6.2216 16 6 2.6586 1.3256 -7.1284 17 6 3.6569 0.4108 -6.8184 18 8 4.6492 0.1597 -7.7100 19 6 5.5189 -0.8221 -7.3977 20 1 5.3580 -1.4259 -6.5168 21 6 6.6198 -1.0566 -8.2074 22 7 6.8160 -0.3208 -9.2801 23 14 7.8243 -2.4173 -7.7750 24 1 7.1120 -3.7201 -7.7518 25 1 8.9062 -2.4621 -8.7912 26 1 8.4126 -2.1511 -6.4377 27 6 3.6385 -0.2466 -5.5963 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.6053 -0.2618 2.1370 32 1 1.7517 -1.7715 1.2056 33 1 3.9995 -1.0727 0.4261 34 1 3.8531 0.4371 1.3574 35 1 6.1933 -0.1679 2.7066 36 1 6.4420 -1.7153 3.5509 37 1 6.3405 -1.6770 1.7744 38 1 2.2491 -1.6318 -1.1526 39 1 2.9029 -1.5719 -3.3962 40 1 0.8352 1.1299 -4.2977 41 1 0.8732 2.2934 -6.4648 42 1 2.6730 1.8381 -8.0789 43 1 7.5864 -0.4846 -9.8463 44 1 4.4138 -0.9580 -5.3528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268858934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:23 Heat of formation + Delta-G solvation = -98.742879 kcal Electronic energy + Delta-G solvation = -26547.561653 eV Core-core repulsion = 22591.404263 eV Total energy + Delta-G solvation = -3956.157389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.75342 -40.54037 -38.58587 -37.35763 -36.77289 -35.65111 -34.27739 -33.34699 -31.19690 -30.70125 -29.85461 -29.68615 -27.31984 -25.14798 -23.92309 -23.50742 -22.02054 -21.68702 -20.17040 -19.46027 -19.06740 -18.35464 -17.53279 -16.91445 -16.73000 -16.56333 -16.15125 -16.02083 -15.91520 -15.79067 -15.53947 -15.44482 -15.25693 -14.66388 -14.56248 -14.26747 -14.15720 -13.82792 -13.60016 -13.53363 -13.23505 -13.05392 -12.81032 -12.76538 -12.64511 -12.55670 -12.48938 -12.21913 -12.18024 -11.85222 -11.51980 -11.35627 -11.12971 -11.04872 -10.75313 -10.17194 -9.35770 -9.18188 -8.86395 -8.48901 -6.17563 0.43311 0.67561 0.69213 1.32177 1.42579 1.48336 1.55115 1.78145 2.04049 2.14948 2.82529 2.89694 3.11996 3.15681 3.47741 3.81251 3.91883 4.04116 4.09977 4.25887 4.31201 4.42392 4.44610 4.49812 4.53392 4.61439 4.70721 4.75243 4.84508 4.88444 4.98525 5.06055 5.08286 5.13879 5.19097 5.34478 5.36349 5.46763 5.55330 5.65803 5.67985 5.92862 5.99436 6.19317 6.89409 6.95419 7.43712 7.75366 8.74039 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009909 B = 0.002683 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.933958 B =10432.349675 C =12851.193043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.160 3.840 3 H 0.082 0.918 4 C -0.104 4.104 5 C -0.453 4.453 6 S 1.308 4.692 7 C -0.494 4.494 8 O -0.927 6.927 9 N -0.726 5.726 10 C 0.702 3.298 11 O -0.605 6.605 12 N -0.680 5.680 13 C 0.207 3.793 14 C -0.197 4.197 15 C -0.050 4.050 16 C -0.215 4.215 17 C 0.135 3.865 18 O -0.225 6.225 19 C -0.414 4.414 20 H 0.100 0.900 21 C -0.021 4.021 22 N -0.919 5.919 23 Si 1.017 2.983 24 H -0.257 1.257 25 H -0.271 1.271 26 H -0.260 1.260 27 C -0.263 4.263 28 H 0.093 0.907 29 H 0.036 0.964 30 H 0.061 0.939 31 H 0.131 0.869 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.111 0.889 37 H 0.058 0.942 38 H 0.405 0.595 39 H 0.416 0.584 40 H 0.129 0.871 41 H 0.155 0.845 42 H 0.121 0.879 43 H 0.273 0.727 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.680 -0.318 29.224 30.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.054 3.946 3 H 0.101 0.899 4 C -0.142 4.142 5 C -0.591 4.591 6 S 1.508 4.492 7 C -0.653 4.653 8 O -0.922 6.922 9 N -0.381 5.381 10 C 0.403 3.597 11 O -0.484 6.484 12 N -0.328 5.328 13 C 0.111 3.889 14 C -0.218 4.218 15 C -0.068 4.068 16 C -0.235 4.235 17 C 0.084 3.916 18 O -0.132 6.132 19 C -0.490 4.490 20 H 0.118 0.882 21 C -0.218 4.218 22 N -0.557 5.557 23 Si 0.836 3.164 24 H -0.181 1.181 25 H -0.196 1.196 26 H -0.184 1.184 27 C -0.285 4.285 28 H 0.112 0.888 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.149 0.851 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.130 0.870 37 H 0.078 0.922 38 H 0.240 0.760 39 H 0.253 0.747 40 H 0.147 0.853 41 H 0.173 0.827 42 H 0.139 0.861 43 H 0.082 0.918 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.275 0.330 29.592 31.013 hybrid contribution 2.054 -2.303 -2.446 3.938 sum -7.220 -1.973 27.146 28.159 Atomic orbital electron populations 1.22193 0.94561 1.02519 1.02797 1.21048 0.94235 0.97019 0.82267 0.89943 1.21564 0.92420 1.01607 0.98645 1.27772 1.03010 1.12532 1.15754 1.69587 0.86767 0.91214 1.01645 1.27689 1.20680 1.10441 1.06454 1.93005 1.80532 1.34935 1.83770 1.45266 1.70604 1.13963 1.08302 1.16043 0.78149 0.84815 0.80712 1.90917 1.57419 1.15339 1.84714 1.42535 1.67570 1.16976 1.05689 1.17183 0.93061 0.94516 0.84106 1.20827 1.00321 1.02377 0.98280 1.20919 0.96625 0.97578 0.91687 1.20474 0.96781 1.03708 1.02487 1.19596 0.89303 0.93859 0.88856 1.83981 1.35776 1.51535 1.41862 1.21735 1.04538 1.10084 1.12661 0.88223 1.26554 0.98862 1.01399 0.95027 1.70176 1.29771 1.40781 1.14938 0.84683 0.76566 0.76608 0.78569 1.18078 1.19556 1.18411 1.20792 1.01816 1.09652 0.96244 0.88776 0.94480 0.91990 0.85085 0.91537 0.91649 0.83856 0.83979 0.87046 0.92223 0.75988 0.74737 0.85322 0.82703 0.86141 0.91769 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.48 71.98 0.68 -1.59 16 2 C 0.16 2.38 2.57 44.99 0.12 2.50 16 3 H 0.08 1.47 7.58 -2.39 -0.02 1.45 16 4 C -0.10 -0.91 4.76 30.59 0.15 -0.76 16 5 C -0.45 -4.04 5.81 71.98 0.42 -3.62 16 6 S 1.31 10.32 13.80 -56.49 -0.78 9.54 16 7 C -0.49 -3.98 10.74 113.37 1.22 -2.76 16 8 O -0.93 -21.85 18.14 -148.98 -2.70 -24.55 16 9 N -0.73 -14.12 4.53 -457.81 -2.08 -16.19 16 10 C 0.70 20.26 8.25 179.06 1.48 21.73 16 11 O -0.61 -21.81 13.80 -4.01 -0.06 -21.87 16 12 N -0.68 -20.40 5.34 -317.23 -1.69 -22.09 16 13 C 0.21 7.94 6.24 38.13 0.24 8.18 16 14 C -0.20 -7.42 8.66 22.42 0.19 -7.22 16 15 C -0.05 -1.83 10.03 22.23 0.22 -1.60 16 16 C -0.21 -9.45 9.99 22.41 0.22 -9.23 16 17 C 0.14 6.87 6.64 22.56 0.15 7.02 16 18 O -0.23 -13.61 9.76 -22.69 -0.22 -13.83 16 19 C -0.41 -24.07 9.44 67.92 0.64 -23.43 16 20 H 0.10 5.28 5.29 -2.91 -0.02 5.27 16 21 C -0.02 -1.17 5.49 84.83 0.47 -0.70 16 22 N -0.92 -56.43 13.67 21.61 0.30 -56.13 16 23 Si 1.02 42.71 29.55 68.60 2.03 44.74 16 24 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 26 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 27 C -0.26 -11.78 9.05 22.51 0.20 -11.57 16 28 H 0.09 0.81 8.14 -2.39 -0.02 0.80 16 29 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.93 7.75 -2.39 -0.02 0.91 16 34 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.40 6.28 8.62 -92.71 -0.80 5.48 16 39 H 0.42 9.93 8.84 -92.71 -0.82 9.11 16 40 H 0.13 4.67 6.53 -2.91 -0.02 4.65 16 41 H 0.16 4.45 8.06 -2.91 -0.02 4.43 16 42 H 0.12 5.13 8.06 -2.91 -0.02 5.11 16 43 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 44 H 0.13 5.55 5.71 -2.91 -0.02 5.54 16 Total: -1.00 -91.04 385.11 0.61 -90.43 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: -0.58 Total: 33.03 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 6.40 Total: -23.06 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -3.48 Total: -94.42 kcal Atomic # 8 Polarization: -57.28 SS G_CDS: -2.98 Total: -60.26 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: 10.32 SS G_CDS: -0.78 Total: 9.54 kcal Total: -91.04 0.61 -90.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268858934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.314 kcal (2) G-P(sol) polarization free energy of solvation -91.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds