Wall clock time and date at job start Sat Apr 11 2020 05:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46717 * 2 1 4 4 N 1.46495 * 109.47312 * 119.99678 * 2 1 3 5 5 S 1.65605 * 119.99725 * 95.00256 * 4 2 1 6 6 O 1.42102 * 104.27817 * 308.93160 * 5 4 2 7 7 O 1.42094 * 104.27813 * 181.06889 * 5 4 2 8 8 C 1.81407 * 104.44885 * 64.99786 * 5 4 2 9 9 C 1.52999 * 109.47168 * 179.97438 * 8 5 4 10 10 N 1.46492 * 109.47134 * 180.02562 * 9 8 5 11 11 C 1.34777 * 120.00403 * 180.02562 * 10 9 8 12 12 O 1.21592 * 119.99740 * 0.02562 * 11 10 9 13 13 C 1.47639 * 120.00339 * 180.02562 * 11 10 9 14 14 C 1.40007 * 119.89573 * 0.24611 * 13 11 10 15 15 C 1.36318 * 120.10468 * 180.25591 * 14 13 11 16 16 C 1.40884 * 119.89177 * 359.47662 * 15 14 13 17 17 C 1.41116 * 120.10368 * 180.29746 * 16 15 14 18 18 H 1.07997 * 120.00134 * 154.53831 * 17 16 15 19 19 C 1.40227 * 119.99714 * 334.53632 * 17 16 15 20 20 N 1.30644 * 120.00033 * 343.04996 * 19 17 16 21 21 Si 1.86799 * 119.99848 * 163.05218 * 19 17 16 22 22 H 1.48501 * 109.47314 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47265 * 119.99809 * 21 19 17 24 24 H 1.48498 * 109.47305 * 239.99792 * 21 19 17 25 25 C 1.40889 * 119.79628 * 0.27580 * 16 15 14 26 26 C 1.36316 * 119.88883 * 359.97438 * 25 16 15 27 27 H 1.08996 * 109.47370 * 299.99802 * 1 2 3 28 28 H 1.08997 * 109.47129 * 59.99886 * 1 2 3 29 29 H 1.09007 * 109.46747 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47030 * 240.00392 * 2 1 3 31 31 H 1.09004 * 109.46808 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47125 * 299.99838 * 3 2 1 33 33 H 1.08996 * 109.47039 * 59.99995 * 3 2 1 34 34 H 0.96998 * 120.00592 * 275.00584 * 4 2 1 35 35 H 1.08997 * 109.46674 * 60.00107 * 8 5 4 36 36 H 1.08995 * 109.47083 * 300.00500 * 8 5 4 37 37 H 1.09000 * 109.46513 * 60.00355 * 9 8 5 38 38 H 1.08994 * 109.47508 * 300.00851 * 9 8 5 39 39 H 0.97005 * 120.00342 * 0.02562 * 10 9 8 40 40 H 1.08000 * 119.95276 * 0.03420 * 14 13 11 41 41 H 1.08007 * 120.05277 * 179.74755 * 15 14 13 42 42 H 0.97005 * 119.99903 * 179.97438 * 20 19 17 43 43 H 1.08002 * 120.05358 * 180.02562 * 25 16 15 44 44 H 1.08002 * 119.94674 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1961 5 16 2.4123 -2.2973 1.1218 6 8 1.2753 -2.9098 0.5291 7 8 2.8125 -2.6217 2.4461 8 6 3.8314 -2.3637 -0.0063 9 6 4.2944 -3.8140 -0.1587 10 7 5.4407 -3.8675 -1.0692 11 6 6.0195 -5.0506 -1.3554 12 8 5.5898 -6.0736 -0.8581 13 6 7.1752 -5.1044 -2.2725 14 6 7.6714 -3.9246 -2.8398 15 6 8.7350 -3.9699 -3.6913 16 6 9.3419 -5.2054 -3.9915 17 6 10.4471 -5.2568 -4.8674 18 1 11.1564 -6.0680 -4.7948 19 6 10.6243 -4.2547 -5.8321 20 7 9.6285 -3.4712 -6.1506 21 14 12.2840 -4.0401 -6.6619 22 1 13.2380 -5.0453 -6.1282 23 1 12.1331 -4.2293 -8.1270 24 1 12.8006 -2.6748 -6.3898 25 6 8.8422 -6.3895 -3.4141 26 6 7.7750 -6.3347 -2.5678 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 2.1110 -0.2067 2.0317 35 1 4.6460 -1.7634 0.3989 36 1 3.5400 -1.9706 -0.9802 37 1 3.4799 -4.4146 -0.5637 38 1 4.5858 -4.2067 0.8154 39 1 5.7834 -3.0514 -1.4662 40 1 7.2087 -2.9773 -2.6053 41 1 9.1146 -3.0597 -4.1316 42 1 9.7512 -2.7778 -6.8178 43 1 9.3045 -7.3388 -3.6410 44 1 7.3910 -7.2418 -2.1250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270373714.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:35 Heat of formation + Delta-G solvation = -105.482119 kcal Electronic energy + Delta-G solvation = -26388.182012 eV Core-core repulsion = 22431.732387 eV Total energy + Delta-G solvation = -3956.449625 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -39.21350 -37.61886 -37.23874 -37.05748 -36.20680 -35.10226 -33.92451 -31.34529 -30.98057 -29.80150 -29.48904 -27.59355 -26.09378 -23.77917 -21.96002 -21.85851 -20.96217 -19.99803 -19.61622 -18.08925 -17.58538 -17.07749 -16.75841 -16.43269 -15.87227 -15.55567 -15.24171 -14.93378 -14.72835 -14.13807 -13.98160 -13.78541 -13.66860 -13.29492 -13.25220 -12.84159 -12.65750 -12.54288 -12.37039 -12.28274 -12.13936 -12.04473 -11.95709 -11.93748 -11.83440 -11.45372 -11.39806 -11.32125 -11.21341 -10.99429 -10.70105 -10.09644 -9.99897 -9.62167 -9.42132 -9.06980 -8.79247 -7.78578 -7.59950 -7.08701 -4.66119 -0.10623 2.15269 2.36161 2.86250 2.91522 2.97027 2.97950 3.35028 3.69757 3.77228 3.78603 3.87353 4.13875 4.26455 4.46035 4.52831 4.58530 4.67242 4.91631 5.05442 5.18987 5.32797 5.42654 5.44656 5.48359 5.53173 5.61541 5.78989 5.92406 5.94647 5.99645 6.26504 6.56089 6.70457 6.74023 6.77554 6.97258 7.06914 7.37800 7.57693 7.71017 7.80380 8.01206 8.10780 8.34190 8.57535 8.69092 8.95210 9.83349 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016813 B = 0.002160 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.955354 B =12958.088881 C =14225.320336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.143 3.857 3 C -0.161 4.161 4 N -1.115 6.115 5 S 2.620 3.380 6 O -0.947 6.947 7 O -0.953 6.953 8 C -0.649 4.649 9 C 0.137 3.863 10 N -0.737 5.737 11 C 0.571 3.429 12 O -0.571 6.571 13 C -0.284 4.284 14 C -0.063 4.063 15 C -0.177 4.177 16 C 0.128 3.872 17 C -0.441 4.441 18 H 0.086 0.914 19 C 0.073 3.927 20 N -0.772 5.772 21 Si 0.914 3.086 22 H -0.257 1.257 23 H -0.271 1.271 24 H -0.269 1.269 25 C -0.237 4.237 26 C -0.021 4.021 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.418 0.582 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.400 0.600 40 H 0.088 0.912 41 H 0.121 0.879 42 H 0.286 0.714 43 H 0.099 0.901 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.475 13.449 7.659 19.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.036 3.964 3 C -0.220 4.220 4 N -0.875 5.875 5 S 2.710 3.290 6 O -0.937 6.937 7 O -0.943 6.943 8 C -0.777 4.777 9 C 0.011 3.989 10 N -0.392 5.392 11 C 0.366 3.634 12 O -0.452 6.452 13 C -0.289 4.289 14 C -0.083 4.083 15 C -0.196 4.196 16 C 0.125 3.875 17 C -0.468 4.468 18 H 0.104 0.896 19 C -0.148 4.148 20 N -0.396 5.396 21 Si 0.737 3.263 22 H -0.180 1.180 23 H -0.196 1.196 24 H -0.194 1.194 25 C -0.257 4.257 26 C -0.040 4.040 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.252 0.748 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.236 0.764 40 H 0.106 0.894 41 H 0.138 0.862 42 H 0.097 0.903 43 H 0.117 0.883 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.319 12.123 8.121 19.097 hybrid contribution 1.341 1.335 -0.823 2.064 sum -10.978 13.459 7.298 18.839 Atomic orbital electron populations 1.22341 0.94701 1.03822 1.02394 1.20800 0.95040 0.94278 0.86295 1.22129 1.01869 0.94947 1.03044 1.55780 1.81754 1.31058 1.18893 1.04777 0.76089 0.72899 0.75204 1.93624 1.45865 1.74488 1.79682 1.93624 1.84394 1.82002 1.34283 1.30959 1.21865 1.06092 1.18824 1.20726 0.91175 0.90738 0.96288 1.45820 1.33196 1.10591 1.49607 1.18664 0.82615 0.81873 0.80264 1.90657 1.65745 1.33978 1.54863 1.18840 1.03529 0.95179 1.11354 1.20455 0.96525 0.94774 0.96501 1.20974 0.99171 0.98458 1.01032 1.17810 0.90175 0.90905 0.88608 1.19894 1.07550 1.07267 1.12116 0.89615 1.26110 0.98373 0.94016 0.96269 1.69745 1.31255 1.14271 1.24283 0.86154 0.81512 0.79550 0.79047 1.18038 1.19639 1.19393 1.20736 1.01102 0.97317 1.06518 1.20379 0.93891 0.95487 0.94281 0.92099 0.91457 0.90792 0.89797 0.91750 0.90987 0.91819 0.74782 0.84080 0.84373 0.90429 0.90465 0.76374 0.89397 0.86167 0.90274 0.88271 0.87977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 9.52 37.16 0.35 -0.74 16 2 C 0.14 0.81 3.29 -67.93 -0.22 0.58 16 3 C -0.16 -0.65 9.44 37.16 0.35 -0.30 16 4 N -1.12 -7.13 5.36 -4.89 -0.03 -7.16 16 5 S 2.62 25.11 5.38 -107.50 -0.58 24.53 16 6 O -0.95 -12.08 17.11 -57.54 -0.98 -13.07 16 7 O -0.95 -12.33 18.08 -57.54 -1.04 -13.37 16 8 C -0.65 -5.54 6.07 37.16 0.23 -5.31 16 9 C 0.14 1.85 5.68 -4.05 -0.02 1.83 16 10 N -0.74 -11.82 5.50 -61.32 -0.34 -12.16 16 11 C 0.57 12.00 7.76 -12.42 -0.10 11.90 16 12 O -0.57 -13.57 16.32 5.29 0.09 -13.49 16 13 C -0.28 -6.38 5.89 -104.73 -0.62 -7.00 16 14 C -0.06 -1.36 9.47 -39.61 -0.38 -1.73 16 15 C -0.18 -4.22 8.63 -39.27 -0.34 -4.56 16 16 C 0.13 3.20 5.57 -106.80 -0.59 2.61 16 17 C -0.44 -10.74 9.05 -37.74 -0.34 -11.08 16 18 H 0.09 2.00 7.90 -52.49 -0.41 1.59 16 19 C 0.07 1.67 5.15 -17.31 -0.09 1.59 16 20 N -0.77 -18.04 10.95 55.56 0.61 -17.43 16 21 Si 0.91 16.88 29.59 -169.99 -5.03 11.85 16 22 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 23 H -0.27 -4.96 7.11 56.52 0.40 -4.55 16 24 H -0.27 -4.88 7.11 56.52 0.40 -4.47 16 25 C -0.24 -5.66 9.73 -39.27 -0.38 -6.04 16 26 C -0.02 -0.49 9.52 -39.61 -0.38 -0.87 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.61 7.43 -51.93 -0.39 0.23 16 30 H 0.08 0.40 7.15 -51.93 -0.37 0.03 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.42 2.02 8.80 -34.47 -0.30 1.71 16 35 H 0.14 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.14 0.87 7.44 -51.93 -0.39 0.49 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.40 5.44 6.47 -40.82 -0.26 5.18 16 40 H 0.09 1.55 6.37 -52.49 -0.33 1.22 16 41 H 0.12 2.89 6.18 -52.48 -0.32 2.56 16 42 H 0.29 5.97 8.29 -40.82 -0.34 5.63 16 43 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 44 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -33.41 381.26 -10.21 -43.62 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -6.12 Total: 10.04 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -2.53 Total: -19.12 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.24 Total: -36.75 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -1.94 Total: -39.93 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.85 kcal Atomic # 16 Polarization: 25.11 SS G_CDS: -0.58 Total: 24.53 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.41 -10.21 -43.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270373714.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.859 kcal (2) G-P(sol) polarization free energy of solvation -33.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds