Wall clock time and date at job start Sat Apr 11 2020 05:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 S 1.65600 * 120.00199 * 2 1 4 4 O 1.42094 * 106.39947 * 311.45777 * 3 2 1 5 5 O 1.42095 * 106.39887 * 178.53990 * 3 2 1 6 6 C 1.76194 * 107.21818 * 65.00245 * 3 2 1 7 7 C 1.38253 * 120.00567 * 89.99991 * 6 3 2 8 8 C 1.38215 * 120.00819 * 180.02562 * 7 6 3 9 9 C 1.38260 * 119.99584 * 0.02562 * 8 7 6 10 10 C 1.38216 * 119.99776 * 359.97438 * 9 8 7 11 11 C 1.50698 * 119.99615 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.46867 * 199.99852 * 11 10 9 13 13 C 1.53000 * 109.47254 * 80.00296 * 11 10 9 14 14 N 1.46496 * 109.47526 * 319.99959 * 11 10 9 15 15 C 1.34777 * 120.00258 * 205.00423 * 14 11 10 16 16 O 1.21279 * 120.00166 * 359.97438 * 15 14 11 17 17 C 1.50706 * 119.99762 * 179.97438 * 15 14 11 18 18 C 1.53002 * 109.46925 * 179.97438 * 17 15 14 19 19 C 1.50696 * 109.47300 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99822 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00339 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99769 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00300 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47086 * 59.99960 * 23 21 19 25 25 H 1.48503 * 109.47151 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46879 * 299.99904 * 23 21 19 27 27 C 1.38215 * 119.99921 * 270.27624 * 6 3 2 28 28 H 1.08994 * 109.47119 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46525 * 299.99840 * 1 2 3 30 30 H 1.09002 * 109.46998 * 59.99651 * 1 2 3 31 31 H 0.96999 * 119.99636 * 179.97438 * 2 1 3 32 32 H 1.08005 * 119.99597 * 359.97438 * 7 6 3 33 33 H 1.07995 * 120.00093 * 179.97438 * 8 7 6 34 34 H 1.07992 * 120.00087 * 179.97438 * 9 8 7 35 35 H 1.09002 * 109.46821 * 299.99584 * 13 11 10 36 36 H 1.08992 * 109.47302 * 59.99789 * 13 11 10 37 37 H 1.09006 * 109.47229 * 180.02562 * 13 11 10 38 38 H 0.96999 * 119.99694 * 24.99813 * 14 11 10 39 39 H 1.09000 * 109.47318 * 299.99141 * 17 15 14 40 40 H 1.09000 * 109.47161 * 59.99772 * 17 15 14 41 41 H 1.09004 * 109.46930 * 299.99901 * 18 17 15 42 42 H 1.09004 * 109.47059 * 59.99503 * 18 17 15 43 43 H 0.97000 * 120.00540 * 179.97438 * 22 21 19 44 44 H 1.08003 * 120.00124 * 359.97438 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4341 0.0000 4 8 1.7121 2.2328 -1.0216 5 8 3.6738 1.1001 0.0347 6 6 1.9380 2.2414 1.5253 7 6 2.7383 2.0156 2.6298 8 6 2.4595 2.6484 3.8265 9 6 1.3797 3.5070 3.9192 10 6 0.5796 3.7327 2.8151 11 6 -0.5976 4.6681 2.9164 12 1 -1.2972 4.4607 2.1066 13 6 -0.1103 6.1146 2.8112 14 7 -1.2686 4.4712 4.2037 15 6 -2.5725 4.7842 4.3389 16 8 -3.1904 5.2293 3.3949 17 6 -3.2628 4.5810 5.6631 18 6 -4.7262 5.0119 5.5467 19 6 -5.4164 4.8094 6.8710 20 1 -4.8661 4.4134 7.7116 21 6 -6.7500 5.1306 7.0096 22 7 -7.4199 5.6134 5.9860 23 14 -7.6053 4.8803 8.6514 24 1 -6.9295 5.6971 9.6912 25 1 -9.0257 5.2984 8.5383 26 1 -7.5407 3.4456 9.0294 27 6 0.8558 3.0961 1.6193 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.9500 -0.8401 0.0004 32 1 3.5811 1.3440 2.5577 33 1 3.0845 2.4716 4.6893 34 1 1.1616 4.0012 4.8543 35 1 0.5892 6.3220 3.6210 36 1 0.3888 6.2611 1.8535 37 1 -0.9618 6.7912 2.8849 38 1 -0.7744 4.1155 4.9587 39 1 -3.2148 3.5279 5.9401 40 1 -2.7674 5.1806 6.4268 41 1 -4.7740 6.0651 5.2699 42 1 -5.2218 4.4127 4.7828 43 1 -8.3583 5.8391 6.0834 44 1 0.2281 3.2694 0.7577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291626075.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:40 Heat of formation + Delta-G solvation = -96.814771 kcal Electronic energy + Delta-G solvation = -26770.267378 eV Core-core repulsion = 22814.193598 eV Total energy + Delta-G solvation = -3956.073780 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.29569 -38.94781 -37.61882 -36.23000 -35.61052 -35.40709 -33.48433 -32.03725 -31.67285 -30.82514 -29.37840 -26.41925 -25.83512 -24.30739 -23.72465 -22.13265 -21.08675 -19.75873 -19.73339 -18.31138 -17.95301 -16.98701 -16.77828 -16.41165 -16.08954 -15.81815 -15.35074 -14.98290 -14.75450 -14.60964 -14.43620 -14.19509 -13.90945 -13.65256 -13.32070 -13.25939 -12.90936 -12.73483 -12.54224 -12.44234 -12.31286 -12.25550 -12.06890 -12.03729 -11.83883 -11.21165 -11.19818 -11.12335 -10.93704 -10.64643 -10.08958 -9.99405 -9.81305 -9.70677 -9.40068 -9.20741 -9.03887 -8.91474 -8.34670 -5.98767 -4.03465 -0.02997 0.39723 0.82657 2.57226 3.01513 3.17999 3.31959 3.35835 3.37362 3.38516 3.46817 3.91953 4.24686 4.39933 4.44848 4.54455 4.59660 4.72298 4.94816 4.99351 5.04525 5.16808 5.29435 5.32315 5.36083 5.36544 5.41414 5.48575 5.58055 5.65821 5.75041 5.82296 6.03540 6.12134 6.17495 6.18854 6.37780 6.44302 6.63963 6.84114 7.70620 7.77785 7.82559 8.03936 8.35220 8.70060 9.04795 9.60152 11.12103 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.002127 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.483195 B =13159.234543 C =13466.798505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -1.120 6.120 3 S 2.698 3.302 4 O -0.953 6.953 5 O -0.960 6.960 6 C -0.675 4.675 7 C -0.022 4.022 8 C -0.135 4.135 9 C -0.056 4.056 10 C -0.103 4.103 11 C 0.179 3.821 12 H 0.099 0.901 13 C -0.159 4.159 14 N -0.741 5.741 15 C 0.512 3.488 16 O -0.530 6.530 17 C -0.130 4.130 18 C 0.038 3.962 19 C -0.529 4.529 20 H 0.055 0.945 21 C 0.058 3.942 22 N -0.889 5.889 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C -0.012 4.012 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.419 0.581 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.395 0.605 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.262 0.738 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.564 -11.246 -8.627 27.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.880 5.880 3 S 2.787 3.213 4 O -0.943 6.943 5 O -0.950 6.950 6 C -0.762 4.762 7 C -0.042 4.042 8 C -0.153 4.153 9 C -0.075 4.075 10 C -0.105 4.105 11 C 0.074 3.926 12 H 0.117 0.883 13 C -0.218 4.218 14 N -0.396 5.396 15 C 0.300 3.700 16 O -0.405 6.405 17 C -0.170 4.170 18 C 0.000 4.000 19 C -0.567 4.567 20 H 0.073 0.927 21 C -0.144 4.144 22 N -0.528 5.528 23 Si 0.721 3.279 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.031 4.031 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.253 0.747 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.230 0.770 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.071 0.929 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 23.287 -10.365 -10.048 27.399 hybrid contribution -0.353 -0.564 2.110 2.213 sum 22.934 -10.929 -7.938 26.616 Atomic orbital electron populations 1.21557 0.78010 1.04584 1.02433 1.55295 1.16435 1.24251 1.92021 1.01806 0.72837 0.72759 0.73929 1.93607 1.78607 1.68371 1.53713 1.93594 1.30780 1.83451 1.87205 1.30863 1.07281 1.16199 1.21814 1.20915 0.96157 0.95817 0.91270 1.21291 0.98084 0.97826 0.98146 1.21339 0.92936 0.94927 0.98265 1.20186 0.97666 0.98519 0.94096 1.19736 0.90845 0.93242 0.88761 0.88321 1.22189 1.02037 0.95505 1.02039 1.46390 1.11707 1.68865 1.12615 1.21596 0.80433 0.75921 0.92010 1.90676 1.64794 1.43420 1.41616 1.21879 1.00834 1.02488 0.91778 1.18892 0.86439 0.97650 0.97007 1.21172 0.95274 1.43525 0.96730 0.92696 1.25024 0.97571 0.95212 0.96554 1.69982 1.09368 1.43330 1.30103 0.86650 0.78593 0.78510 0.84141 1.20252 1.21267 1.20264 1.20822 0.93490 0.91087 0.97732 0.89665 0.91903 0.91024 0.74721 0.84221 0.84706 0.84973 0.92402 0.91635 0.90968 0.77034 0.90264 0.90230 0.95809 0.95814 0.92856 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.43 11.14 59.85 0.67 1.09 16 2 N -1.12 -6.50 6.19 -16.63 -0.10 -6.61 16 3 S 2.70 23.69 5.74 -107.50 -0.62 23.08 16 4 O -0.95 -11.29 17.01 -57.18 -0.97 -12.26 16 5 O -0.96 -10.49 17.28 -57.18 -0.99 -11.48 16 6 C -0.67 -5.93 5.95 -39.58 -0.24 -6.17 16 7 C -0.02 -0.17 9.52 -39.58 -0.38 -0.55 16 8 C -0.13 -0.97 10.05 -39.58 -0.40 -1.37 16 9 C -0.06 -0.45 9.06 -39.58 -0.36 -0.81 16 10 C -0.10 -1.01 4.95 -104.62 -0.52 -1.53 16 11 C 0.18 2.12 2.78 -69.09 -0.19 1.93 16 12 H 0.10 1.33 7.44 -51.93 -0.39 0.94 16 13 C -0.16 -1.80 9.46 37.16 0.35 -1.44 16 14 N -0.74 -9.58 5.03 -54.93 -0.28 -9.86 16 15 C 0.51 9.29 7.79 -10.98 -0.09 9.21 16 16 O -0.53 -11.90 15.65 5.56 0.09 -11.81 16 17 C -0.13 -2.52 5.64 -27.88 -0.16 -2.68 16 18 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 19 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 20 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 23 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C -0.01 -0.11 9.15 -39.58 -0.36 -0.47 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 31 H 0.42 1.53 8.96 -34.47 -0.31 1.22 16 32 H 0.14 0.86 7.62 -52.48 -0.40 0.46 16 33 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 34 H 0.13 0.84 6.92 -52.49 -0.36 0.47 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.39 3.94 6.87 -40.82 -0.28 3.66 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.14 1.28 7.60 -52.48 -0.40 0.88 16 LS Contribution 386.15 15.07 5.82 5.82 Total: -1.00 -38.09 386.15 -9.85 -47.94 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.32 Total: 0.63 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -2.20 Total: -15.43 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.36 Total: -42.87 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -1.87 Total: -35.55 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 23.69 SS G_CDS: -0.62 Total: 23.08 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.09 -9.85 -47.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291626075.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.871 kcal (2) G-P(sol) polarization free energy of solvation -38.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds