Wall clock time and date at job start Sat Apr 11 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 S 1.65600 * 120.00199 * 2 1 4 4 O 1.42094 * 106.39947 * 311.45777 * 3 2 1 5 5 O 1.42095 * 106.39887 * 178.53990 * 3 2 1 6 6 C 1.76194 * 107.21818 * 65.00245 * 3 2 1 7 7 C 1.38253 * 120.00567 * 89.99991 * 6 3 2 8 8 C 1.38215 * 120.00819 * 180.02562 * 7 6 3 9 9 C 1.38260 * 119.99584 * 0.02562 * 8 7 6 10 10 C 1.38216 * 119.99776 * 359.97438 * 9 8 7 11 11 C 1.50698 * 119.99615 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.46867 * 199.99852 * 11 10 9 13 13 C 1.53000 * 109.47254 * 80.00296 * 11 10 9 14 14 N 1.46496 * 109.47526 * 319.99959 * 11 10 9 15 15 C 1.34777 * 120.00258 * 205.00423 * 14 11 10 16 16 O 1.21279 * 120.00166 * 359.97438 * 15 14 11 17 17 C 1.50706 * 119.99762 * 179.97438 * 15 14 11 18 18 C 1.53002 * 109.46925 * 179.97438 * 17 15 14 19 19 C 1.50696 * 109.47300 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99822 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00339 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99769 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00300 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47086 * 59.99960 * 23 21 19 25 25 H 1.48503 * 109.47151 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46879 * 299.99904 * 23 21 19 27 27 C 1.38215 * 119.99921 * 270.27624 * 6 3 2 28 28 H 1.08994 * 109.47119 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46525 * 299.99840 * 1 2 3 30 30 H 1.09002 * 109.46998 * 59.99651 * 1 2 3 31 31 H 0.96999 * 119.99636 * 179.97438 * 2 1 3 32 32 H 1.08005 * 119.99597 * 359.97438 * 7 6 3 33 33 H 1.07995 * 120.00093 * 179.97438 * 8 7 6 34 34 H 1.07992 * 120.00087 * 179.97438 * 9 8 7 35 35 H 1.09002 * 109.46821 * 299.99584 * 13 11 10 36 36 H 1.08992 * 109.47302 * 59.99789 * 13 11 10 37 37 H 1.09006 * 109.47229 * 180.02562 * 13 11 10 38 38 H 0.96999 * 119.99694 * 24.99813 * 14 11 10 39 39 H 1.09000 * 109.47318 * 299.99141 * 17 15 14 40 40 H 1.09000 * 109.47161 * 59.99772 * 17 15 14 41 41 H 1.09004 * 109.46930 * 299.99901 * 18 17 15 42 42 H 1.09004 * 109.47059 * 59.99503 * 18 17 15 43 43 H 0.97000 * 120.00540 * 179.97438 * 22 21 19 44 44 H 1.08003 * 120.00124 * 359.97438 * 27 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4341 0.0000 4 8 1.7121 2.2328 -1.0216 5 8 3.6738 1.1001 0.0347 6 6 1.9380 2.2414 1.5253 7 6 2.7383 2.0156 2.6298 8 6 2.4595 2.6484 3.8265 9 6 1.3797 3.5070 3.9192 10 6 0.5796 3.7327 2.8151 11 6 -0.5976 4.6681 2.9164 12 1 -1.2972 4.4607 2.1066 13 6 -0.1103 6.1146 2.8112 14 7 -1.2686 4.4712 4.2037 15 6 -2.5725 4.7842 4.3389 16 8 -3.1904 5.2293 3.3949 17 6 -3.2628 4.5810 5.6631 18 6 -4.7262 5.0119 5.5467 19 6 -5.4164 4.8094 6.8710 20 1 -4.8661 4.4134 7.7116 21 6 -6.7500 5.1306 7.0096 22 7 -7.4199 5.6134 5.9860 23 14 -7.6053 4.8803 8.6514 24 1 -6.9295 5.6971 9.6912 25 1 -9.0257 5.2984 8.5383 26 1 -7.5407 3.4456 9.0294 27 6 0.8558 3.0961 1.6193 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.9500 -0.8401 0.0004 32 1 3.5811 1.3440 2.5577 33 1 3.0845 2.4716 4.6893 34 1 1.1616 4.0012 4.8543 35 1 0.5892 6.3220 3.6210 36 1 0.3888 6.2611 1.8535 37 1 -0.9618 6.7912 2.8849 38 1 -0.7744 4.1155 4.9587 39 1 -3.2148 3.5279 5.9401 40 1 -2.7674 5.1806 6.4268 41 1 -4.7740 6.0651 5.2699 42 1 -5.2218 4.4127 4.7828 43 1 -8.3583 5.8391 6.0834 44 1 0.2281 3.2694 0.7577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291626075.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:39 Heat of formation + Delta-G solvation = -126.406440 kcal Electronic energy + Delta-G solvation = -26771.550569 eV Core-core repulsion = 22814.193598 eV Total energy + Delta-G solvation = -3957.356971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.26284 -40.10887 -38.41498 -37.04035 -36.72528 -35.92990 -35.52907 -33.39952 -32.45104 -32.28161 -30.32063 -27.71760 -26.89157 -25.24765 -24.55086 -23.56096 -22.19897 -21.17738 -20.43523 -19.13041 -18.81255 -18.57722 -17.60022 -17.39694 -17.05337 -16.95643 -16.51251 -16.41881 -16.13911 -15.51750 -15.35571 -14.90668 -14.83566 -14.66855 -14.46104 -14.23157 -14.07069 -13.84231 -13.51685 -13.42655 -13.32447 -13.26394 -13.21553 -13.13431 -12.78621 -12.70353 -12.58317 -12.50546 -11.99116 -11.88853 -11.88713 -11.62463 -11.31054 -10.77263 -10.61115 -10.55248 -10.42372 -10.21590 -9.92382 -8.16942 -6.30955 -0.70223 -0.26541 0.16169 1.42834 1.47035 1.54772 1.71838 1.95885 2.16219 2.42043 2.47330 2.72472 3.16101 3.18962 3.48037 3.76847 3.96105 4.01520 4.09272 4.16518 4.18833 4.26142 4.37458 4.51321 4.56987 4.58430 4.60605 4.69252 4.82039 4.84067 4.87591 4.96728 4.98129 5.09088 5.16363 5.21909 5.25942 5.48672 5.54593 5.65100 5.75504 5.86918 6.07161 6.18702 6.58097 6.87766 7.34000 7.39488 8.95437 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.002127 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.483195 B =13159.234543 C =13466.798505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -1.109 6.109 3 S 2.715 3.285 4 O -0.989 6.989 5 O -0.982 6.982 6 C -0.677 4.677 7 C -0.025 4.025 8 C -0.129 4.129 9 C -0.056 4.056 10 C -0.113 4.113 11 C 0.180 3.820 12 H 0.075 0.925 13 C -0.156 4.156 14 N -0.714 5.714 15 C 0.514 3.486 16 O -0.584 6.584 17 C -0.119 4.119 18 C 0.042 3.958 19 C -0.543 4.543 20 H 0.077 0.923 21 C -0.007 4.007 22 N -0.938 5.938 23 Si 0.973 3.027 24 H -0.262 1.262 25 H -0.289 1.289 26 H -0.262 1.262 27 C -0.025 4.025 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.430 0.570 32 H 0.158 0.842 33 H 0.168 0.832 34 H 0.154 0.846 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.414 0.586 39 H 0.105 0.895 40 H 0.106 0.894 41 H -0.018 1.018 42 H -0.018 1.018 43 H 0.262 0.738 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.783 -12.968 -5.813 29.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.872 5.872 3 S 2.804 3.196 4 O -0.979 6.979 5 O -0.972 6.972 6 C -0.765 4.765 7 C -0.045 4.045 8 C -0.147 4.147 9 C -0.074 4.074 10 C -0.115 4.115 11 C 0.075 3.925 12 H 0.093 0.907 13 C -0.214 4.214 14 N -0.368 5.368 15 C 0.303 3.697 16 O -0.463 6.463 17 C -0.159 4.159 18 C 0.004 3.996 19 C -0.581 4.581 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.578 5.578 23 Si 0.797 3.203 24 H -0.187 1.187 25 H -0.215 1.215 26 H -0.187 1.187 27 C -0.045 4.045 28 H 0.128 0.872 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.267 0.733 32 H 0.176 0.824 33 H 0.185 0.815 34 H 0.172 0.828 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.253 0.747 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.000 1.000 42 H 0.000 1.000 43 H 0.071 0.929 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 25.591 -12.130 -7.219 29.226 hybrid contribution -0.980 -0.071 1.194 1.546 sum 24.611 -12.200 -6.026 28.122 Atomic orbital electron populations 1.21729 0.77413 1.06143 1.02155 1.54995 1.16671 1.23776 1.91716 1.01067 0.72150 0.72809 0.73549 1.93562 1.79111 1.69746 1.55515 1.93556 1.32275 1.83861 1.87540 1.30757 1.07409 1.16316 1.22022 1.21279 0.96202 0.95821 0.91157 1.21659 0.97721 0.96522 0.98803 1.21606 0.92637 0.94854 0.98284 1.19949 0.97470 0.98959 0.95083 1.19714 0.91204 0.94429 0.87109 0.90664 1.22145 1.01327 0.94332 1.03577 1.46036 1.09942 1.66927 1.13920 1.21330 0.81845 0.75654 0.90862 1.90668 1.66434 1.46185 1.43035 1.21643 0.96617 1.04264 0.93336 1.18684 0.90954 0.94458 0.95468 1.21692 0.95827 1.42921 0.97635 0.90538 1.26134 0.98722 0.94741 1.00880 1.70170 1.09742 1.44857 1.33029 0.85391 0.76884 0.79248 0.78822 1.18688 1.21502 1.18654 1.20847 0.94090 0.91744 0.97841 0.87178 0.91894 0.91768 0.73274 0.82445 0.81486 0.82797 0.90378 0.90486 0.93801 0.74729 0.87695 0.87605 0.99984 0.99950 0.92895 0.84429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 11.14 127.77 1.42 2.12 16 2 N -1.11 -11.74 6.19 -206.53 -1.28 -13.02 16 3 S 2.71 46.48 5.74 -56.49 -0.32 46.16 16 4 O -0.99 -24.05 17.01 -128.00 -2.18 -26.23 16 5 O -0.98 -20.63 17.28 -128.00 -2.21 -22.85 16 6 C -0.68 -11.06 5.95 22.27 0.13 -10.92 16 7 C -0.03 -0.33 9.52 22.27 0.21 -0.11 16 8 C -0.13 -1.35 10.05 22.27 0.22 -1.12 16 9 C -0.06 -0.71 9.06 22.27 0.20 -0.51 16 10 C -0.11 -2.04 4.95 -19.87 -0.10 -2.14 16 11 C 0.18 4.20 2.78 44.25 0.12 4.32 16 12 H 0.08 2.13 7.44 -2.39 -0.02 2.12 16 13 C -0.16 -3.44 9.46 71.98 0.68 -2.76 16 14 N -0.71 -17.52 5.03 -446.10 -2.24 -19.76 16 15 C 0.51 18.80 7.79 87.66 0.68 19.48 16 16 O -0.58 -27.63 15.65 -3.03 -0.05 -27.68 16 17 C -0.12 -4.53 5.64 29.85 0.17 -4.36 16 18 C 0.04 2.29 4.26 29.85 0.13 2.42 16 19 C -0.54 -30.31 9.11 25.60 0.23 -30.07 16 20 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 21 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 22 N -0.94 -59.11 13.29 21.45 0.28 -58.82 16 23 Si 0.97 43.62 29.54 68.60 2.03 45.64 16 24 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 25 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 26 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 27 C -0.03 -0.48 9.15 22.27 0.20 -0.27 16 28 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.06 0.73 8.10 -2.39 -0.02 0.71 16 31 H 0.43 2.49 8.96 -96.75 -0.87 1.63 16 32 H 0.16 1.44 7.62 -2.91 -0.02 1.42 16 33 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 34 H 0.15 1.24 6.92 -2.91 -0.02 1.22 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.41 6.95 6.87 -92.71 -0.64 6.31 16 39 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 40 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 41 H -0.02 -1.13 8.10 -2.38 -0.02 -1.15 16 42 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 43 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 44 H 0.14 2.60 7.60 -2.91 -0.02 2.58 16 Total: -1.00 -86.69 386.15 -1.67 -88.36 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -0.48 Total: 12.09 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: 4.78 Total: -23.90 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -3.23 Total: -91.60 kcal Atomic # 8 Polarization: -72.32 SS G_CDS: -4.44 Total: -76.75 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 46.48 SS G_CDS: -0.32 Total: 46.16 kcal Total: -86.69 -1.67 -88.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291626075.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.044 kcal (2) G-P(sol) polarization free energy of solvation -86.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds