Wall clock time and date at job start Sat Apr 11 2020 05:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65597 * 119.99926 * 2 1 4 4 O 1.42096 * 106.40195 * 178.26439 * 3 2 1 5 5 O 1.42108 * 106.40105 * 311.18495 * 3 2 1 6 6 C 1.76199 * 107.22117 * 64.72196 * 3 2 1 7 7 C 1.38257 * 120.00261 * 269.73039 * 6 3 2 8 8 C 1.38216 * 120.00298 * 179.74025 * 7 6 3 9 9 C 1.38251 * 119.99681 * 0.55467 * 8 7 6 10 10 C 1.38221 * 120.00336 * 359.69652 * 9 8 7 11 11 C 1.50696 * 120.00241 * 180.02562 * 10 9 8 12 12 H 1.09001 * 109.47032 * 160.02479 * 11 10 9 13 13 C 1.53003 * 109.46850 * 280.02173 * 11 10 9 14 14 N 1.46496 * 109.47364 * 40.02196 * 11 10 9 15 15 C 1.34774 * 120.00261 * 155.00341 * 14 11 10 16 16 O 1.21280 * 119.99799 * 359.97438 * 15 14 11 17 17 C 1.50695 * 120.00376 * 180.02562 * 15 14 11 18 18 C 1.52998 * 109.47464 * 179.97438 * 17 15 14 19 19 C 1.50697 * 109.47147 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00229 * 0.02562 * 19 18 17 21 21 C 1.37887 * 119.99792 * 179.97438 * 19 18 17 22 22 N 1.31509 * 119.99836 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99713 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47282 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46801 * 120.00311 * 23 21 19 26 26 H 1.48505 * 109.47109 * 240.00179 * 23 21 19 27 27 C 1.38213 * 120.00144 * 89.99671 * 6 3 2 28 28 H 1.08998 * 109.47492 * 60.27856 * 1 2 3 29 29 H 1.08998 * 109.47377 * 180.28047 * 1 2 3 30 30 H 1.09009 * 109.47454 * 300.27562 * 1 2 3 31 31 H 0.97001 * 119.99790 * 179.71788 * 2 1 3 32 32 H 1.08000 * 119.99786 * 359.97438 * 7 6 3 33 33 H 1.07994 * 120.00153 * 180.27199 * 8 7 6 34 34 H 1.07997 * 120.00225 * 179.72231 * 9 8 7 35 35 H 1.08998 * 109.46860 * 180.02562 * 13 11 10 36 36 H 1.09002 * 109.46819 * 299.99824 * 13 11 10 37 37 H 1.09000 * 109.47544 * 59.99731 * 13 11 10 38 38 H 0.96998 * 120.00024 * 334.99681 * 14 11 10 39 39 H 1.08998 * 109.46935 * 299.99981 * 17 15 14 40 40 H 1.08998 * 109.46894 * 59.99408 * 17 15 14 41 41 H 1.08998 * 109.47251 * 300.00059 * 18 17 15 42 42 H 1.09008 * 109.47220 * 59.99875 * 18 17 15 43 43 H 0.97002 * 120.00046 * 180.02562 * 22 21 19 44 44 H 1.08007 * 119.99465 * 0.02562 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6735 1.1004 0.0413 5 8 1.7161 2.2305 -1.0260 6 6 1.9314 2.2452 1.5218 7 6 0.8552 3.1091 1.6062 8 6 0.5684 3.7412 2.8014 9 6 1.3645 3.5185 3.9095 10 6 2.4435 2.6589 3.8239 11 6 3.3109 2.4157 5.0320 12 1 3.8635 1.4853 4.9011 13 6 4.2957 3.5753 5.1944 14 7 2.4685 2.3195 6.2267 15 6 2.9006 1.6320 7.3024 16 8 3.9866 1.0926 7.2811 17 6 2.0338 1.5325 8.5311 18 6 2.7532 0.7037 9.5970 19 6 1.8867 0.6048 10.8260 20 1 0.9193 1.0847 10.8447 21 6 2.3284 -0.0994 11.9261 22 7 3.5061 -0.6842 11.9031 23 14 1.2545 -0.2213 13.4497 24 1 -0.0128 0.5186 13.2226 25 1 0.9511 -1.6481 13.7285 26 1 1.9714 0.3680 14.6091 27 6 2.7269 2.0221 2.6299 28 1 -0.3634 0.5095 -0.8924 29 1 -0.3634 -1.0276 0.0050 30 1 -0.3634 0.5181 0.8876 31 1 1.9500 -0.8401 0.0041 32 1 0.2364 3.2870 0.7391 33 1 -0.2748 4.4126 2.8684 34 1 1.1431 4.0158 4.8423 35 1 4.9234 3.3991 6.0679 36 1 4.9225 3.6468 4.3055 37 1 3.7432 4.5057 5.3252 38 1 1.5998 2.7506 6.2436 39 1 1.8373 2.5320 8.9189 40 1 1.0907 1.0513 8.2724 41 1 2.9494 -0.2958 9.2090 42 1 3.6966 1.1846 9.8558 43 1 3.8167 -1.1798 12.6769 44 1 3.5704 1.3509 2.5627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291626071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:35 Heat of formation + Delta-G solvation = -126.821770 kcal Electronic energy + Delta-G solvation = -26681.775570 eV Core-core repulsion = 22724.400589 eV Total energy + Delta-G solvation = -3957.374981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.26856 -40.11374 -38.41321 -37.03664 -36.73162 -35.90164 -35.53817 -33.40934 -32.45277 -32.28015 -30.32844 -27.72861 -26.84729 -25.24836 -24.55954 -23.56944 -22.17468 -21.19716 -20.45250 -19.12921 -18.76148 -18.60328 -17.64588 -17.25187 -17.15512 -17.00895 -16.51328 -16.41661 -16.04900 -15.66727 -15.27229 -14.89257 -14.83468 -14.65111 -14.46722 -14.24515 -14.09481 -13.80929 -13.51721 -13.43492 -13.30178 -13.26323 -13.21490 -13.14322 -12.85348 -12.71865 -12.55609 -12.44113 -11.99796 -11.91173 -11.88416 -11.63033 -11.27911 -10.78249 -10.58731 -10.57515 -10.41541 -10.22935 -9.92222 -8.17919 -6.31738 -0.69415 -0.26385 0.16408 1.42591 1.43792 1.56982 1.70725 1.97015 2.15047 2.41904 2.47535 2.72628 3.15426 3.19252 3.48312 3.76549 3.96104 4.01021 4.09063 4.16070 4.21266 4.25492 4.38178 4.50516 4.56565 4.57933 4.66662 4.68675 4.82413 4.86483 4.88911 4.97890 5.00599 5.08387 5.15652 5.21747 5.25845 5.48186 5.54014 5.64069 5.75932 5.86227 6.03993 6.17944 6.57276 6.87386 7.33051 7.38760 8.94947 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019386 B = 0.002079 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.964025 B =13465.118284 C =13671.039959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -1.114 6.114 3 S 2.714 3.286 4 O -0.993 6.993 5 O -0.980 6.980 6 C -0.677 4.677 7 C -0.027 4.027 8 C -0.127 4.127 9 C -0.056 4.056 10 C -0.114 4.114 11 C 0.180 3.820 12 H 0.073 0.927 13 C -0.155 4.155 14 N -0.713 5.713 15 C 0.514 3.486 16 O -0.585 6.585 17 C -0.119 4.119 18 C 0.041 3.959 19 C -0.540 4.540 20 H 0.077 0.923 21 C -0.009 4.009 22 N -0.938 5.938 23 Si 0.973 3.027 24 H -0.251 1.251 25 H -0.281 1.281 26 H -0.282 1.282 27 C -0.025 4.025 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.428 0.572 32 H 0.160 0.840 33 H 0.169 0.831 34 H 0.155 0.845 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.415 0.585 39 H 0.107 0.893 40 H 0.105 0.895 41 H -0.019 1.019 42 H -0.018 1.018 43 H 0.262 0.738 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.411 9.105 -26.432 30.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.876 5.876 3 S 2.804 3.196 4 O -0.983 6.983 5 O -0.969 6.969 6 C -0.765 4.765 7 C -0.046 4.046 8 C -0.145 4.145 9 C -0.074 4.074 10 C -0.116 4.116 11 C 0.075 3.925 12 H 0.091 0.909 13 C -0.213 4.213 14 N -0.368 5.368 15 C 0.303 3.697 16 O -0.464 6.464 17 C -0.158 4.158 18 C 0.004 3.996 19 C -0.578 4.578 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.579 5.579 23 Si 0.797 3.203 24 H -0.175 1.175 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.045 4.045 28 H 0.090 0.910 29 H 0.123 0.877 30 H 0.088 0.912 31 H 0.264 0.736 32 H 0.178 0.822 33 H 0.187 0.813 34 H 0.172 0.828 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.253 0.747 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.000 1.000 42 H 0.000 1.000 43 H 0.071 0.929 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.125 9.091 -27.039 30.619 hybrid contribution -0.027 -0.638 1.679 1.796 sum -11.151 8.453 -25.360 28.964 Atomic orbital electron populations 1.21791 0.76918 1.06136 1.02639 1.55075 1.17184 1.23644 1.91715 1.01081 0.72027 0.72901 0.73593 1.93564 1.33195 1.83934 1.87617 1.93555 1.79109 1.69635 1.54644 1.30756 1.08187 1.16987 1.20574 1.21318 0.92847 0.90925 0.99494 1.21666 1.00795 1.00358 0.91728 1.21609 0.91900 0.93600 1.00290 1.19946 0.97882 0.99555 0.94169 1.19712 0.90782 0.99866 0.82149 0.90893 1.22143 0.98977 0.97936 1.02282 1.46030 1.22229 1.54974 1.13562 1.21348 0.86728 0.76454 0.85214 1.90668 1.24553 1.47990 1.83203 1.21639 0.99022 1.03384 0.91779 1.18696 0.94526 0.93545 0.92880 1.21749 1.03977 1.32760 0.99336 0.90486 1.26148 0.96505 0.95074 1.02860 1.70185 1.20941 1.35284 1.31444 0.85278 0.79009 0.77928 0.78043 1.17472 1.20726 1.20743 1.20809 0.96666 0.95812 0.91179 0.90965 0.87676 0.91211 0.73607 0.82225 0.81333 0.82788 0.93823 0.90507 0.90276 0.74692 0.87518 0.87692 1.00011 0.99969 0.92904 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 11.13 127.77 1.42 1.87 16 2 N -1.11 -11.87 6.19 -206.53 -1.28 -13.15 16 3 S 2.71 46.58 5.74 -56.49 -0.32 46.26 16 4 O -0.99 -24.10 17.28 -128.00 -2.21 -26.31 16 5 O -0.98 -20.73 17.02 -128.00 -2.18 -22.91 16 6 C -0.68 -11.04 5.94 22.27 0.13 -10.90 16 7 C -0.03 -0.33 9.52 22.27 0.21 -0.11 16 8 C -0.13 -1.26 10.05 22.27 0.22 -1.04 16 9 C -0.06 -0.71 9.06 22.27 0.20 -0.50 16 10 C -0.11 -2.10 4.95 -19.87 -0.10 -2.20 16 11 C 0.18 4.29 2.78 44.25 0.12 4.41 16 12 H 0.07 2.14 7.44 -2.39 -0.02 2.12 16 13 C -0.16 -3.49 9.46 71.98 0.68 -2.81 16 14 N -0.71 -17.81 5.03 -446.11 -2.24 -20.06 16 15 C 0.51 19.01 7.79 87.66 0.68 19.70 16 16 O -0.58 -28.02 15.64 -3.03 -0.05 -28.07 16 17 C -0.12 -4.55 5.64 29.85 0.17 -4.38 16 18 C 0.04 2.26 4.26 29.85 0.13 2.38 16 19 C -0.54 -30.25 9.11 25.60 0.23 -30.01 16 20 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 21 C -0.01 -0.50 5.46 84.66 0.46 -0.03 16 22 N -0.94 -59.30 13.29 21.45 0.28 -59.02 16 23 Si 0.97 43.77 29.54 68.60 2.03 45.79 16 24 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 27 C -0.02 -0.48 9.15 22.27 0.20 -0.27 16 28 H 0.07 0.43 8.11 -2.39 -0.02 0.42 16 29 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.07 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.43 3.36 8.96 -96.74 -0.87 2.50 16 32 H 0.16 1.31 7.61 -2.91 -0.02 1.29 16 33 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 34 H 0.15 1.22 6.92 -2.91 -0.02 1.20 16 35 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.41 7.05 6.87 -92.71 -0.64 6.41 16 39 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 40 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 41 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 42 H -0.02 -1.13 8.10 -2.38 -0.02 -1.15 16 43 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.14 2.69 7.60 -2.91 -0.02 2.67 16 Total: -1.00 -87.74 386.15 -1.67 -89.41 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -0.48 Total: 11.96 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: 4.78 Total: -23.90 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -3.23 Total: -92.23 kcal Atomic # 8 Polarization: -72.85 SS G_CDS: -4.44 Total: -77.29 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 46.58 SS G_CDS: -0.32 Total: 46.26 kcal Total: -87.74 -1.67 -89.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291626071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.413 kcal (2) G-P(sol) polarization free energy of solvation -87.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds